pycom11g01650

Selenoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009575
Physical Location & Seq
Forward (+)
1435895 .. 1438657
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
ATGCAAATCCTTTCGCATTTCTCCTCTAAAGCCTCCTCCACACTCTCCTCACTTTCCCTCCCACGCCCCTCTCTGTCTACCGCCCTCAACTTCCGCCGTCGCCCTTCCAAATTCCCATTTTACCCCTCCAACAACTTTGGAATTCCCAGGCTGCCCCTCCTCGCATGCAACCTCAGCTCCGGCCGCAGCCAACAGCAAGTTCCCATGGACTCACCCCCGCCGGAGGCCACCGCCGCGTCGGTCGACTCCGTGACGCACGATTTGCAGAATCAGAGCTTGGCCGGCGATGAGAAGATTCGCAAGAGCGAGAGCAATGGTGTAAGTAACACTCACAGGGTAAGGTTGAAGCTCGAAGATCTAAATTGGGATAACTCGTTTACCAGAGAGCTACCTGGCGATCCCCGGACTGATACGATTCCACGAGAGGTGTTGCATGCTTGTTATACGAAAGTGTCCCCATCAGCTGAAGTCGAAAATCCTCAGCTTGTTGCATGGTCAGAATCAGTCGCCGAGTTTCTTGATTTGGATCCTAAAGAATTTGAAAGGCCAGACTTCCCTCTTTTATTCTCTGGGGCGTCTCCTTTAGTGGGATCGTTGCCTTATGCTCAGTGCTATGGTGGACATCAATTTGGCATGTGGGCTGGGCAGTTGGGAGATGGGCGGGCTATTACTCTTGGGGAGGTTCTTAATTCTAAGTCTGAGAGATGGGAACTTCAGCTTAAAGGTGCTGGGAAGACTCCTTACAGTCGGTTTGCAGATGGCCTTGCTGTGCTTCGCAGTAGCATCCGGGAATTCCTCTGCAGTGAAGCAATGCATAATCTTGGAATTCCAACAACTCGAGCTCTCTGTCTTGTGACCACAGGAAAATTTGTCACGCGTGACATGTTCTATGATGGCAATCCAAAAGAGGAGCCCGGTGCAATTGTTTGCAGGGTTTCTCCATCATTTCTGCGTTTTGGGTCATACCAAATACACGCTGCTAGAGAAAAAGAGGACCTTGAAATTGTTCGTACTCTTGCAGACTATGCCATTAGGCATCACTTTCCTCATATAGAGAACATGAGTAGAAGCGAGAGTTTATCTTTCAACACAGGCAATGAAGAAGTTCTTTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0061

Protein Analysis

373

Amino Acids

41.39

Weight (kDa)

6.23

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelO PF02696 145 - 358 2.2e-59 Protein adenylyltransferase SelO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 77, 243
AccII CGCG 2 cut(s) 236, 877
AciI CCGC 7 cut(s) 81, 94, 184, 218, 231, 234, 661
AclWI GGATC 4 cut(s) 392, 521, 534, 598
AcoI YGGCCR 2 cut(s) 181, 279
AcsI RAATTY 6 cut(s) 110, 141, 536, 791, 825, 866
AcuI CTGAAG 2 cut(s) 486, 698
AcyI GRCGYC 1 cut(s) 575
AfaI GTAC 1 cut(s) 1012
AfiI CCNNNNNNNGG 2 cut(s) 223, 587
AflIII ACRYGT 2 cut(s) 875, 882
AgsI TTSAA 4 cut(s) 346, 542, 1001, 1087
AjnI CCWGG 2 cut(s) 146, 391
AjuI GAANNNNNNNTTGG 4 cut(s) 183, 215, 260, 292
AluBI AGCT 8 cut(s) 177, 276, 349, 388, 464, 484, 718, 842
AluI AGCT 8 cut(s) 177, 276, 349, 388, 464, 484, 718, 842
Alw21I GWGCWC 1 cut(s) 844
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 4 cut(s) 392, 521, 534, 598
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 5 cut(s) 181, 225, 279, 545, 760
ApeKI GCWGC 3 cut(s) 151, 186, 977
ApoI RAATTY 6 cut(s) 110, 141, 536, 791, 825, 866
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
Asp700I GAANNNNTTC 2 cut(s) 1005, 1104
AspS9I GGNCC 1 cut(s) 994
AsuC2I CCSGG 3 cut(s) 403, 788, 915
AsuHPI GGTGA 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 994
BamHI GGATCC 1 cut(s) 526
BanII GRGCYC 2 cut(s) 844, 915
BarI GAAGNNNNNNTAC 2 cut(s) 725, 757
BauI CACGAG 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 1 cut(s) 844
BbvCI CCTCAGC 2 cut(s) 173, 480
BbvI GCAGC 3 cut(s) 138, 198, 964
BccI CCATC 6 cut(s) 466, 650, 699, 752, 887, 949
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 148, 393
BcnI CCSGG 3 cut(s) 403, 788, 915
BcoDI GTCTC 1 cut(s) 582
BfaI CTAG 1 cut(s) 981
BfmI CTRYAG 1 cut(s) 799
BglII AGATCT 1 cut(s) 355
BisI GCNGC 5 cut(s) 152, 184, 187, 234, 978
BlsI GCNGC 5 cut(s) 153, 185, 188, 235, 979
Bme1390I CCNGG 5 cut(s) 148, 393, 403, 788, 915
Bme18I GGWCC 1 cut(s) 994
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 1 cut(s) 994
BmiI GGNNCC 2 cut(s) 528, 912
BmrFI CCNGG 5 cut(s) 148, 393, 403, 788, 915
BmsI GCATC 2 cut(s) 792, 1045
BpiI GAAGAC 1 cut(s) 740
Bpu10I CCTNAGC 2 cut(s) 173, 480
BpuMI CCSGG 3 cut(s) 403, 788, 915
BsaBI GATNNNNATC 2 cut(s) 525, 897
BsaHI GRCGYC 1 cut(s) 575
BsaJI CCNNGG 3 cut(s) 146, 204, 401
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 161, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 587
Bse118I RCCGGY 1 cut(s) 281
Bse3DI GCAATG 3 cut(s) 319, 816, 1102
Bse8I GATNNNNATC 2 cut(s) 525, 897
BseBI CCWGG 2 cut(s) 148, 393
BseDI CCNNGG 3 cut(s) 146, 204, 401
BseGI GGATG 1 cut(s) 783
BseJI GATNNNNATC 2 cut(s) 525, 897
BseLI CCNNNNNNNGG 2 cut(s) 223, 587
BseMI GCAATG 3 cut(s) 319, 816, 1102
BseMII CTCAG 4 cut(s) 187, 494, 620, 690
BseRI GAGGAG 5 cut(s) 13, 25, 37, 149, 923
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 138, 198, 964
BseYI CCCAGC 2 cut(s) 641, 728
Bsh1236I CGCG 2 cut(s) 236, 877
Bsh1285I CGRYCG 2 cut(s) 184, 243
BshFI GGCC 5 cut(s) 183, 227, 281, 547, 762
BsiEI CGRYCG 2 cut(s) 184, 243
BsiHKAI GWGCWC 1 cut(s) 844
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 6 cut(s) 180, 221, 282, 403, 787, 915
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 2 cut(s) 223, 587
BsmAI GTCTC 1 cut(s) 582
BsmBI CGTCTC 1 cut(s) 582
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 5 cut(s) 183, 227, 281, 547, 762
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 844, 915
Bsp143I GATC 4 cut(s) 355, 397, 526, 590
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 7 cut(s) 81, 94, 184, 218, 231, 234, 661
BspANI GGCC 5 cut(s) 183, 227, 281, 547, 762
BspCNI CTCAG 4 cut(s) 186, 493, 619, 691
BspFNI CGCG 2 cut(s) 236, 877
BspLI GGNNCC 2 cut(s) 528, 912
BspMAI CTGCAG 1 cut(s) 803
BspPI GGATC 4 cut(s) 392, 521, 534, 598
BsrDI GCAATG 3 cut(s) 319, 816, 1102
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 146, 204, 401
BssMI GATC 4 cut(s) 355, 397, 526, 590
BssNI GRCGYC 1 cut(s) 575
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 148, 393
Bst4CI ACNGT 1 cut(s) 746
BstACI GRCGYC 1 cut(s) 575
BstAPI GCANNNNNTGC 2 cut(s) 262, 1025
BstC8I GCNNGC 4 cut(s) 166, 283, 435, 663
BstDEI CTNAG 5 cut(s) 173, 480, 606, 693, 699
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 783
BstFNI CGCG 2 cut(s) 236, 877
BstKTI GATC 4 cut(s) 358, 400, 529, 593
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 4 cut(s) 355, 397, 526, 590
BstMCI CGRYCG 2 cut(s) 184, 243
BstMWI GCNNNNNNNGC 6 cut(s) 174, 183, 233, 262, 282, 1025
BstNI CCWGG 2 cut(s) 148, 393
BstNSI RCATGY 4 cut(s) 168, 437, 637, 886
BstSCI CCNGG 5 cut(s) 146, 391, 401, 786, 913
BstSFI CTRYAG 1 cut(s) 799
BstUI CGCG 2 cut(s) 236, 877
BstV1I GCAGC 3 cut(s) 138, 198, 964
BstV2I GAAGAC 1 cut(s) 740
BstX2I RGATCY 2 cut(s) 355, 526
BstYI RGATCY 2 cut(s) 355, 526
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 5 cut(s) 183, 227, 281, 547, 762
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 783
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 614, 808
Cac8I GCNNGC 4 cut(s) 166, 283, 435, 663
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 994
CseI GACGC 3 cut(s) 225, 262, 564
Csp6I GTAC 1 cut(s) 1011
CviAII CATG 7 cut(s) 165, 205, 434, 492, 634, 883, 1060
CviQI GTAC 1 cut(s) 1011
DdeI CTNAG 5 cut(s) 173, 480, 606, 693, 699
DpnI GATC 4 cut(s) 357, 399, 528, 592
DpnII GATC 4 cut(s) 355, 397, 526, 590
EaeI YGGCCR 2 cut(s) 181, 279
EagI CGGCCG 1 cut(s) 181
EciI GGCGGA 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 842
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 844, 915
Eco47I GGWCC 1 cut(s) 994
Eco52I CGGCCG 1 cut(s) 181
Eco53kI GAGCTC 1 cut(s) 842
Eco57I CTGAAG 2 cut(s) 486, 698
Eco88I CYCGRG 1 cut(s) 837
EcoICRI GAGCTC 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 994
EcoRI GAATTC 3 cut(s) 141, 791, 825
EcoRII CCWGG 2 cut(s) 146, 391
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 816
EcoT38I GRGCYC 2 cut(s) 844, 915
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 582
FaeI CATG 7 cut(s) 168, 208, 437, 495, 637, 886, 1063
FalI AAGNNNNNCTT 3 cut(s) 981, 1013, 1092
FaqI GGGAC 1 cut(s) 439
FatI CATG 7 cut(s) 164, 204, 433, 491, 633, 882, 1059
FauI CCCGC 2 cut(s) 225, 654
FblI GTMKAC 2 cut(s) 77, 243
Fnu4HI GCNGC 5 cut(s) 152, 184, 187, 234, 978
FokI GGATG 1 cut(s) 770
FriOI GRGCYC 2 cut(s) 844, 915
Fsp4HI GCNGC 5 cut(s) 152, 184, 187, 234, 978
FspBI CTAG 1 cut(s) 981
GluI GCNGC 5 cut(s) 152, 184, 187, 234, 978
GsaI CCCAGC 2 cut(s) 645, 732
HaeIII GGCC 5 cut(s) 183, 227, 281, 547, 762
HapII CCGG 6 cut(s) 180, 221, 282, 403, 787, 915
HgaI GACGC 3 cut(s) 225, 262, 564
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 7 cut(s) 168, 208, 437, 495, 637, 886, 1063
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 209, 245, 268, 295, 415, 500, 736
HpaII CCGG 6 cut(s) 180, 221, 282, 403, 787, 915
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 4 cut(s) 78, 244, 378, 620
Hpy188I TCNGA 3 cut(s) 273, 499, 700
Hpy188III TCNNGA 1 cut(s) 518
Hpy8I GTNNAC 4 cut(s) 78, 244, 378, 620
Hpy99I CGWCG 2 cut(s) 102, 241
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 1 cut(s) 746
HpyF10VI GCNNNNNNNGC 6 cut(s) 174, 183, 233, 262, 282, 1025
HpyF3I CTNAG 5 cut(s) 173, 480, 606, 693, 699
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 7 cut(s) 168, 208, 437, 495, 637, 886, 1063
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Kzo9I GATC 4 cut(s) 355, 397, 526, 590
LmnI GCTCC 2 cut(s) 182, 910
Lsp1109I GCAGC 3 cut(s) 138, 198, 964
LweI GCATC 2 cut(s) 792, 1045
MaeI CTAG 1 cut(s) 981
MaeIII GTNAC 5 cut(s) 250, 323, 853, 871, 878
MalI GATC 4 cut(s) 357, 399, 528, 592
MboI GATC 4 cut(s) 355, 397, 526, 590
MboII GAAGA 4 cut(s) 304, 365, 745, 1112
MfeI CAATTG 1 cut(s) 921
MflI RGATCY 2 cut(s) 355, 526
MhlI GDGCHC 2 cut(s) 844, 915
MluI ACGCGT 1 cut(s) 875
MlyI GAGTC 3 cut(s) 203, 239, 730
MmeI TCCRAC 2 cut(s) 153, 854
Mph1103I ATGCAT 1 cut(s) 816
MroNI GCCGGC 1 cut(s) 281
MroXI GAANNNNTTC 2 cut(s) 1005, 1104
MseI TTAA 2 cut(s) 687, 720
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 6 cut(s) 180, 221, 282, 403, 787, 915
MspR9I CCNGG 5 cut(s) 148, 393, 403, 788, 915
MunI CAATTG 1 cut(s) 921
MvaI CCWGG 2 cut(s) 148, 393
MvnI CGCG 2 cut(s) 236, 877
MwoI GCNNNNNNNGC 6 cut(s) 174, 183, 233, 262, 282, 1025
NaeI GCCGGC 1 cut(s) 283
NciI CCSGG 3 cut(s) 403, 788, 915
NcoI CCATGG 1 cut(s) 204
NdeII GATC 4 cut(s) 355, 397, 526, 590
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 7 cut(s) 168, 208, 437, 495, 637, 886, 1063
NlaIV GGNNCC 2 cut(s) 528, 912
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 4 cut(s) 250, 853, 871, 878
NsiI ATGCAT 1 cut(s) 816
NspI RCATGY 4 cut(s) 168, 437, 637, 886
PaeI GCATGC 2 cut(s) 168, 437
PaeR7I CTCGAG 1 cut(s) 837
PciI ACATGT 1 cut(s) 882
PdiI GCCGGC 1 cut(s) 283
PdmI GAANNNNTTC 2 cut(s) 1005, 1104
PfeI GAWTC 4 cut(s) 268, 295, 415, 500
PfoI TCCNGGA 1 cut(s) 786
PkrI GCNGC 5 cut(s) 153, 185, 188, 235, 979
PleI GAGTC 3 cut(s) 203, 239, 730
PpsI GAGTC 3 cut(s) 203, 239, 730
PpuMI RGGWCCY 1 cut(s) 994
PscI ACATGT 1 cut(s) 882
Psp124BI GAGCTC 1 cut(s) 844
Psp5II RGGWCCY 1 cut(s) 994
Psp6I CCWGG 2 cut(s) 146, 391
PspFI CCCAGC 2 cut(s) 641, 728
PspGI CCWGG 2 cut(s) 146, 391
PspN4I GGNNCC 2 cut(s) 528, 912
PspPI GGNCC 1 cut(s) 994
PspPPI RGGWCCY 1 cut(s) 994
PspXI VCTCGAGB 1 cut(s) 837
PstI CTGCAG 1 cut(s) 803
PsuI RGATCY 2 cut(s) 355, 526
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 1 cut(s) 1012
RsaNI GTAC 1 cut(s) 1011
SacI GAGCTC 1 cut(s) 844
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 687, 720
SatI GCNGC 5 cut(s) 152, 184, 187, 234, 978
Sau3AI GATC 4 cut(s) 355, 397, 526, 590
Sau96I GGNCC 1 cut(s) 994
SchI GAGTC 3 cut(s) 203, 239, 730
ScrFI CCNGG 5 cut(s) 148, 393, 403, 788, 915
SduI GDGCHC 2 cut(s) 844, 915
SfaNI GCATC 2 cut(s) 792, 1045
SfcI CTRYAG 1 cut(s) 799
Sfr274I CTCGAG 1 cut(s) 837
SinI GGWCC 1 cut(s) 994
SlaI CTCGAG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 837
SmoI CTYRAG 1 cut(s) 837
SphI GCATGC 2 cut(s) 168, 437
SsiI CCGC 7 cut(s) 81, 94, 184, 218, 231, 234, 661
SspMI CTAG 1 cut(s) 981
SstI GAGCTC 1 cut(s) 844
StyD4I CCNGG 5 cut(s) 146, 391, 401, 786, 913
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 746
TaqI TCGA 4 cut(s) 243, 351, 471, 838
TaqII GACCGA 1 cut(s) 229
TauI GCSGC 2 cut(s) 186, 236
TfiI GAWTC 4 cut(s) 268, 295, 415, 500
Tru1I TTAA 2 cut(s) 687, 720
Tru9I TTAA 2 cut(s) 687, 720
TscAI CASTG 2 cut(s) 614, 808
TseFI GTSAC 4 cut(s) 250, 853, 871, 878
TseI GCWGC 3 cut(s) 151, 186, 977
Tsp45I GTSAC 4 cut(s) 250, 853, 871, 878
TspDTI ATGAA 1 cut(s) 1113
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 2 cut(s) 614, 808
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 6 cut(s) 110, 141, 536, 791, 825, 866
XceI RCATGY 4 cut(s) 168, 437, 637, 886
XhoI CTCGAG 1 cut(s) 837
XmiI GTMKAC 2 cut(s) 77, 243
XmnI GAANNNNTTC 2 cut(s) 1005, 1104
XspI CTAG 1 cut(s) 981
Zsp2I ATGCAT 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.