Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006803

Physical Location & Seq

Genomic Coordinates Forward (+)

383726 .. 386832

Gene Structure 3107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGTCTCTGATTTTTTCTATCCCAATTTCGGTGGTGTGGAGAATCACATCTATTATCTCTCACAATGCCTTCTCAAGCTCGGTCACAAGGTGGTGGTAATGACTCATGCCTACAACAATCGTTCTGGTGTGAGATATATGACAGGTGGTCTGAAAGTGTATTACGTACCATGGAAACCATTTCTCATGCAGAATACTTTTCCCACCTTTTATGGGACACTTCCAATTGTAAGGACCATCCTTATTCGAGAAAAAATATCGCTGGTCCACGGACATCAAGCTTTCTCAACTCTTTGCCATGAGGCTTTGATGCACGCACGCACAATGGGGTACAAAGTCGTATTTACTGATCATTCACTCTATGGTTTTGCTGATGCTGGAAGCATACACATGAACAAGGTATTGCAGTTTACTTTGGCAGAAGTAAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAAAACACAGTGCTAAGGTCAGGTTTGCCACCTGAAAAGGTCTTTGTAATACCTAATGCAGTTGACACAGCTATGTTCAAGCCTGCACCCGAACGACTGAGTAGTCATGAAATTGTAATTGTTGTTATAAGTAGATTGGTTTACCGAAAGGGTGCAGATCTACTTGTTGAAGTAATTCCAGAAGTATGCCGTTTATATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGACCTAAACGTGTGAGGTTGGAAGAAATGAGGGAAAAACATTCTCTTCAAGATCGAGTTGAAATGCTAGGTGCCGTGCAACACTCTAAAGTACGATCTGTCCTAATTTCTGGCCATATATTCTTAAACAGTTCTTTAACAGAAGCTTTTTGCATAGCGATCTTAGAGGCTGCCAGTTGTGGATTATTAACAGTCAGTACACGTGTAGGAGGTGTCCCAGAGGTACTTCCAGATGACATGGTTGTACTTGCAAAACCAGATCCTAGTGATATGGTTCAAGCAATAGAGAATGCAATATCTATACTTCCTACAATTGACCCACAAGAAATGCACAATCGTATGAAGGAACTGTACAATTGGCATGATGTGGCGAAACGGACAGAAATTGTTTACGACCGTGCGATGAAATGCTCAAATCAAAATCTTTTACAACGACTCTCACGATACCTCTCATGTGGAGCTTGGGCTGGAAAGATTTTCTGCTTAGTTATGATCATTGACTTTCTGTTATGGCATCTGTTGCAACTATGGAAGCCTGAAGAGGATATTGAAGAGGTGCCCGATTTCGTTCTGTCCCATGATCAAGATGAAGGGATCTCGCTGGACAATGCGAACCACAGCTCGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000506 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009893 GO:0009932 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016254 GO:0016740 GO:0016757 GO:0016758 GO:0017176 GO:0019222 GO:0019538 GO:0019637 GO:0022414 GO:0030154 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0051704 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0090407 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903509 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Glycos_transf_1 PIGA

Protein Analysis

439

Amino Acids

49.52

Weight (kDa)

6.68

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	10 - 177	2.9e-29	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	11 - 172	4.4e-13	Glycosyl transferase 4-like domain
PIGA	PF08288	36 - 125	3.9e-43	PIGA (GPI anchor biosynthesis)
Glycos_transf_1	PF00534	185 - 329	2.8e-28	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	192 - 328	6e-26	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45100 AT3G45100 AT3G45100
fragaria_vesca	FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430 FvH4_3g45430
malus_domestica	MD11G1006700.v1.1 MD11G1007700.v1.1
prunus_persica	Prupe.6G004900_v2.0.a1 Prupe.6G143200_v2.0.a1
pyrus_communis	pycom11g00520
rosa_chinensis	RchiOBHm_Chr5g0083231
rosa_laevigata	RLG00000037021
rosa_multiflora	Rmu_ssc0000026.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001260
rosa_rugosa	Rorug05G0483600
rosa_samantha	Rh5AG532900 Rh5BG560100 Rh5CG582800 Rh5DG569400
rosa_wichuraiana	Rw5G050000

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AasI	GACNNNNNNGTC	1 cut(s)	561
AccB1I	GGYRCC	2 cut(s)	758, 1243
AccII	CGCG	1 cut(s)	1312
AclWI	GGATC	2 cut(s)	941, 1289
AcoI	YGGCCR	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	1245
AcvI	CACGTG	1 cut(s)	890
AdeI	CACNNNGTG	1 cut(s)	91
AfaI	GTAC	7 cut(s)	168, 332, 780, 886, 912, 933, 1040
AfiI	CCNNNNNNNGG	2 cut(s)	29, 213
AflIII	ACRYGT	3 cut(s)	697, 887, 889
AgsI	TTSAA	6 cut(s)	538, 629, 737, 749, 965, 1238
AhdI	GACNNNNNGTC	1 cut(s)	147
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	79, 281, 530, 833, 1148, 1308
AluI	AGCT	6 cut(s)	79, 281, 530, 833, 1148, 1308
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	2 cut(s)	941, 1289
AoxI	GGCC	2 cut(s)	432, 799
ApeKI	GCWGC	1 cut(s)	857
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	234, 265, 689
AvaII	GGWCC	3 cut(s)	234, 265, 689
BaeGI	GKGCMC	1 cut(s)	1248
BalI	TGGCCA	1 cut(s)	801
BanI	GGYRCC	2 cut(s)	758, 1243
BarI	GAAGNNNNNNTAC	2 cut(s)	1022, 1054
BbrPI	CACGTG	1 cut(s)	890
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	2 cut(s)	245, 680
BceAI	ACGGC	2 cut(s)	633, 746
BclI	TGATCA	3 cut(s)	349, 1179, 1267
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	755, 951
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	1 cut(s)	858
BlsI	GCNGC	1 cut(s)	859
Bme18I	GGWCC	3 cut(s)	234, 265, 689
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmgT120I	GGNCC	3 cut(s)	234, 265, 689
BmiI	GGNNCC	2 cut(s)	760, 1245
BmsI	GCATC	3 cut(s)	300, 364, 1210
Bpu10I	CCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	2 cut(s)	166, 890
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	170, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 213
Bse1I	ACTGG	1 cut(s)	861
BseDI	CCNNGG	2 cut(s)	170, 268
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	29, 213
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	1 cut(s)	861
BseRI	GAGGAG	1 cut(s)	696
BseSI	GKGCMC	1 cut(s)	1248
BseXI	GCAGC	1 cut(s)	844
BsgI	GTGCAG	2 cut(s)	528, 633
Bsh1236I	CGCG	1 cut(s)	1312
Bsh1285I	CGRYCG	1 cut(s)	1084
BshFI	GGCC	2 cut(s)	434, 801
BshNI	GGYRCC	2 cut(s)	758, 1243
BsiEI	CGRYCG	1 cut(s)	1084
BslFI	GGGAC	3 cut(s)	229, 887, 1246
BslI	CCNNNNNNNGG	2 cut(s)	29, 213
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	3 cut(s)	229, 887, 1246
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	2 cut(s)	434, 801
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	1248
Bsp1407I	TGTACA	1 cut(s)	1038
Bsp143I	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
Bsp19I	CCATGG	1 cut(s)	170
Bsp68I	TCGCGA	1 cut(s)	1312
BspANI	GGCC	2 cut(s)	434, 801
BspCNI	CTCAG	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	1312
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	760, 1245
BspPI	GGATC	2 cut(s)	941, 1289
BspT107I	GGYRCC	2 cut(s)	758, 1243
BspTNI	GGTCTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	1038
BsrI	ACTGG	1 cut(s)	861
BssECI	CCNNGG	2 cut(s)	170, 268
BssMI	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	5 cut(s)	469, 818, 880, 1038, 1085
Bst6I	CTCTTC	3 cut(s)	738, 1221, 1233
BstAPI	GCANNNNNTGC	1 cut(s)	1207
BstAUI	TGTACA	1 cut(s)	1038
BstBAI	YACGTR	2 cut(s)	166, 890
BstC8I	GCNNGC	4 cut(s)	315, 319, 543, 1310
BstDEI	CTNAG	4 cut(s)	473, 557, 850, 1171
BstDSI	CCRYGG	2 cut(s)	170, 268
BstF5I	GGATG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	1312
BstKTI	GATC	9 cut(s)	352, 619, 742, 785, 849, 949, 1182, 1270, 1284
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
BstMCI	CGRYCG	1 cut(s)	1084
BstMWI	GCNNNNNNNGC	1 cut(s)	1207
BstSLI	GKGCMC	1 cut(s)	1248
BstSNI	TACGTA	1 cut(s)	166
BstUI	CGCG	1 cut(s)	1312
BstV1I	GCAGC	1 cut(s)	844
BstX2I	RGATCY	3 cut(s)	616, 946, 1281
BstYI	RGATCY	3 cut(s)	616, 946, 1281
BsuRI	GGCC	2 cut(s)	434, 801
BtgI	CCRYGG	2 cut(s)	170, 268
BtgZI	GCGATG	1 cut(s)	1103
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	474
BtuMI	TCGCGA	1 cut(s)	1312
Cac8I	GCNNGC	4 cut(s)	315, 319, 543, 1310
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	3 cut(s)	234, 265, 689
Csp6I	GTAC	7 cut(s)	167, 331, 779, 885, 911, 932, 1039
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviQI	GTAC	7 cut(s)	167, 331, 779, 885, 911, 932, 1039
DdeI	CTNAG	4 cut(s)	473, 557, 850, 1171
DpnI	GATC	9 cut(s)	351, 618, 741, 784, 848, 948, 1181, 1269, 1283
DpnII	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
DraIII	CACNNNGTG	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	561
DriI	GACNNNNNGTC	1 cut(s)	147
DseDI	GACNNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	3 cut(s)	738, 1221, 1233
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	3 cut(s)	738, 1221, 1233
Eco105I	TACGTA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	3 cut(s)	234, 265, 689
Eco57I	CTGAAG	1 cut(s)	1245
Eco72I	CACGTG	1 cut(s)	890
EcoT14I	CCWWGG	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	170
FaqI	GGGAC	3 cut(s)	229, 887, 1246
FbaI	TGATCA	3 cut(s)	349, 1179, 1267
Fnu4HI	GCNGC	1 cut(s)	858
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	858
FspBI	CTAG	2 cut(s)	755, 951
GluI	GCNGC	1 cut(s)	858
HaeIII	GGCC	2 cut(s)	434, 801
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	2 cut(s)	279, 831
HinfI	GANTC	3 cut(s)	43, 103, 1122
Hpy166II	GTNNAC	6 cut(s)	268, 411, 523, 601, 887, 1078
Hpy188I	TCNGA	2 cut(s)	10, 153
Hpy188III	TCNNGA	8 cut(s)	248, 566, 638, 737, 917, 1128, 1271, 1311
Hpy8I	GTNNAC	6 cut(s)	268, 411, 523, 601, 887, 1078
HpyAV	CCTTC	3 cut(s)	80, 1024, 1271
HpyCH4III	ACNGT	5 cut(s)	469, 818, 880, 1038, 1085
HpyCH4IV	ACGT	3 cut(s)	165, 697, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1207
HpyF3I	CTNAG	4 cut(s)	473, 557, 850, 1171
HpySE526I	ACGT	3 cut(s)	165, 697, 889
Ksp22I	TGATCA	3 cut(s)	349, 1179, 1267
Kzo9I	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
LmnI	GCTCC	1 cut(s)	1145
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	3 cut(s)	300, 364, 1210
MaeI	CTAG	2 cut(s)	755, 951
MaeII	ACGT	3 cut(s)	165, 697, 889
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	9 cut(s)	351, 618, 741, 784, 848, 948, 1181, 1269, 1283
MboI	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
MboII	GAAGA	4 cut(s)	722, 725, 1238, 1250
MfeI	CAATTG	3 cut(s)	225, 999, 1042
MflI	RGATCY	3 cut(s)	616, 946, 1281
MhlI	GDGCHC	1 cut(s)	1248
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	9 cut(s)	25, 225, 570, 576, 633, 792, 999, 1042, 1071
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	97, 1116
MmeI	TCCRAC	2 cut(s)	658, 687
Mox20I	TGGCCA	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	3 cut(s)	812, 824, 875
MslI	CAYNNNNRTG	2 cut(s)	389, 530
Msp20I	TGGCCA	1 cut(s)	801
MunI	CAATTG	3 cut(s)	225, 999, 1042
Mva1269I	GAATGC	1 cut(s)	982
MvnI	CGCG	1 cut(s)	1312
MwoI	GCNNNNNNNGC	1 cut(s)	1207
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
NlaIV	GGNNCC	2 cut(s)	760, 1245
NmuCI	GTSAC	1 cut(s)	83
NruI	TCGCGA	1 cut(s)	1312
PagI	TCATGA	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	1126
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	859
PleI	GAGTC	2 cut(s)	97, 1116
PmaCI	CACGTG	1 cut(s)	890
PmlI	CACGTG	1 cut(s)	890
PpsI	GAGTC	2 cut(s)	97, 1116
Ppu21I	YACGTR	2 cut(s)	166, 890
PsiI	TTATAA	1 cut(s)	587
PspCI	CACGTG	1 cut(s)	890
PspN4I	GGNNCC	2 cut(s)	760, 1245
PspPI	GGNCC	3 cut(s)	234, 265, 689
PsuI	RGATCY	3 cut(s)	616, 946, 1281
RruI	TCGCGA	1 cut(s)	1312
RsaI	GTAC	7 cut(s)	168, 332, 780, 886, 912, 933, 1040
RsaNI	GTAC	7 cut(s)	167, 331, 779, 885, 911, 932, 1039
RseI	CAYNNNNRTG	2 cut(s)	389, 530
SaqAI	TTAA	3 cut(s)	812, 824, 875
SatI	GCNGC	1 cut(s)	858
Sau3AI	GATC	9 cut(s)	349, 616, 739, 782, 846, 946, 1179, 1267, 1281
Sau96I	GGNCC	3 cut(s)	234, 265, 689
SchI	GAGTC	2 cut(s)	97, 1116
SduI	GDGCHC	1 cut(s)	1248
SfaNI	GCATC	3 cut(s)	300, 364, 1210
SinI	GGWCC	3 cut(s)	234, 265, 689
SmiMI	CAYNNNNRTG	2 cut(s)	389, 530
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SnaBI	TACGTA	1 cut(s)	166
Sse9I	AATT	9 cut(s)	25, 225, 570, 576, 633, 792, 999, 1042, 1071
SspMI	CTAG	2 cut(s)	755, 951
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	5 cut(s)	469, 818, 880, 1038, 1085
TaiI	ACGT	3 cut(s)	168, 700, 892
TaqI	TCGA	2 cut(s)	247, 742
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	9 cut(s)	25, 225, 570, 576, 633, 792, 999, 1042, 1071
TatI	WGTACW	3 cut(s)	884, 931, 1038
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	812, 824, 875
Tru9I	TTAA	3 cut(s)	812, 824, 875
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	6 cut(s)	407, 582, 661, 1043, 1106, 1290
TspGWI	ACGGA	2 cut(s)	285, 1078
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	3 cut(s)	234, 265, 689
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	755, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.