Rw2G050200

Putative death-receptor fusion protein (DUF2428)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
77837624 .. 77845640
8017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050200.1

Sequence Viewer

Length: 6417 bp
ATGTCCTCCAAATGGCGCGCGATTCAGCACCGCCACAAGTACACCTACAACACCGTCGTCTTTCCCGCCTCCTACACCGCCTCGCTGACGTCACTCCCGCCCCAAATCTCCAACTCAAAATTCTTCTCCCAATTGAGCGACCTGGTCTCCCTTAATTCCACATACGCCCAACTCAACCACACCAAGGCCCTCTCTTCCTCCTTCGTCGCCGAAGCGGCGCCGTTTTACTTGGAGCTTCTGTTTCTGGAAAATTCTCTGCCTTTGCATAAAACCCTAGTCTCTGCTCTGGCAAAGGCCCGAACTTTCCAGGCTCTGATCGGAAAATGGTTCCGGAAACTTTGCGAGGAGTATGGTGGCGGTAAAGGGAAGCGGTTCTGCGTCTCGAGGGCGGCGCTGTCGGTGATGGGTATGCCCAAGTTGGGGTTTTTGGTTGAGGTTGTGGAGGAATGTGCGGTTTTGATCGCTTTGGATGCGGTTTCGAGCTTGAATGCTTTGGTTTCGGAGACGAAAGCCGCGGCTAGGCCTTCGCCGATTGTAATGGAGCAATGCCAGGAGGCTCTGTCTTGTTTGTATTACTTGCTTCAACGGTTTCCGGCTAAATTTGGTGTTGAGGTTGGGGATTCGGGTGTTTTGGAGATGAGTATGGCTGTCATTTTGAGCATTTTGAAGTCGGTGGCGTTTTCGAGGGACTGTTATGTGGCTGCTGGTGTGAGCTTCTGTGCAGCTCTGCAAGTGTGTCTTGGTCCTGAAGAGCTTGGCTGGTTTATAATTGAAGGTATATTTCGTCGAACTCACTCTAATTGTGAGAGTGAATTAAAGAATGCTATTGCTAAAGTTCCATATAAAGGGGATGTGTACTCTGAAATAGGATGTTTATGTGATATGAGTAGACTTTGTTTGATAAGAGGGATTCTTACTGCGGTTTCAAGAACAGTGCTTAATACCCGGTTTGATATGTCTGGGGGTAATTCGAATGGCTATCTGGGACATGTAAATGAGGATGATCATGTTAAGTCTATACTGTATGATGGAATTTTGCCTGAACTGTGTAACTACTGCGAGAACCCTACAGATAGCCATTTTAACTTTCATGCGTTAACTGTATTGCAGATTTGCTTGCAACAAATAAAATCCTCAATGTTAGCTAATCTTACAATACCCTCGACCCGAATATTGAGAATTGCATGGAATAATCTGGAAGATCCTTTAAGTCAAACAGTTAAACAAGCTCATCTTATTTTTGATCTCTTCCTAGACATCCGTTCCACCCTTTGTTGGTCAGAAGGTAGTGAGAGAATAAGGTCATTCTTGCAAAATATTGCTTCTGATCTTCTTCGTTTGGGTCCTCGCTGCAAGGGGAGGTATGTTCCTTTAGCTTCACTGACCAAGCGATTGGGCGCAAAAACTATGTTAAATATGAGTCCTAACCTGATGTATGAGATTGTACATGCCTATGTTGATGATGATGTCTGCTGTGCTGTCACATCATTTTTGAAGTGTTTTCTTGAGCACTTGCGTGACGAGTGTTGGAGCAGCGATGGTATTGAAGGTGGTTATGCACTTTACAGAGGGCATTGTTTGCCTCCATTGTTGTATGGACTTTCTTCTGGGGTTTCAAAGCTCCGCTCTAATTTGAACACATATGCTCTTCCAATTTTACTTGAAGTGGATGAGGACAGCTTATTTTCCATGCTGGCATTTATTTCAGTTGGTCCGAGTAAGGGTGATGATCAACTGTTATTTCCTGAGCTCTTTGGTGATAACATAGTATTGAGGGTTGAACAAAAGGTGGCAATCTTAGTTTCATTGCTCAAGGTATCTCGTTTGCTTGCTTTGATTGAAGGGGACATTGATTGGTGCAAAGATTCTGATCAATATGCTCTAGTTTGTATCAAGGGAACAAAAGTTGAAGTTGTTGTCGAGTGGTTAGTGCTTGCGTTGACCCATGTTGATGAGTCATTACGTGTGGATGCTGCAGAGACTCTTTTCTTGAATCCCAAGACGGCTAGCTTGCCTTCCCATTTAGAACTCATGTTGTTCAGGGAAGCAGTCCCACTTAACATGAGATGTTGCTCTACAGGTTTTCAAATGAAGTGGAGTAGCTTGTTTAGAAAGTTTTTTTCTCGTGTGCGAACAGCCTTGGAAAGACAATTCAAGCAGGGAAGCTGGCAGCCGATTGAGGATAACAACCACAGTGGAAAACATCTTTCAAATGGTAGTGAGCACACTGAAGCTCACAGAGCAAGTGATCTTTTTCATTTCATGAGGTGGTTAAGTTCATTTCTATTTTTCTCATGCTATCCTTCTGCCCCTTATCAGAGAAAAATAATGGCCACACAGCTGATTCTGATCATGCTTAATGTTTGGTCCATTGTGCCTGCTACTGAAGAAAAATTTGGCTGTGTTTCTTTAGAAGGCTGTCTCTATCCTTATAATCAAGGAACGACTTCACCTGATTCAACTTTGTTGTTAGTTGGATCAATAATTGATAGTTGGGACAGGCTGAGAGAGAGTTTCTTTCGTATACTGTTACACTTTCCAAATCCACTTCCAGGAATTTCAGATGAACATATGGTCCAGAACGTGGTTTCATGGGCTAAGAAATTAGTTTGCAGTCCGCGTGTGAGAGAAAGTGATGCTGGAGCTCTGGCTTTAAGGCTAATTTTCAGGAAGTATGTCTTACAGCTAGGATGGACAGTTCAAGCTTCAGTTTGTGTAGCTTGCATTCAATCACAGTCTGGATTGGAAAACAGAGATTGTCAGACTTATAATTCTAGGCACCCTGTGATTGAATATGTTAGATCACTGATTGATTGGTTGGATGTTTCCATAGTGGAAGGGGAGAGGGATCTTTCGGAAGCCTGCAAAAGCAGCTTTGTCCATGGAGTATTACTTACACTACGATATACTTTTGAGGAACTAGACTTCAGCTCTGATGGAGTACTGTCTAGTATTTCAGAGATGAGACATCTATTAGAGAAGCTCTTGCAGCTTGTGATGCGAATAACTTCTTTGGCACTTTGGGTGGTTTCTGCAGATGCTTTGCAGCTTCCTGAGGACATGGATGATATGGTTGATGATGAAACTTTCTTATCCGAGGTTCCAGAAGAGGTGGAGGCAAAAACATCTCTTTTGGAGCATGGAGACAATAACTCCACACTTCTGCAGGATAATAGGCGATCGGAACAAACTGTAATGGTTGGTTGCTGGCTTGCGATGAAAGAGGTGAGTCTTCTTTTGGGAACTATTGTAAGAAAGGTTCCTTTACCAAGTAGCCCTTCCTCAGTATCATTACATGCAGAAGCCACCTCTTGTGCGTCTGGAGTTTCAGATATGATGGTTTCGGATGCAATGCTTGATTTGAAACAACTTGAAACAATTGGGAATCACTTCTTGGAAGTCCTTCTTAAAATGAAGCATAATGGTGCCATTGATAAAACAAGGGCTGGATTTACAGCTCTTTGCAACCGTTTACTTTGCTCAAATGATCCTAGGCTTTGTAAGTTAACAGAGTCCTGGATGGAGCAACTTATGGAAAGAACTGTGGCCAAGGGTCAAGTAGTGGATGACTTGCTAAGGAGAAGTGCAGGTATTCCCGCTGCATTTACAGCTCTATTTTTGTCAGAGCCTGAAGGCGCACCTAAGAAACTTCTCCCACGGGCCTTGCGGTGGCTGATAGATGTTGCTAAAGAGTCTTTTATGGATCAATTTGAAACCAGCAGCTCCAATGGTGACATGCGTAAATTTTGTTCGACAAAGTCGGACAATAGTTTTGATTCTGCACTGCCATCAGAGAGAAATATAGGTGTCGTTCCTACCGTACATGCATTCAATGTCCTTAGAGCTGCTTTCAATGACACCAACCTGGCTACTGATACATCAGGTGCTTGTCAGGCATACACTGCTTTAGTACGTCGCATGATTGGATTCCTTAATGTCCAGAAACGGGAGTCACAAAGGCGTGCACTAACTGGGGTTGAATTTTTTCATAGGTATCCCTCTTTGCATCCATTTTTATTCAAGGAACTGAAAGCTGCAACTGAGTTGCTTGGGGATGGGCCATCTGGACAGTCTGGGTGTAATCTGGAAGATGCTGTGCACCCAAGCTTGTGTCCTGTGTTGATTCTGTTATCCAGGCTTAAGCCCTCAACTATTGCAAGTGAGGCTGGAGATGACCTGGATCCTTCTTTGTTCATGCCGTTCATTAGGAGGTGCTCAACCCAAAGCAATCTCAGAGTCCGTGTTCTTGCATCTAGAGCTTTAACAGGCCTTGTATCTAATGAGAAATTGCCAACTGTTATTCTCAATATAGTATCAGAGTTGCCTAGCATAGACAACCAAGCTACAATGACTCCTGAGTCGTCCTTGCTACTTCACAAAACCAGAAGAAGTAATTGGATTCATGGAGTTCTGTTGCAGTTAAGTTCTCTGCTGGATACAAACTGTAGAAATCTGGCCGATGTCGTAAAGAAAGATCAGATTTTAGGTGACTTATTTGAAGCTCTTCTAAGTCATTCATGGATGGCAATGCCCAGATGTTGCCCTTGTCCCATCCTCAATGCCTCTTTCTTAAAGCTGCTGGACCACATGCTCAGTATTGCGAGGACAAGCCATACCAGCAGACATTTTTATGCCCTCCGCAACCTACTGTTACAGTTATCTACAGAATGCCTAGACGTAGAAGCTTCTCATGGGTTCTCTTATTATGATCCGACAATAGCTCAACTCCGCCAACAAGCAGCAGCATCCTATTTCAGTTGCGTCTTTCAAGCAACTGAGGAAATGGCCGCAGAGGCTTTTCAGATGCCTCAGAGGTACTCTCAGATTGATTCAACTAATCAGAAGATACCTGAAACAGAGAATGCTTTTATAGGACTCCAGGAAAGACTGGTCCGGTCTCTGTCAGATTCGGAATATGAAGTTCGACTTGCAACATTGAAGTGGCTACTGAAATTCCTAACATCAACAGAATCTGGTAGCGGGTCCCATAATTTTAGCAGTGAGGTTAGGATCATTCTCCACTGGATCAGAACTAAACTCCAGGCCTCATTGGTTGATCTCTTAGATGTGGAGAAGTATTACAGATGCTCGTATTACATTCTGAGAATTATATTCACTTGGAATGCGCAACAGTTCCAGAAGCCTAGGGATGAAAAATGCACTGAATCAGTTTATGTTGGTAGTATGGAATGTGATTCTGTGTTTCTGCTTTGGGATAAGTTGATTTCCTTGTACAATCTCACAAGACATGCAAAGACTCGAGAAACACTCATATGCTGCATTGGAATCTGCATAAAGAGGTTTGCAGGTTTATTTACAACTTCTGTTCTTTCTGATGCAACGGACAACAATGAGTCTGATCAGTTGGGAAAACTGGGCGCACTTCATAGTAGAATTTCCTTTTTCACTGAATTAATTAAGAAACATAGTGCTTCATCTCAGCCGGTAAACATGCGTAAGGCAGCAGCAGAGTCTATCATAGCATCTGGTTTGCTAGAGCAAGCTGAGTTGATTGGTTCTACTGTGTTCAATAGCCGAATCCCTTTGGAAAGGTCATCGTCTCATTTTGAAGGAAAAGAAGCGGTTAATATCTATGCTCATCAAATAGTAGATATATGGTTCACATGTATCAAGCTGCTGGAGGATGAAGATGACGAGATTAGGCAAAGGCTCGCCATGGGTATTCAAAGGTGTTTTTCTTGCCAAAGATCCGGAAGAAGCTCTCTTACTGGAGAAGTTCCAACTCAAGTGGAGAAAGTGATAGAGTCGAGTTTCGAGCATCTAACTTCCATCTTTGGTCACTGGATTGGGTATTTGGATTTTCTTTTACACAGTGTACTGAATGCAGCAAGCCATGAGGTGTCCAAAGGAGATCTTGTGAGACAGGTATTTGATAAGGAAATCGATAATCATCATGAGGAAAAACTTTTGATCTGCCAGCTTTGCTGTTCTCAATTAGAGAAGCTTCCGATTACAAAATCTTGTGCTGCCGACGTTTCGGACAAACAGCAGTTTAGGGATTATTTACATGATTGGAGACTCAGGTTTTCCCGCCAATTGATGTCGTTTGCCAAGGACTGCATGGCGAAACTAGGTGGAGCCGATTGGGTTGGTGGAGTAGGTAACCATAAGGATTCATTTCTCCCCCTGTATTCCAGTTTGCTTGCATTTCATGCCATCTCGAACTGCATGTTGAATGGGAATGCGGAAGATAGTACACATCTACTGTCTGATGTTGCTGAACTCGGGAGAACTATCAGTCCATTTCTGAAGAACCCTCTGATCTCTAACCTGTATTTTTCAGTACTTAAATCTCATGAAGATGCTCTTGGTCCGACCAATGATGACTTGATCTCCAAACTGAGAGGAGAGGATGCAATATGGAAGGGGTTCAATCCCCATTTTCTTCTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

2138

Amino Acids

239.47

Weight (kDa)

6.1

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_Trm732 PF25150 528 - 836 5.9e-17 Trm732, TPR repeats
DUF2428 PF10350 991 - 1297 9.9e-65 THADA/TRM732, DUF2428
TPR_Trm732_C PF25151 1296 - 1476 8.4e-30 Trm732, C-terminal TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 767, 2433, 2769
AasI GACNNNNNNGTC 1 cut(s) 4357
AatII GACGTC 1 cut(s) 92
Acc16I TGCGCA 1 cut(s) 5127
Acc36I ACCTGC 2 cut(s) 3578, 5297
AccB1I GGYRCC 3 cut(s) 217, 2778, 3425
AccB7I CCANNNNNTGG 1 cut(s) 2584
AccBSI CCGCTC 1 cut(s) 1626
AccI GTMKAC 2 cut(s) 889, 2524
AccII CGCG 4 cut(s) 18, 20, 515, 2620
AccIII TCCGGA 2 cut(s) 330, 5711
AcoI YGGCCR 4 cut(s) 2331, 3546, 4455, 4785
AcuI CTGAAG 7 cut(s) 768, 2250, 2406, 2691, 2911, 3651, 6290
AcyI GRCGYC 2 cut(s) 89, 218
AdeI CACNNNGTG 1 cut(s) 2785
AflII CTTAAG 1 cut(s) 4139
AflIII ACRYGT 3 cut(s) 988, 1963, 5624
AleI CACNNNNGTG 1 cut(s) 1515
AloI GAACNNNNNNTCC 6 cut(s) 2559, 2591, 2682, 2714, 6244, 6276
Alw21I GWGCWC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
Alw44I GTGCAC 2 cut(s) 3963, 4097
AlwNI CAGNNNCTG 3 cut(s) 313, 3629, 4973
Ama87I CYCGRG 3 cut(s) 382, 5259, 6245
Aor13HI TCCGGA 2 cut(s) 330, 5711
ApaLI GTGCAC 2 cut(s) 3963, 4097
ArsI GACNNNNNNTTYG 2 cut(s) 3755, 3787
AseI ATTAAT 1 cut(s) 5414
Asp700I GAANNNNTTC 8 cut(s) 371, 2446, 3007, 3389, 3402, 3984, 4503, 6389
AspA2I CCTAGG 2 cut(s) 3491, 5144
AspLEI GCGC 8 cut(s) 18, 20, 220, 394, 1400, 3638, 5128, 5381
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 7 cut(s) 412, 1736, 1769, 2442, 3238, 3743, 4499
AsuII TTCGAA 1 cut(s) 971
AsuNHI GCTAGC 1 cut(s) 2006
AvaI CYCGRG 3 cut(s) 382, 5259, 6245
AvaII GGWCC 9 cut(s) 743, 1343, 1712, 2367, 2575, 4582, 4891, 4983, 6332
AvrII CCTAGG 2 cut(s) 3491, 5144
AxyI CCTNAGG 1 cut(s) 3054
BaeGI GKGCMC 2 cut(s) 3967, 4101
BalI TGGCCA 2 cut(s) 2333, 3548
BamHI GGATCC 1 cut(s) 4180
BanI GGYRCC 3 cut(s) 217, 2778, 3425
BanII GRGCYC 2 cut(s) 1752, 2647
BarI GAAGNNNNNNTAC 2 cut(s) 5710, 5742
BauI CACGAG 1 cut(s) 2124
BbsI GAAGAC 1 cut(s) 3224
Bbv12I GWGCWC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
BceAI ACGGC 3 cut(s) 205, 2019, 4183
BciVI GTATCC 2 cut(s) 4005, 4429
BclI TGATCA 5 cut(s) 1003, 1729, 1870, 2349, 5359
BcnI CCSGG 1 cut(s) 946
BfmI CTRYAG 7 cut(s) 1068, 1974, 2076, 3033, 3164, 4444, 4662
BfoI RGCGCY 2 cut(s) 221, 395
BfrI CTTAAG 1 cut(s) 4139
BfuAI ACCTGC 2 cut(s) 3578, 5297
BfuI GTATCC 2 cut(s) 4005, 4429
BglI GCCNNNNNGGC 2 cut(s) 215, 4793
BglII AGATCT 1 cut(s) 5872
BlnI CCTAGG 2 cut(s) 3491, 5144
BmcAI AGTACT 2 cut(s) 2943, 6306
Bme18I GGWCC 9 cut(s) 743, 1343, 1712, 2367, 2575, 4582, 4891, 4983, 6332
BmeT110I CYCGRG 3 cut(s) 382, 5259, 6245
BmrI ACTGGG 2 cut(s) 3981, 5384
BmtI GCTAGC 1 cut(s) 2010
BmuI ACTGGG 2 cut(s) 3981, 5384
BpiI GAAGAC 1 cut(s) 3224
BplI GAGNNNNNCTC 4 cut(s) 4804, 4836, 5253, 5285
BpmI CTGGAG 7 cut(s) 2661, 3342, 4188, 4862, 5024, 5660, 5751
Bpu10I CCTNAGC 2 cut(s) 1746, 3575
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 3 cut(s) 1526, 1796, 5730
BpuMI CCSGG 1 cut(s) 946
Bsa29I ATCGAT 1 cut(s) 5904
BsaAI YACGTR 1 cut(s) 1964
BsaBI GATNNNNATC 3 cut(s) 1869, 2348, 5910
BsaHI GRCGYC 2 cut(s) 89, 218
BsaI GGTCTC 2 cut(s) 151, 4902
BsaWI WCCGGW 3 cut(s) 330, 4893, 5711
Bse118I RCCGGY 1 cut(s) 5443
Bse1I ACTGG 7 cut(s) 3976, 4893, 5027, 5379, 5734, 5807, 6156
Bse21I CCTNAGG 1 cut(s) 3054
Bse3DI GCAATG 4 cut(s) 551, 1805, 3357, 4533
Bse8I GATNNNNATC 3 cut(s) 1869, 2348, 5910
BseAI TCCGGA 2 cut(s) 330, 5711
BseCI ATCGAT 1 cut(s) 5904
BseJI GATNNNNATC 3 cut(s) 1869, 2348, 5910
BseMI GCAATG 4 cut(s) 551, 1805, 3357, 4533
BseNI ACTGG 7 cut(s) 3976, 4893, 5027, 5379, 5734, 5807, 6156
BsePI GCGCGC 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 359, 6381
BseSI GKGCMC 2 cut(s) 3967, 4101
BsgI GTGCAG 3 cut(s) 741, 3606, 3765
Bsh1236I CGCG 4 cut(s) 18, 20, 515, 2620
Bsh1285I CGRYCG 1 cut(s) 3182
BshNI GGYRCC 3 cut(s) 217, 2778, 3425
BshVI ATCGAT 1 cut(s) 5904
BsiEI CGRYCG 1 cut(s) 3182
BsiHKAI GWGCWC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
BsiHKCI CYCGRG 3 cut(s) 382, 5259, 6245
BsiSI CCGG 6 cut(s) 331, 593, 946, 4894, 5444, 5712
BslFI GGGAC 7 cut(s) 701, 999, 1859, 2036, 2510, 4533, 4969
BsmBI CGTCTC 3 cut(s) 385, 497, 5565
BsmFI GGGAC 7 cut(s) 701, 999, 1859, 2036, 2510, 4533, 4969
BsmI GAATGC 9 cut(s) 493, 826, 2724, 3827, 4673, 4867, 5128, 5848, 6208
Bso31I GGTCTC 2 cut(s) 151, 4902
BsoBI CYCGRG 3 cut(s) 382, 5259, 6245
Bsp119I TTCGAA 1 cut(s) 971
Bsp1286I GDGCHC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
Bsp13I TCCGGA 2 cut(s) 330, 5711
Bsp1407I TGTACA 2 cut(s) 1444, 5232
Bsp19I CCATGG 2 cut(s) 2881, 5676
BspDI ATCGAT 1 cut(s) 5904
BspEI TCCGGA 2 cut(s) 330, 5711
BspFNI CGCG 4 cut(s) 18, 20, 515, 2620
BspHI TCATGA 3 cut(s) 2262, 5914, 6316
BspMAI CTGCAG 3 cut(s) 1978, 3037, 3168
BspMI ACCTGC 2 cut(s) 3578, 5297
BspOI GCTAGC 1 cut(s) 2010
BspQI GCTCTTC 3 cut(s) 744, 1653, 4509
BspT104I TTCGAA 1 cut(s) 971
BspT107I GGYRCC 3 cut(s) 217, 2778, 3425
BspTI CTTAAG 1 cut(s) 4139
BspTNI GGTCTC 2 cut(s) 151, 4902
BsrBI CCGCTC 1 cut(s) 1626
BsrDI GCAATG 4 cut(s) 551, 1805, 3357, 4533
BsrFI RCCGGY 1 cut(s) 5443
BsrGI TGTACA 2 cut(s) 1444, 5232
BsrI ACTGG 7 cut(s) 3976, 4893, 5027, 5379, 5734, 5807, 6156
BssAI RCCGGY 1 cut(s) 5443
BssHII GCGCGC 1 cut(s) 16
BssNAI GTATAC 1 cut(s) 2525
BssNI GRCGYC 2 cut(s) 89, 218
BssSI CACGAG 1 cut(s) 2124
BssT1I CCWWGG 8 cut(s) 183, 2139, 2881, 3491, 3549, 5144, 5676, 6072
Bst1107I GTATAC 1 cut(s) 2525
Bst2BI CACGAG 1 cut(s) 2124
Bst6I CTCTTC 6 cut(s) 199, 744, 1253, 1653, 3102, 4509
BstACI GRCGYC 2 cut(s) 89, 218
BstAFI CTTAAG 1 cut(s) 4139
BstAPI GCANNNNNTGC 3 cut(s) 1579, 3902, 6173
BstAUI TGTACA 2 cut(s) 1444, 5232
BstBAI YACGTR 1 cut(s) 1964
BstBI TTCGAA 1 cut(s) 971
BstDSI CCRYGG 4 cut(s) 513, 2881, 3656, 5676
BstEII GGTNACC 1 cut(s) 6122
BstFNI CGCG 4 cut(s) 18, 20, 515, 2620
BstH2I RGCGCY 2 cut(s) 221, 395
BstHHI GCGC 8 cut(s) 18, 20, 220, 394, 1400, 3638, 5128, 5381
BstMCI CGRYCG 1 cut(s) 3182
BstPI GGTNACC 1 cut(s) 6122
BstSFI CTRYAG 7 cut(s) 1068, 1974, 2076, 3033, 3164, 4444, 4662
BstSLI GKGCMC 2 cut(s) 3967, 4101
BstUI CGCG 4 cut(s) 18, 20, 515, 2620
BstV2I GAAGAC 1 cut(s) 3224
BstX2I RGATCY 5 cut(s) 1201, 2848, 4180, 5708, 5872
BstXI CCANNNNNNTGG 1 cut(s) 1393
BstYI RGATCY 5 cut(s) 1201, 2848, 4180, 5708, 5872
BstZ17I GTATAC 1 cut(s) 2525
Bsu15I ATCGAT 1 cut(s) 5904
Bsu36I CCTNAGG 1 cut(s) 3054
BsuI GTATCC 2 cut(s) 4005, 4429
BsuTUI ATCGAT 1 cut(s) 5904
BtgI CCRYGG 4 cut(s) 513, 2881, 3656, 5676
BtgZI GCGATG 2 cut(s) 1551, 3230
BtsI GCAGTG 3 cut(s) 3782, 3900, 5005
BveI ACCTGC 2 cut(s) 3578, 5297
CaiI CAGNNNCTG 3 cut(s) 313, 3629, 4973
CciI TCATGA 3 cut(s) 2262, 5914, 6316
CfoI GCGC 8 cut(s) 18, 20, 220, 394, 1400, 3638, 5128, 5381
Cfr10I RCCGGY 1 cut(s) 5443
Cfr42I CCGCGG 1 cut(s) 516
ClaI ATCGAT 1 cut(s) 5904
CseI GACGC 3 cut(s) 367, 3306, 4750
CsiI ACCWGGT 1 cut(s) 141
CspCI CAANNNNNGTGG 8 cut(s) 2075, 2110, 2176, 2211, 3645, 3680, 5730, 5765
DinI GGCGCC 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 2785
DrdI GACNNNNNNGTC 1 cut(s) 4357
DseDI GACNNNNNNGTC 1 cut(s) 4357
EaeI YGGCCR 4 cut(s) 2331, 3546, 4455, 4785
Eam1104I CTCTTC 6 cut(s) 199, 744, 1253, 1653, 3102, 4509
EarI CTCTTC 6 cut(s) 199, 744, 1253, 1653, 3102, 4509
EciI GGCGGA 1 cut(s) 4718
Ecl136II GAGCTC 2 cut(s) 1750, 2645
Eco130I CCWWGG 8 cut(s) 183, 2139, 2881, 3491, 3549, 5144, 5676, 6072
Eco147I AGGCCT 3 cut(s) 523, 4269, 5045
Eco24I GRGCYC 2 cut(s) 1752, 2647
Eco31I GGTCTC 2 cut(s) 151, 4902
Eco47I GGWCC 9 cut(s) 743, 1343, 1712, 2367, 2575, 4582, 4891, 4983, 6332
Eco53kI GAGCTC 2 cut(s) 1750, 2645
Eco57I CTGAAG 7 cut(s) 768, 2250, 2406, 2691, 2911, 3651, 6290
Eco81I CCTNAGG 1 cut(s) 3054
Eco88I CYCGRG 3 cut(s) 382, 5259, 6245
Eco91I GGTNACC 1 cut(s) 6122
EcoICRI GAGCTC 2 cut(s) 1750, 2645
EcoO109I RGGNCCY 3 cut(s) 187, 1343, 4983
EcoO65I GGTNACC 1 cut(s) 6122
EcoT14I CCWWGG 8 cut(s) 183, 2139, 2881, 3491, 3549, 5144, 5676, 6072
EcoT22I ATGCAT 1 cut(s) 3829
EcoT38I GRGCYC 2 cut(s) 1752, 2647
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
ErhI CCWWGG 8 cut(s) 183, 2139, 2881, 3491, 3549, 5144, 5676, 6072
Esp3I CGTCTC 3 cut(s) 385, 497, 5565
FaqI GGGAC 7 cut(s) 701, 999, 1859, 2036, 2510, 4533, 4969
FauI CCCGC 5 cut(s) 73, 105, 3604, 4973, 6059
FauNDI CATATG 3 cut(s) 1642, 2571, 5273
FbaI TGATCA 5 cut(s) 1003, 1729, 1870, 2349, 5359
FblI GTMKAC 2 cut(s) 889, 2524
FriOI GRGCYC 2 cut(s) 1752, 2647
FspI TGCGCA 1 cut(s) 5127
GlaI GCGC 8 cut(s) 17, 19, 219, 393, 1399, 3637, 5127, 5380
GsuI CTGGAG 7 cut(s) 2661, 3342, 4188, 4862, 5024, 5660, 5751
HaeII RGCGCY 2 cut(s) 221, 395
HapII CCGG 6 cut(s) 331, 593, 946, 4894, 5444, 5712
HgaI GACGC 3 cut(s) 367, 3306, 4750
HhaI GCGC 8 cut(s) 18, 20, 220, 394, 1400, 3638, 5128, 5381
Hin1I GRCGYC 2 cut(s) 89, 218
Hin6I GCGC 8 cut(s) 16, 18, 218, 392, 1398, 3636, 5126, 5379
HinP1I GCGC 8 cut(s) 16, 18, 218, 392, 1398, 3636, 5126, 5379
HincII GTYRAC 3 cut(s) 1098, 1941, 3507
HindII GTYRAC 3 cut(s) 1098, 1941, 3507
HindIII AAGCTT 4 cut(s) 2703, 4105, 4683, 5963
HpaI GTTAAC 2 cut(s) 1098, 3507
HpaII CCGG 6 cut(s) 331, 593, 946, 4894, 5444, 5712
HphI GGTGA 7 cut(s) 412, 1736, 1769, 2442, 3238, 3743, 4499
Hpy99I CGWCG 5 cut(s) 59, 209, 789, 3918, 5996
HpyCH4IV ACGT 6 cut(s) 89, 1963, 2583, 3913, 4677, 5994
HpySE526I ACGT 6 cut(s) 89, 1963, 2583, 3913, 4677, 5994
Hsp92I GRCGYC 2 cut(s) 89, 218
HspAI GCGC 8 cut(s) 16, 18, 218, 392, 1398, 3636, 5126, 5379
KasI GGCGCC 1 cut(s) 217
KflI GGGWCCC 1 cut(s) 4983
Kpn2I TCCGGA 2 cut(s) 330, 5711
Ksp22I TGATCA 5 cut(s) 1003, 1729, 1870, 2349, 5359
KspAI GTTAAC 2 cut(s) 1098, 3507
KspI CCGCGG 1 cut(s) 516
LguI GCTCTTC 3 cut(s) 744, 1653, 4509
LmnI GCTCC 9 cut(s) 232, 541, 1530, 1626, 2642, 3136, 3523, 3728, 6098
MabI ACCWGGT 1 cut(s) 141
MaeII ACGT 6 cut(s) 89, 1963, 2583, 3913, 4677, 5994
MbiI CCGCTC 1 cut(s) 1626
MfeI CAATTG 3 cut(s) 131, 3378, 6056
MflI RGATCY 5 cut(s) 1201, 2848, 4180, 5708, 5872
MhlI GDGCHC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
MlsI TGGCCA 2 cut(s) 2333, 3548
MluNI TGGCCA 2 cut(s) 2333, 3548
Mly113I GGCGCC 1 cut(s) 218
MmeI TCCRAC 8 cut(s) 135, 1508, 2455, 2799, 3741, 4736, 5765, 6359
Mox20I TGGCCA 2 cut(s) 2333, 3548
Mph1103I ATGCAT 1 cut(s) 3829
MroI TCCGGA 2 cut(s) 330, 5711
MroXI GAANNNNTTC 8 cut(s) 371, 2446, 3007, 3389, 3402, 3984, 4503, 6389
MscI TGGCCA 2 cut(s) 2333, 3548
MslI CAYNNNNRTG 9 cut(s) 993, 1452, 1515, 1950, 3423, 4629, 4939, 5272, 6321
Msp20I TGGCCA 2 cut(s) 2333, 3548
MspA1I CMGCKG 3 cut(s) 515, 2341, 3599
MspCI CTTAAG 1 cut(s) 4139
MspI CCGG 6 cut(s) 331, 593, 946, 4894, 5444, 5712
MunI CAATTG 3 cut(s) 131, 3378, 6056
Mva1269I GAATGC 9 cut(s) 493, 826, 2724, 3827, 4673, 4867, 5128, 5848, 6208
MvnI CGCG 4 cut(s) 18, 20, 515, 2620
NarI GGCGCC 1 cut(s) 218
NciI CCSGG 1 cut(s) 946
NcoI CCATGG 2 cut(s) 2881, 5676
NdeI CATATG 3 cut(s) 1642, 2571, 5273
NheI GCTAGC 1 cut(s) 2006
NmuCI GTSAC 7 cut(s) 90, 1480, 1517, 3731, 3951, 4487, 5798
NsbI TGCGCA 1 cut(s) 5127
NsiI ATGCAT 1 cut(s) 3829
NspV TTCGAA 1 cut(s) 971
OliI CACNNNNGTG 1 cut(s) 1515
PacI TTAATTAA 1 cut(s) 5418
PaeR7I CTCGAG 2 cut(s) 382, 5259
PagI TCATGA 3 cut(s) 2262, 5914, 6316
PauI GCGCGC 1 cut(s) 16
PceI AGGCCT 3 cut(s) 523, 4269, 5045
PciI ACATGT 2 cut(s) 988, 5624
PciSI GCTCTTC 3 cut(s) 744, 1653, 4509
PcsI WCGNNNNNNNCGW 1 cut(s) 3816
PctI GAATGC 9 cut(s) 493, 826, 2724, 3827, 4673, 4867, 5128, 5848, 6208
PdmI GAANNNNTTC 8 cut(s) 371, 2446, 3007, 3389, 3402, 3984, 4503, 6389
PflFI GACNNNGTC 2 cut(s) 143, 3757
PflMI CCANNNNNTGG 1 cut(s) 2584
PfoI TCCNGGA 3 cut(s) 2551, 3515, 4878
Ple19I CGATCG 1 cut(s) 3182
PluTI GGCGCC 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 1964
PpuMI RGGWCCY 2 cut(s) 1343, 4983
PscI ACATGT 2 cut(s) 988, 5624
PshBI ATTAAT 1 cut(s) 5414
PsiI TTATAA 3 cut(s) 767, 2433, 2769
Psp124BI GAGCTC 2 cut(s) 1752, 2647
Psp5II RGGWCCY 2 cut(s) 1343, 4983
PspEI GGTNACC 1 cut(s) 6122
PspPPI RGGWCCY 2 cut(s) 1343, 4983
PsrI GAACNNNNNNTAC 4 cut(s) 3243, 3275, 3733, 3765
PstI CTGCAG 3 cut(s) 1978, 3037, 3168
PstNI CAGNNNCTG 3 cut(s) 313, 3629, 4973
PsuI RGATCY 5 cut(s) 1201, 2848, 4180, 5708, 5872
PsyI GACNNNGTC 2 cut(s) 143, 3757
PteI GCGCGC 1 cut(s) 16
PvuI CGATCG 1 cut(s) 3182
PvuII CAGCTG 1 cut(s) 2341
RseI CAYNNNNRTG 9 cut(s) 993, 1452, 1515, 1950, 3423, 4629, 4939, 5272, 6321
SacI GAGCTC 2 cut(s) 1752, 2647
SacII CCGCGG 1 cut(s) 516
SapI GCTCTTC 3 cut(s) 744, 1653, 4509
ScaI AGTACT 2 cut(s) 2943, 6306
SduI GDGCHC 7 cut(s) 1512, 1752, 2226, 2647, 3967, 4101, 4217
SexAI ACCWGGT 1 cut(s) 141
SfcI CTRYAG 7 cut(s) 1068, 1974, 2076, 3033, 3164, 4444, 4662
SfoI GGCGCC 1 cut(s) 219
Sfr274I CTCGAG 2 cut(s) 382, 5259
Sfr303I CCGCGG 1 cut(s) 516
SfuI TTCGAA 1 cut(s) 971
SgrBI CCGCGG 1 cut(s) 516
SinI GGWCC 9 cut(s) 743, 1343, 1712, 2367, 2575, 4582, 4891, 4983, 6332
SlaI CTCGAG 2 cut(s) 382, 5259
SmiMI CAYNNNNRTG 9 cut(s) 993, 1452, 1515, 1950, 3423, 4629, 4939, 5272, 6321
SmlI CTYRAG 6 cut(s) 382, 1505, 1811, 4139, 5259, 5745
SmoI CTYRAG 6 cut(s) 382, 1505, 1811, 4139, 5259, 5745
SseBI AGGCCT 3 cut(s) 523, 4269, 5045
SspDI GGCGCC 1 cut(s) 217
SspI AATATT 2 cut(s) 1173, 1318
SstI GAGCTC 2 cut(s) 1752, 2647
StuI AGGCCT 3 cut(s) 523, 4269, 5045
StyI CCWWGG 8 cut(s) 183, 2139, 2881, 3491, 3549, 5144, 5676, 6072
TaiI ACGT 6 cut(s) 92, 1966, 2586, 3916, 4680, 5997
TatI WGTACW 8 cut(s) 39, 855, 1444, 2941, 5232, 5836, 6215, 6304
TauI GCSGC 5 cut(s) 218, 392, 515, 518, 4790
TseFI GTSAC 7 cut(s) 90, 1480, 1517, 3731, 3951, 4487, 5798
Tsp45I GTSAC 7 cut(s) 90, 1480, 1517, 3731, 3951, 4487, 5798
TspGWI ACGGA 3 cut(s) 1250, 4229, 5357
Tth111I GACNNNGTC 2 cut(s) 143, 3757
Van91I CCANNNNNTGG 1 cut(s) 2584
Vha464I CTTAAG 1 cut(s) 4139
VneI GTGCAC 2 cut(s) 3963, 4097
VpaK11BI GGWCC 9 cut(s) 743, 1343, 1712, 2367, 2575, 4582, 4891, 4983, 6332
VspI ATTAAT 1 cut(s) 5414
XbaI TCTAGA 1 cut(s) 4253
XcmI CCANNNNNNNNNTGG 1 cut(s) 6079
XhoI CTCGAG 2 cut(s) 382, 5259
XmaJI CCTAGG 2 cut(s) 3491, 5144
XmiI GTMKAC 2 cut(s) 889, 2524
XmnI GAANNNNTTC 8 cut(s) 371, 2446, 3007, 3389, 3402, 3984, 4503, 6389
ZraI GACGTC 1 cut(s) 90
ZrmI AGTACT 2 cut(s) 2943, 6306
Zsp2I ATGCAT 1 cut(s) 3829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.