pycom111g04330

Belongs to the glycosyltransferase 1 family. Bacterial plant glycogen synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
2620212 .. 2623525
3314 bp
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UTR
Exon/CDS
Intron
pycom111g04330.1

Sequence Viewer

Length: 1599 bp
ATGCTAAAAGTTGAGGAGCTTGTTGATCTGAAAGAACCAAGTGAAGAGGAGGTCAATGATGGGGCAACTGGTTTTTCGAGTGAAGATGTAAAGCCTCCTCCTTTGGCTGGGCCTAATGTCATGAATGTCATATTGGTAGCTGCAGAATGTGCTCCATGGTCGAAAACAGGTGGGCTTGGAGATGTTGCTGGGGCCTTACCAAAGGCTTTGGCTCGGCGTGGACACAGGGTCATGGTTGTGGCACCTCGCTACGGTGATTATGCAGAACCCCAAGATTCAGGAGTTCGGAAAGCATATAAAGTTGATGGCCAGTATATGGAAGTAGCATATTTCCATGCCTATATTGATGGTGTAGATTTTGTCTTCATTGAATCTGCTGTGTTCCGTCACATGGAGCACAATATATATGGAGGAAAGCGTGAGGATATTTTAAAACGCATGGTGTTATTTTGCAAGGCAGCAGTTGAAGTCCCTTGGCTTGTCCCCTGTGGCGGTGTTTGCTATGGTGATGGAAACTTGGCTTTCATTGCAAATGATTGGCATACTGCATTGTTGCCGGTGTATTTGAAGGCATATTATCGAGACAATGGTTTAATGATATATACAAGATCCATCCTTGTAATCCATAACATAGCTCACCAGGGTCGGGGGCCAGTAGCTGATTTCTCCTTCGTTGATCTTCCGGGACACTACCTGGACCTTTTCAAAATGTATGACCCTATTGGAGGCGAGCACTTCAATATCTTTGCAGCTGGTCTAAAGACAGCAGACCGTGTGGTTACTGTGAGTCATGGATATGCGTGGGAGCTTAAAACGGTTGACGGTGGTTGGGGATTGCACGGGATCATAAATGAGAATGACTGGAAATTCAGAGGTATTGTTAATGGAATTGACACGGAAGAATGGAATCCCCAGTATGATGTTTTCTTGAAATCAGATGGTTACACGAACTACTCCCTGGAAACACTACAGACTGGCAAGGCTCAGTGTAAGGCAGCCTTACAGAAGGAGCTGGGTTTACCAGTCCGTGAGGATGTCCCGGTAATTGGTTTCATTGGGAGGCTGGATCACCAGAAGGGTGTCGATCTAATAGCAGAGGCAATTCCTTGGATGATGGGTCAGGATGTGCAACTAATCATGTTAGGCTCTGGCAGACCTGACCTGGAAGAGATGCTAAGGGCATTTGAACATCAACACCGAGACAAGGTCAGGGGATGGGTTGGGTTTTCTGTACAAACGGCTCACAGGATAACTGCCGGTGCAGACATTTTGCTCATGCCATCAAGATTTGAGCCGTGTGGACTGAACCAACTATATGCTATGAACTATGGGACAATTCCAGTTGTTCATGCTGTTGGTGGACTAAGAGATACCGTGCATCCTTTCAATCCGTATGAGGAGTCAGGACTTGGGTGGACATTTGACAGCGCTGAGGTTGGTAAGCTAATCCACGCATTAGGGAACTGCTTCTTTACGTATCGAGACTACAAGCAGAGCTGGGAAGGAATCCAGAGACGAGGGATGATGCAAGACCTGAGCTGGGACCATGCTGCTCAGAACTATGAGGAGGTTCTTGTGGCTGCAAAGTACCAATGGTGA

Protein Analysis

533

Amino Acids

59.54

Weight (kDa)

5.45

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_5 PF08323 42 - 284 9.5e-58 Starch synthase catalytic domain
Glycos_transf_1 PF00534 342 - 462 2.6e-15 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 347 - 460 2.4e-16 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012444)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 316
AciI CCGC 1 cut(s) 492
AclWI GGATC 3 cut(s) 603, 851, 1074
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 866
AfaI GTAC 2 cut(s) 1233, 1589
AfeI AGCGCT 1 cut(s) 1429
AgsI TTSAA 8 cut(s) 371, 467, 568, 706, 739, 931, 1187, 1387
AhdI GACNNNNNGTC 1 cut(s) 227
AjnI CCWGG 4 cut(s) 639, 693, 957, 1161
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
Alw21I GWGCWC 3 cut(s) 154, 399, 735
Alw26I GTCTC 4 cut(s) 576, 1194, 1476, 1507
AlwI GGATC 3 cut(s) 603, 851, 1074
AlwNI CAGNNNCTG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 1429
AoxI GGCC 4 cut(s) 110, 192, 307, 650
ApeKI GCWGC 6 cut(s) 140, 458, 749, 995, 1550, 1580
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 1 cut(s) 1466
AspLEI GCGC 1 cut(s) 1430
AspS9I GGNCC 5 cut(s) 110, 192, 650, 697, 1543
AsuC2I CCSGG 2 cut(s) 684, 1040
AsuHPI GGTGA 4 cut(s) 266, 518, 629, 1061
AvaII GGWCC 2 cut(s) 697, 1543
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 154, 399, 735
BbvCI CCTCAGC 1 cut(s) 1431
BbvI GCAGC 6 cut(s) 127, 470, 761, 1007, 1537, 1567
BccI CCATC 9 cut(s) 53, 299, 341, 503, 620, 932, 1108, 1209, 1288
BceAI ACGGC 2 cut(s) 1254, 1279
BciT130I CCWGG 4 cut(s) 641, 695, 959, 1163
BcnI CCSGG 2 cut(s) 684, 1040
BcoDI GTCTC 4 cut(s) 576, 1194, 1476, 1507
BfmI CTRYAG 2 cut(s) 141, 968
BfoI RGCGCY 1 cut(s) 1431
BisI GCNGC 6 cut(s) 141, 459, 750, 996, 1551, 1581
BlsI GCNGC 6 cut(s) 142, 460, 751, 997, 1552, 1582
Bme1390I CCNGG 6 cut(s) 641, 684, 695, 959, 1040, 1163
Bme18I GGWCC 2 cut(s) 697, 1543
BmeRI GACNNNNNGTC 1 cut(s) 227
BmgT120I GGNCC 5 cut(s) 110, 192, 650, 697, 1543
BmiI GGNNCC 4 cut(s) 193, 243, 651, 1544
BmrFI CCNGG 6 cut(s) 641, 684, 695, 959, 1040, 1163
BmrI ACTGGG 1 cut(s) 907
BmsI GCATC 3 cut(s) 1161, 1387, 1515
BmuI ACTGGG 1 cut(s) 907
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 3 cut(s) 1175, 1431, 1535
BpuMI CCSGG 2 cut(s) 684, 1040
BsaAI YACGTR 1 cut(s) 1476
BsaJI CCNNGG 5 cut(s) 155, 473, 640, 957, 1106
Bse118I RCCGGY 2 cut(s) 556, 1256
Bse1I ACTGG 8 cut(s) 73, 310, 653, 866, 913, 979, 1022, 1340
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 4 cut(s) 641, 695, 959, 1163
BseDI CCNNGG 5 cut(s) 155, 473, 640, 957, 1106
BseGI GGATG 7 cut(s) 612, 1039, 1116, 1129, 1220, 1378, 1527
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 4 cut(s) 998, 1422, 1526, 1568
BseNI ACTGG 8 cut(s) 73, 310, 653, 866, 913, 979, 1022, 1340
BseRI GAGGAG 5 cut(s) 29, 62, 87, 1412, 1580
BseXI GCAGC 6 cut(s) 127, 470, 761, 1007, 1537, 1567
BseYI CCCAGC 5 cut(s) 107, 188, 1012, 1497, 1539
BsgI GTGCAG 1 cut(s) 1281
BshFI GGCC 4 cut(s) 112, 194, 309, 652
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 3 cut(s) 154, 399, 735
BsiSI CCGG 4 cut(s) 557, 683, 1040, 1257
BslFI GGGAC 6 cut(s) 455, 467, 699, 1022, 1345, 1556
BsmAI GTCTC 4 cut(s) 576, 1194, 1476, 1507
BsmBI CGTCTC 1 cut(s) 1507
BsmFI GGGAC 6 cut(s) 455, 467, 699, 1022, 1345, 1556
BsnI GGCC 4 cut(s) 112, 194, 309, 652
Bsp1286I GDGCHC 3 cut(s) 154, 399, 735
Bsp1407I TGTACA 1 cut(s) 1231
Bsp143I GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 1 cut(s) 492
BspANI GGCC 4 cut(s) 112, 194, 309, 652
BspCNI CTCAG 4 cut(s) 997, 1423, 1527, 1567
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 193, 243, 651, 1544
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 3 cut(s) 603, 851, 1074
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 2 cut(s) 556, 1256
BsrGI TGTACA 1 cut(s) 1231
BsrI ACTGG 8 cut(s) 73, 310, 653, 866, 913, 979, 1022, 1340
BssAI RCCGGY 2 cut(s) 556, 1256
BssECI CCNNGG 5 cut(s) 155, 473, 640, 957, 1106
BssMI GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
BssT1I CCWWGG 3 cut(s) 155, 473, 1106
Bst2UI CCWGG 4 cut(s) 641, 695, 959, 1163
Bst4CI ACNGT 6 cut(s) 254, 773, 784, 817, 824, 1375
Bst6I CTCTTC 2 cut(s) 39, 1161
BstAPI GCANNNNNTGC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 1231
BstBAI YACGTR 1 cut(s) 1476
BstC8I GCNNGC 1 cut(s) 731
BstDEI CTNAG 6 cut(s) 984, 1175, 1364, 1431, 1535, 1554
BstDSI CCRYGG 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 7 cut(s) 612, 1039, 1116, 1129, 1220, 1378, 1527
BstH2I RGCGCY 1 cut(s) 1431
BstHHI GCGC 1 cut(s) 1430
BstKTI GATC 6 cut(s) 28, 611, 679, 846, 1069, 1087
BstMAI GTCTC 4 cut(s) 576, 1194, 1476, 1507
BstMBI GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
BstMWI GCNNNNNNNGC 3 cut(s) 149, 498, 527
BstNI CCWGG 4 cut(s) 641, 695, 959, 1163
BstSCI CCNGG 6 cut(s) 639, 682, 693, 957, 1038, 1161
BstSFI CTRYAG 2 cut(s) 141, 968
BstSNI TACGTA 1 cut(s) 1476
BstV1I GCAGC 6 cut(s) 127, 470, 761, 1007, 1537, 1567
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 4 cut(s) 112, 194, 309, 652
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 7 cut(s) 612, 1039, 1116, 1129, 1220, 1378, 1527
BtsIMutI CAGTG 1 cut(s) 992
Cac8I GCNNGC 1 cut(s) 731
CaiI CAGNNNCTG 1 cut(s) 659
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 1430
Cfr10I RCCGGY 2 cut(s) 556, 1256
Cfr13I GGNCC 5 cut(s) 110, 192, 650, 697, 1543
Csp6I GTAC 2 cut(s) 1232, 1588
CviQI GTAC 2 cut(s) 1232, 1588
DdeI CTNAG 6 cut(s) 984, 1175, 1364, 1431, 1535, 1554
DpnI GATC 6 cut(s) 27, 610, 678, 845, 1068, 1086
DpnII GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
DraI TTTAAA 1 cut(s) 432
DriI GACNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 39, 1161
Eam1105I GACNNNNNGTC 1 cut(s) 227
EarI CTCTTC 2 cut(s) 39, 1161
Eco105I TACGTA 1 cut(s) 1476
Eco130I CCWWGG 3 cut(s) 155, 473, 1106
Eco47I GGWCC 2 cut(s) 697, 1543
Eco47III AGCGCT 1 cut(s) 1429
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 192
EcoRII CCWGG 4 cut(s) 639, 693, 957, 1161
EcoT14I CCWWGG 3 cut(s) 155, 473, 1106
ErhI CCWWGG 3 cut(s) 155, 473, 1106
Esp3I CGTCTC 1 cut(s) 1507
FalI AAGNNNNNCTT 2 cut(s) 983, 1015
FaqI GGGAC 6 cut(s) 455, 467, 699, 1022, 1345, 1556
Fnu4HI GCNGC 6 cut(s) 141, 459, 750, 996, 1551, 1581
FokI GGATG 7 cut(s) 599, 1046, 1123, 1136, 1227, 1365, 1534
Fsp4HI GCNGC 6 cut(s) 141, 459, 750, 996, 1551, 1581
GlaI GCGC 1 cut(s) 1429
GluI GCNGC 6 cut(s) 141, 459, 750, 996, 1551, 1581
GsaI CCCAGC 5 cut(s) 111, 192, 1016, 1501, 1543
HaeII RGCGCY 1 cut(s) 1431
HaeIII GGCC 4 cut(s) 112, 194, 309, 652
HapII CCGG 4 cut(s) 557, 683, 1040, 1257
HhaI GCGC 1 cut(s) 1430
Hin6I GCGC 1 cut(s) 1428
HinP1I GCGC 1 cut(s) 1428
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 6 cut(s) 275, 371, 787, 907, 1400, 1506
HpaII CCGG 4 cut(s) 557, 683, 1040, 1257
HphI GGTGA 4 cut(s) 266, 518, 629, 1061
Hpy166II GTNNAC 6 cut(s) 221, 820, 1019, 1301, 1361, 1416
Hpy188I TCNGA 5 cut(s) 30, 288, 872, 937, 1557
Hpy188III TCNNGA 9 cut(s) 121, 279, 581, 928, 1121, 1284, 1404, 1481, 1510
Hpy8I GTNNAC 6 cut(s) 221, 820, 1019, 1301, 1361, 1416
HpyAV CCTTC 5 cut(s) 562, 679, 1000, 1069, 1496
HpyCH4III ACNGT 6 cut(s) 254, 773, 784, 817, 824, 1375
HpyCH4IV ACGT 1 cut(s) 1475
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 498, 527
HpyF3I CTNAG 6 cut(s) 984, 1175, 1364, 1431, 1535, 1554
HpySE526I ACGT 1 cut(s) 1475
HspAI GCGC 1 cut(s) 1428
Kzo9I GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
LmnI GCTCC 5 cut(s) 16, 157, 394, 805, 1009
Lsp1109I GCAGC 6 cut(s) 127, 470, 761, 1007, 1537, 1567
LweI GCATC 3 cut(s) 1161, 1387, 1515
MaeII ACGT 1 cut(s) 1475
MaeIII GTNAC 3 cut(s) 386, 778, 941
MalI GATC 6 cut(s) 27, 610, 678, 845, 1068, 1086
MboI GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
MboII GAAGA 6 cut(s) 56, 95, 355, 671, 911, 1178
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 3 cut(s) 154, 399, 735
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 5 cut(s) 866, 888, 1044, 1101, 1335
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 2 cut(s) 796, 1409
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 1 cut(s) 1466
MscI TGGCCA 1 cut(s) 309
MseI TTAA 4 cut(s) 431, 593, 810, 882
MslI CAYNNNNRTG 2 cut(s) 236, 795
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 4 cut(s) 557, 683, 1040, 1257
MspR9I CCNGG 6 cut(s) 641, 684, 695, 959, 1040, 1163
MvaI CCWGG 4 cut(s) 641, 695, 959, 1163
MwoI GCNNNNNNNGC 3 cut(s) 149, 498, 527
NciI CCSGG 2 cut(s) 684, 1040
NcoI CCATGG 1 cut(s) 155
NdeII GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
NlaIV GGNNCC 4 cut(s) 193, 243, 651, 1544
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 386
PagI TCATGA 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 1466
PfeI GAWTC 4 cut(s) 275, 371, 907, 1506
PflFI GACNNNGTC 1 cut(s) 1205
PflMI CCANNNNNTGG 1 cut(s) 316
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 6 cut(s) 142, 460, 751, 997, 1552, 1582
PleI GAGTC 2 cut(s) 795, 1408
PpsI GAGTC 2 cut(s) 795, 1408
Ppu21I YACGTR 1 cut(s) 1476
Psp6I CCWGG 4 cut(s) 639, 693, 957, 1161
PspFI CCCAGC 5 cut(s) 107, 188, 1012, 1497, 1539
PspGI CCWGG 4 cut(s) 639, 693, 957, 1161
PspN4I GGNNCC 4 cut(s) 193, 243, 651, 1544
PspPI GGNCC 5 cut(s) 110, 192, 650, 697, 1543
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 1 cut(s) 608
PsyI GACNNNGTC 1 cut(s) 1205
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 2 cut(s) 1233, 1589
RsaNI GTAC 2 cut(s) 1232, 1588
RseI CAYNNNNRTG 2 cut(s) 236, 795
SaqAI TTAA 4 cut(s) 431, 593, 810, 882
SatI GCNGC 6 cut(s) 141, 459, 750, 996, 1551, 1581
Sau3AI GATC 6 cut(s) 25, 608, 676, 843, 1066, 1084
Sau96I GGNCC 5 cut(s) 110, 192, 650, 697, 1543
SchI GAGTC 2 cut(s) 796, 1409
ScrFI CCNGG 6 cut(s) 641, 684, 695, 959, 1040, 1163
SduI GDGCHC 3 cut(s) 154, 399, 735
SfaNI GCATC 3 cut(s) 1161, 1387, 1515
SfcI CTRYAG 2 cut(s) 141, 968
SinI GGWCC 2 cut(s) 697, 1543
SmiMI CAYNNNNRTG 2 cut(s) 236, 795
SnaBI TACGTA 1 cut(s) 1476
Sse9I AATT 5 cut(s) 866, 888, 1044, 1101, 1335
SsiI CCGC 1 cut(s) 492
StyD4I CCNGG 6 cut(s) 639, 682, 693, 957, 1038, 1161
StyI CCWWGG 3 cut(s) 155, 473, 1106
TaaI ACNGT 6 cut(s) 254, 773, 784, 817, 824, 1375
TaiI ACGT 1 cut(s) 1478
TaqI TCGA 5 cut(s) 77, 161, 580, 1083, 1480
TasI AATT 5 cut(s) 866, 888, 1044, 1101, 1335
TatI WGTACW 1 cut(s) 1231
TfiI GAWTC 4 cut(s) 275, 371, 907, 1506
Tru1I TTAA 4 cut(s) 431, 593, 810, 882
Tru9I TTAA 4 cut(s) 431, 593, 810, 882
TscAI CASTG 1 cut(s) 992
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 6 cut(s) 140, 458, 749, 995, 1550, 1580
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 6 cut(s) 137, 355, 514, 1042, 1337, 1337
TspGWI ACGGA 4 cut(s) 374, 911, 1016, 1380
TspRI CASTG 1 cut(s) 992
Tth111I GACNNNGTC 1 cut(s) 1205
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 2 cut(s) 697, 1543
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 1 cut(s) 866
XmnI GAANNNNTTC 1 cut(s) 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.