Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007409

Physical Location & Seq

Genomic Coordinates Forward (+)

3086680 .. 3087816

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAAAACTCTTTTGCGGGACTCCAGGAAAGGCTGGTCCGCTCTTTGTCAGATTCAGATTATGAAGTTCGACTTGCAACATTGAAGTGGCTGCTGAAATTCATAACATCAACAGAATCTGGTAACGAGTCCCATGACATCAGCAGTGAGATTAGGGTTATTCAGCACTGGGTCAGAACTAACCTCCAAACGACATTGGTTAATATATTGGATGTGGAGAAGTACCACAGATGCTCATATTACATTCTGAGGATTCTATTCACTTGGAACACGCTGCAGTTCCAGAAACTTGGGGATGCAAAATGCACGGAAACAATTTACGTTGGCAGTATGGAATGTGATACTGTGTTTCTGCTTTGGGATAAGTTGATTTCCTTGTACAAGGTCACAAGACATGCAAAAGCTCAACAAACACTCATCTGCTGCTTCGGAATCTGCGTAAAGCGGTTTGCAGGTTTATTTACAACTTCTATTCTTATTGACAACAGTGACTCTGATTGGTTAGAACAGTTGACCCGACTTTATAGCATAATTTCCTTTTTCACCAACGTAATTATGAAACATAGTGCTTCGTCTGAGCCAATAAACATGCGCATGGCAGCGGCAGAGTCTATCATATCATCTGGTTTGCTAGAGCAAGCTGCGCTTATCGGTTCCACTGTATTCAATAGCCGAATCCCTTCTGAAAATTCATGCTCAACTTTTGAACCAAAAGAAGCGTTTAATTTCTACGGGCATCAAATACTAGATATATGGTTCACATGTATCCAGCTGCTGGAGGATGAAGATGATGAGATTAGAGAAAGGCTTGCCATTGGTATTCAGGGGAGTTTTACGAGCAAAAGATCTGGAAGCTCTCGTAGTGGAGTTGTTCCCACTCAAGTGGAGAAAGTGATCGGGTCTTGTTTTGAGCATCTATCTTCCATCTTTGGTCACTGGATTGGGTATTTCGATTATCTTTTACGCTGGGTGCTGAATGCATCAAATCGTGAGGTGCTGAAAGGAGATCTTGTGAGACAGGTATTTGATAAGGATCGATCGATAATCATCATGAGGAAAAGCTGTTCGTCTGTCAACTATGCTGTTCGCAACTGGAGAACCTTCCGATTTCAAAATCTTGGGCAGCTGACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2428

Protein Analysis

379

Amino Acids

43.47

Weight (kDa)

6.72

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55160 AT3G55160 AT3G55160
fragaria_vesca	FvH4_6g48870
malus_domestica	MD09G1049900.v1.1 MD17G1050300.v1.1
prunus_persica	Prupe.3G268800_v2.0.a1 Prupe.3G268800_v2.0.a1
pyrus_communis	pycom111g04090 pycom111g04100 pycom111g04110 pycom111g04120 pycom17g04520 pycom17g04530
rosa_chinensis	RchiOBHm_Chr2g0168711
rosa_laevigata	RLG00000021803
rosa_multiflora	Rmu_sc0002611.1_g000006
rosa_roxburghii	Rroxscaffold_2G00082750
rosa_rugosa	Rorug02G0534800 Rorug02G0534900
rosa_samantha	Rh2AG605600 Rh2BG618600 Rh2CG586700 Rh2DG629100
rosa_wichuraiana	Rw2G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	593
Acc36I	ACCTGC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccBSI	CCGCTC	1 cut(s)	42
AciI	CCGC	4 cut(s)	17, 40, 445, 602
AclWI	GGATC	1 cut(s)	1041
AcsI	RAATTY	2 cut(s)	98, 688
AfaI	GTAC	2 cut(s)	224, 380
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	85, 667, 707, 1112
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	881
AloI	GAACNNNNNNTCC	2 cut(s)	1048, 1080
AluBI	AGCT	6 cut(s)	404, 641, 772, 855, 1062, 1126
AluI	AGCT	6 cut(s)	404, 641, 772, 855, 1062, 1126
Alw26I	GTCTC	1 cut(s)	1009
AlwI	GGATC	1 cut(s)	1041
AlwNI	CAGNNNCTG	2 cut(s)	119, 775
ApeKI	GCWGC	7 cut(s)	91, 274, 423, 599, 641, 772, 1123
ApoI	RAATTY	2 cut(s)	98, 688
Asp700I	GAANNNNTTC	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	594, 646
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	37
BbvI	GCAGC	6 cut(s)	78, 261, 410, 611, 628, 759
BccI	CCATC	1 cut(s)	932
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	776
BcoDI	GTCTC	1 cut(s)	1009
BfaI	CTAG	2 cut(s)	632, 746
BfmI	CTRYAG	1 cut(s)	275
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	776
BglII	AGATCT	2 cut(s)	845, 1006
BisI	GCNGC	8 cut(s)	92, 275, 424, 600, 603, 642, 773, 1124
BlsI	GCNGC	8 cut(s)	93, 276, 425, 601, 604, 643, 774, 1125
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	221, 286, 745, 922, 989
BmuI	ACTGGG	1 cut(s)	178
BpmI	CTGGAG	3 cut(s)	8, 797, 1114
BpuEI	CTTGAG	1 cut(s)	864
Bsa29I	ATCGAT	2 cut(s)	1036, 1040
BsaBI	GATNNNNATC	2 cut(s)	1032, 1046
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	3 cut(s)	173, 941, 1097
Bse8I	GATNNNNATC	2 cut(s)	1032, 1046
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	2 cut(s)	1036, 1040
BseGI	GGATG	3 cut(s)	217, 301, 787
BseJI	GATNNNNATC	2 cut(s)	1032, 1046
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	2 cut(s)	239, 567
BseNI	ACTGG	3 cut(s)	173, 941, 1097
BseXI	GCAGC	6 cut(s)	78, 261, 410, 611, 628, 759
BseYI	CCCAGC	1 cut(s)	966
Bsh1285I	CGRYCG	1 cut(s)	1040
BshVI	ATCGAT	2 cut(s)	1036, 1040
BsiEI	CGRYCG	1 cut(s)	1040
BslFI	GGGAC	2 cut(s)	33, 115
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	1009
BsmFI	GGGAC	2 cut(s)	33, 115
BsmI	GAATGC	1 cut(s)	982
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
BspACI	CCGC	4 cut(s)	17, 40, 445, 602
BspCNI	CTCAG	2 cut(s)	240, 568
BspDI	ATCGAT	2 cut(s)	1036, 1040
BspHI	TCATGA	1 cut(s)	1050
BspLI	GGNNCC	1 cut(s)	655
BspMAI	CTGCAG	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	1 cut(s)	1041
BsrBI	CCGCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	173, 941, 1097
BssMI	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	4 cut(s)	346, 488, 510, 661
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	639, 810
BstDEI	CTNAG	2 cut(s)	248, 576
BstF5I	GGATG	3 cut(s)	217, 301, 787
BstHHI	GCGC	2 cut(s)	594, 646
BstKTI	GATC	5 cut(s)	848, 897, 1009, 1036, 1040
BstMAI	GTCTC	1 cut(s)	1009
BstMBI	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
BstMCI	CGRYCG	1 cut(s)	1040
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	3 cut(s)	398, 592, 765
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	6 cut(s)	78, 261, 410, 611, 628, 759
BstX2I	RGATCY	2 cut(s)	845, 1006
BstXI	CCANNNNNNTGG	2 cut(s)	290, 883
BstYI	RGATCY	2 cut(s)	845, 1006
Bsu15I	ATCGAT	2 cut(s)	1036, 1040
BsuI	GTATCC	1 cut(s)	776
BsuTUI	ATCGAT	2 cut(s)	1036, 1040
BtsCI	GGATG	3 cut(s)	217, 301, 787
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	5 cut(s)	151, 166, 493, 657, 934
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	639, 810
CaiI	CAGNNNCTG	2 cut(s)	119, 775
CciI	TCATGA	1 cut(s)	1050
CfoI	GCGC	2 cut(s)	594, 646
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	2 cut(s)	1036, 1040
Csp6I	GTAC	2 cut(s)	223, 379
CviAII	CATG	7 cut(s)	134, 395, 589, 595, 693, 762, 1051
CviQI	GTAC	2 cut(s)	223, 379
DdeI	CTNAG	2 cut(s)	248, 576
DpnI	GATC	5 cut(s)	847, 896, 1008, 1035, 1039
DpnII	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	982
FaeI	CATG	7 cut(s)	137, 398, 592, 598, 696, 765, 1054
FalI	AAGNNNNNCTT	6 cut(s)	57, 89, 630, 662, 993, 1025
FaqI	GGGAC	2 cut(s)	33, 115
FatI	CATG	7 cut(s)	133, 394, 588, 594, 692, 761, 1050
FauI	CCCGC	1 cut(s)	10
Fnu4HI	GCNGC	8 cut(s)	92, 275, 424, 600, 603, 642, 773, 1124
FokI	GGATG	3 cut(s)	224, 308, 794
Fsp4HI	GCNGC	8 cut(s)	92, 275, 424, 600, 603, 642, 773, 1124
FspAI	RTGCGCAY	1 cut(s)	593
FspBI	CTAG	2 cut(s)	632, 746
FspI	TGCGCA	1 cut(s)	593
GlaI	GCGC	2 cut(s)	593, 645
GluI	GCNGC	8 cut(s)	92, 275, 424, 600, 603, 642, 773, 1124
GsaI	CCCAGC	1 cut(s)	970
GsuI	CTGGAG	3 cut(s)	8, 797, 1114
HhaI	GCGC	2 cut(s)	594, 646
Hin1II	CATG	7 cut(s)	137, 398, 592, 598, 696, 765, 1054
Hin6I	GCGC	2 cut(s)	592, 644
HinP1I	GCGC	2 cut(s)	592, 644
HincII	GTYRAC	2 cut(s)	513, 1075
HindII	GTYRAC	2 cut(s)	513, 1075
HinfI	GANTC	9 cut(s)	21, 53, 116, 128, 253, 432, 491, 608, 675
HphI	GGTGA	1 cut(s)	535
Hpy166II	GTNNAC	3 cut(s)	513, 759, 1075
Hpy188III	TCNNGA	4 cut(s)	283, 849, 989, 1051
Hpy8I	GTNNAC	3 cut(s)	513, 759, 1075
HpyAV	CCTTC	2 cut(s)	690, 1111
HpyCH4III	ACNGT	4 cut(s)	346, 488, 510, 661
HpyCH4IV	ACGT	2 cut(s)	321, 549
HpyCH4V	TGCA	7 cut(s)	77, 277, 299, 306, 398, 452, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	2 cut(s)	248, 576
HpySE526I	ACGT	2 cut(s)	321, 549
Hsp92II	CATG	7 cut(s)	137, 398, 592, 598, 696, 765, 1054
HspAI	GCGC	2 cut(s)	592, 644
Kzo9I	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
Lsp1109I	GCAGC	6 cut(s)	78, 261, 410, 611, 628, 759
LweI	GCATC	5 cut(s)	221, 286, 745, 922, 989
MaeI	CTAG	2 cut(s)	632, 746
MaeII	ACGT	2 cut(s)	321, 549
MaeIII	GTNAC	4 cut(s)	122, 385, 488, 932
MalI	GATC	5 cut(s)	847, 896, 1008, 1035, 1039
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
MboII	GAAGA	2 cut(s)	797, 912
MflI	RGATCY	2 cut(s)	845, 1006
MluCI	AATT	6 cut(s)	98, 315, 531, 552, 688, 724
MlyI	GAGTC	4 cut(s)	15, 137, 485, 617
MnlI	CCTC	5 cut(s)	194, 243, 772, 985, 1047
Mph1103I	ATGCAT	1 cut(s)	982
MroXI	GAANNNNTTC	1 cut(s)	679
MseI	TTAA	2 cut(s)	201, 723
MslI	CAYNNNNRTG	3 cut(s)	85, 593, 881
MspA1I	CMGCKG	3 cut(s)	602, 772, 1126
MspR9I	CCNGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	643
NdeII	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
NlaIII	CATG	7 cut(s)	137, 398, 592, 598, 696, 765, 1054
NlaIV	GGNNCC	1 cut(s)	655
NmuCI	GTSAC	3 cut(s)	385, 488, 932
NsbI	TGCGCA	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	3 cut(s)	398, 592, 765
OliI	CACNNNNGTG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	1050
PciI	ACATGT	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	1 cut(s)	679
PfeI	GAWTC	5 cut(s)	53, 116, 253, 432, 675
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	8 cut(s)	93, 276, 425, 601, 604, 643, 774, 1125
Ple19I	CGATCG	1 cut(s)	1040
PleI	GAGTC	4 cut(s)	15, 136, 485, 616
PpsI	GAGTC	4 cut(s)	15, 136, 485, 616
PscI	ACATGT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	966
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	279
PstNI	CAGNNNCTG	2 cut(s)	119, 775
PsuI	RGATCY	2 cut(s)	845, 1006
PvuI	CGATCG	1 cut(s)	1040
PvuII	CAGCTG	2 cut(s)	772, 1126
RsaI	GTAC	2 cut(s)	224, 380
RsaNI	GTAC	2 cut(s)	223, 379
RseI	CAYNNNNRTG	3 cut(s)	85, 593, 881
SaqAI	TTAA	2 cut(s)	201, 723
SatI	GCNGC	8 cut(s)	92, 275, 424, 600, 603, 642, 773, 1124
Sau3AI	GATC	5 cut(s)	845, 894, 1006, 1033, 1037
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	4 cut(s)	15, 137, 485, 617
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	5 cut(s)	221, 286, 745, 922, 989
SfcI	CTRYAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	3 cut(s)	85, 593, 881
SmlI	CTYRAG	1 cut(s)	879
SmoI	CTYRAG	1 cut(s)	879
Sse9I	AATT	6 cut(s)	98, 315, 531, 552, 688, 724
SsiI	CCGC	4 cut(s)	17, 40, 445, 602
SspMI	CTAG	2 cut(s)	632, 746
StyD4I	CCNGG	1 cut(s)	24
TaaI	ACNGT	4 cut(s)	346, 488, 510, 661
TaiI	ACGT	2 cut(s)	324, 552
TaqI	TCGA	4 cut(s)	70, 951, 1036, 1040
TasI	AATT	6 cut(s)	98, 315, 531, 552, 688, 724
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	5 cut(s)	53, 116, 253, 432, 675
Tru1I	TTAA	2 cut(s)	201, 723
Tru9I	TTAA	2 cut(s)	201, 723
TscAI	CASTG	5 cut(s)	151, 173, 493, 664, 941
TseFI	GTSAC	3 cut(s)	385, 488, 932
TseI	GCWGC	7 cut(s)	91, 274, 423, 599, 641, 772, 1123
Tsp45I	GTSAC	3 cut(s)	385, 488, 932
TspDTI	ATGAA	5 cut(s)	78, 91, 572, 681, 798
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	5 cut(s)	151, 173, 493, 664, 941
Van91I	CCANNNNNTGG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	2 cut(s)	98, 688
XceI	RCATGY	3 cut(s)	398, 592, 765
XmnI	GAANNNNTTC	1 cut(s)	679
XspI	CTAG	2 cut(s)	632, 746
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.