Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0019320

Physical Location & Seq

Genomic Coordinates Forward (+)

1803525 .. 1804716

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGACCAGACTCAGACTATCACCAGATTCAGGGGAACTCGAGGCTTCGTTTCCCTCGAATGGTTAAAAAACATGCCTATCACAGCAAAGTTCGATGTTTACAGCTATGGCATTATGCCGCTAGAGATTATATGCTGCAGGAGGAACTTTGACGAGGAGGCAAAGGATGAAGATCAAATGGTTATAGTAGATTGGGCATACAATTGCTACGAGCAAAACAAACTGCACCAGCTATTCCAGAATGACGATGAGGCAATGGAAGACATCAAGAATATGGAGAAGTACGTTATGATCACAATGTGGTGCATTCAAGAGGATCCGTTGCTGAGATCCACAGCAAAAAAACTAACAATGATGCTCAAAGGAGCCGAGGAAGCCTCGGTTCCACCAGATCCATCCCCCATAACAAGTTCAGGCCATACTCTCAAGTCAATCAAGCAAAAGATCACATCCTTGCATAAATCAAACCAAACTTCGATTAACCATAAATCTTCCAAGGTTTCAACTTTACATATCAATTTTCAAAACCCATTACCAATCATAAAAAGTCCACTACATTCTGCAGAAATTCAAAACCCTAAGATTTGGGGATTCTTAAGCCCTCTCGCCCCTAATCCTGCGAGCAAGCTGGATGTCCTTGGGCATTATGGTGACCCTCTTGGCATGAATAGCGCAGAGGTTGGTGTCCTCAAACAGACCCACCAAGTACGCCTCCGCCGCCTCCTGGAGCGCCGACACCGCGCTGCTCTGGAACCTCAGATCGGTCTTGAAATCCTGTGCGATCTCCCTCACAAGCCTCTGGAACGGAAGCTTGCGGATCAGGAGCTCAGTGCTCTTCTGGTACTTCCTGATTTCCCTCAGCGCCACAGTTCCCGGCCTGAAGCGGTGGGGCTTCTTCACTCCACCGGTCGCCGGAGCAGACTTCCTAGCAGCCTTAGTTGCCAGCTGCTTCCTCGGTGCCTTTCCTCCGGTGGACTTGCGAGCAGTCTGCTTGGTACGAGCCATCTGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase

Protein Analysis

339

Amino Acids

38.16

Weight (kDa)

8.6

Isoelectric Point (pI)

48.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019320)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g28520 pycom11g02110
rosa_laevigata	RLG00000036715
rosa_roxburghii	Rroxscaffold_1G00004320 Rroxscaffold_1G00066650 Rroxscaffold_1G00067350 Rroxscaffold_6G00389990
rosa_samantha	Rh5AG074500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	957
AccII	CGCG	1 cut(s)	741
AciI	CCGC	6 cut(s)	119, 715, 718, 739, 815, 884
AclWI	GGATC	5 cut(s)	311, 324, 324, 386, 825
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	900
AdeI	CACNNNGTG	1 cut(s)	300
AfaI	GTAC	4 cut(s)	284, 708, 843, 997
AfiI	CCNNNNNNNGG	5 cut(s)	30, 60, 724, 761, 912
AflII	CTTAAG	1 cut(s)	595
AgeI	ACCGGT	1 cut(s)	905
AgsI	TTSAA	5 cut(s)	311, 504, 524, 572, 770
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	6 cut(s)	105, 232, 628, 811, 826, 946
AluI	AGCT	6 cut(s)	105, 232, 628, 811, 826, 946
Alw21I	GWGCWC	2 cut(s)	828, 835
AlwI	GGATC	5 cut(s)	311, 324, 324, 386, 825
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	415, 875
ApeKI	GCWGC	4 cut(s)	135, 743, 930, 946
ApoI	RAATTY	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	905
AspLEI	GCGC	4 cut(s)	674, 732, 743, 864
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	874
AsuHPI	GGTGA	2 cut(s)	13, 662
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	957
BanII	GRGCYC	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	2 cut(s)	828, 835
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	4 cut(s)	122, 730, 933, 942
BccI	CCATC	2 cut(s)	403, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	970, 1004
BciT130I	CCWGG	1 cut(s)	725
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	874
BfaI	CTAG	2 cut(s)	122, 927
BfmI	CTRYAG	2 cut(s)	136, 561
BfoI	RGCGCY	2 cut(s)	733, 865
BfrI	CTTAAG	1 cut(s)	595
BisI	GCNGC	6 cut(s)	119, 136, 718, 744, 931, 947
BlsI	GCNGC	6 cut(s)	120, 137, 719, 745, 932, 948
Bme1390I	CCNGG	2 cut(s)	725, 874
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	5 cut(s)	318, 367, 384, 753, 959
BmrFI	CCNGG	2 cut(s)	725, 874
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	1 cut(s)	746
Bpu10I	CCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	874
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	5 cut(s)	369, 378, 495, 637, 953
BsaWI	WCCGGW	2 cut(s)	905, 968
Bsc4I	CCNNNNNNNGG	5 cut(s)	30, 60, 724, 761, 912
Bse118I	RCCGGY	1 cut(s)	905
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	5 cut(s)	369, 378, 495, 637, 953
BseGI	GGATG	4 cut(s)	172, 395, 449, 637
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	5 cut(s)	30, 60, 724, 761, 912
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	5 cut(s)	26, 317, 770, 841, 872
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	4 cut(s)	122, 730, 933, 942
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	741
Bsh1285I	CGRYCG	1 cut(s)	910
BshFI	GGCC	2 cut(s)	417, 877
BshNI	GGYRCC	1 cut(s)	957
BshTI	ACCGGT	1 cut(s)	905
BsiEI	CGRYCG	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	828, 835
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	874, 906, 913, 969
BslI	CCNNNNNNNGG	5 cut(s)	30, 60, 724, 761, 912
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	417, 877
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	828, 835
Bsp143I	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
BspACI	CCGC	6 cut(s)	119, 715, 718, 739, 815, 884
BspANI	GGCC	2 cut(s)	417, 877
BspCNI	CTCAG	5 cut(s)	25, 318, 769, 840, 871
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	5 cut(s)	318, 367, 384, 753, 959
BspMAI	CTGCAG	2 cut(s)	140, 565
BspPI	GGATC	5 cut(s)	311, 324, 324, 386, 825
BspQI	GCTCTTC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	957
BspTI	CTTAAG	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	905
BssAI	RCCGGY	1 cut(s)	905
BssECI	CCNNGG	5 cut(s)	369, 378, 495, 637, 953
BssMI	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
BssT1I	CCWWGG	2 cut(s)	495, 637
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	869
Bst6I	CTCTTC	1 cut(s)	840
BstAFI	CTTAAG	1 cut(s)	595
BstC8I	GCNNGC	5 cut(s)	622, 626, 813, 944, 982
BstDEI	CTNAG	7 cut(s)	12, 326, 579, 756, 827, 858, 935
BstEII	GGTNACC	1 cut(s)	650
BstF5I	GGATG	4 cut(s)	172, 395, 449, 637
BstFNI	CGCG	1 cut(s)	741
BstH2I	RGCGCY	2 cut(s)	733, 865
BstHHI	GCGC	4 cut(s)	674, 732, 743, 864
BstKTI	GATC	9 cut(s)	175, 294, 319, 332, 394, 447, 762, 784, 820
BstMBI	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
BstMCI	CGRYCG	1 cut(s)	910
BstMWI	GCNNNNNNNGC	5 cut(s)	374, 669, 717, 738, 939
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	2 cut(s)	723, 872
BstSFI	CTRYAG	2 cut(s)	136, 561
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	4 cut(s)	122, 730, 933, 942
BstV2I	GAAGAC	1 cut(s)	267
BstX2I	RGATCY	3 cut(s)	316, 329, 391
BstYI	RGATCY	3 cut(s)	316, 329, 391
BsuRI	GGCC	2 cut(s)	417, 877
BtsCI	GGATG	4 cut(s)	172, 395, 449, 637
BtsIMutI	CAGTG	1 cut(s)	835
Cac8I	GCNNGC	5 cut(s)	622, 626, 813, 944, 982
CfoI	GCGC	4 cut(s)	674, 732, 743, 864
Cfr10I	RCCGGY	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	283, 707, 842, 996
CspAI	ACCGGT	1 cut(s)	905
CviAII	CATG	2 cut(s)	73, 664
CviQI	GTAC	4 cut(s)	283, 707, 842, 996
DdeI	CTNAG	7 cut(s)	12, 326, 579, 756, 827, 858, 935
DpnI	GATC	9 cut(s)	174, 293, 318, 331, 393, 446, 761, 783, 819
DpnII	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
DraIII	CACNNNGTG	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
EciI	GGCGGA	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	495, 637
Eco24I	GRGCYC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	2 cut(s)	495, 637
EcoT38I	GRGCYC	1 cut(s)	828
ErhI	CCWWGG	2 cut(s)	495, 637
FaeI	CATG	2 cut(s)	76, 667
FatI	CATG	2 cut(s)	72, 663
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	119, 136, 718, 744, 931, 947
FokI	GGATG	4 cut(s)	179, 382, 436, 644
FriOI	GRGCYC	1 cut(s)	828
Fsp4HI	GCNGC	6 cut(s)	119, 136, 718, 744, 931, 947
FspBI	CTAG	2 cut(s)	122, 927
GlaI	GCGC	4 cut(s)	673, 731, 742, 863
GluI	GCNGC	6 cut(s)	119, 136, 718, 744, 931, 947
GsuI	CTGGAG	1 cut(s)	746
HaeII	RGCGCY	2 cut(s)	733, 865
HaeIII	GGCC	2 cut(s)	417, 877
HapII	CCGG	4 cut(s)	874, 906, 913, 969
HhaI	GCGC	4 cut(s)	674, 732, 743, 864
Hin1II	CATG	2 cut(s)	76, 667
Hin6I	GCGC	4 cut(s)	672, 730, 741, 862
HinP1I	GCGC	4 cut(s)	672, 730, 741, 862
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	3 cut(s)	10, 27, 591
HpaII	CCGG	4 cut(s)	874, 906, 913, 969
HphI	GGTGA	2 cut(s)	13, 662
Hpy166II	GTNNAC	3 cut(s)	100, 551, 974
Hpy188I	TCNGA	2 cut(s)	15, 759
Hpy188III	TCNNGA	9 cut(s)	238, 268, 311, 749, 767, 800, 821, 848, 1007
Hpy8I	GTNNAC	3 cut(s)	100, 551, 974
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	138, 226, 306, 457, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	374, 669, 717, 738, 939
HpyF3I	CTNAG	7 cut(s)	12, 326, 579, 756, 827, 858, 935
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	76, 667
HspAI	GCGC	4 cut(s)	672, 730, 741, 862
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	4 cut(s)	365, 727, 823, 915
Lsp1109I	GCAGC	4 cut(s)	122, 730, 933, 942
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	122, 927
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	9 cut(s)	174, 293, 318, 331, 393, 446, 761, 783, 819
MboI	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
MboII	GAAGA	5 cut(s)	182, 272, 483, 827, 887
MfeI	CAATTG	1 cut(s)	202
MflI	RGATCY	3 cut(s)	316, 329, 391
MhlI	GDGCHC	2 cut(s)	828, 835
MluCI	AATT	3 cut(s)	202, 517, 567
MlyI	GAGTC	1 cut(s)	4
MseI	TTAA	3 cut(s)	65, 480, 596
MslI	CAYNNNNRTG	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	595
MspI	CCGG	4 cut(s)	874, 906, 913, 969
MspR9I	CCNGG	2 cut(s)	725, 874
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	5 cut(s)	374, 669, 717, 738, 939
NciI	CCSGG	1 cut(s)	874
NdeII	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
NlaIII	CATG	2 cut(s)	76, 667
NlaIV	GGNNCC	5 cut(s)	318, 367, 384, 753, 959
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	650
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	27, 591
PfoI	TCCNGGA	1 cut(s)	723
PinAI	ACCGGT	1 cut(s)	905
PkrI	GCNGC	6 cut(s)	120, 137, 719, 745, 932, 948
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	723
PspEI	GGTNACC	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	5 cut(s)	318, 367, 384, 753, 959
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	39
PstI	CTGCAG	2 cut(s)	140, 565
PsuI	RGATCY	3 cut(s)	316, 329, 391
PvuII	CAGCTG	1 cut(s)	946
RsaI	GTAC	4 cut(s)	284, 708, 843, 997
RsaNI	GTAC	4 cut(s)	283, 707, 842, 996
RseI	CAYNNNNRTG	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	828
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	65, 480, 596
SatI	GCNGC	6 cut(s)	119, 136, 718, 744, 931, 947
Sau3AI	GATC	9 cut(s)	172, 291, 316, 329, 391, 444, 759, 781, 817
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	725, 874
SduI	GDGCHC	2 cut(s)	828, 835
SfaNI	GCATC	1 cut(s)	345
SfcI	CTRYAG	2 cut(s)	136, 561
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	3 cut(s)	39, 425, 595
SmoI	CTYRAG	3 cut(s)	39, 425, 595
Sse9I	AATT	3 cut(s)	202, 517, 567
SsiI	CCGC	6 cut(s)	119, 715, 718, 739, 815, 884
SspMI	CTAG	2 cut(s)	122, 927
SstI	GAGCTC	1 cut(s)	828
StyD4I	CCNGG	2 cut(s)	723, 872
StyI	CCWWGG	2 cut(s)	495, 637
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	4 cut(s)	40, 57, 93, 476
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	3 cut(s)	202, 517, 567
TauI	GCSGC	2 cut(s)	121, 720
TfiI	GAWTC	2 cut(s)	27, 591
Tru1I	TTAA	3 cut(s)	65, 480, 596
Tru9I	TTAA	3 cut(s)	65, 480, 596
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	650
TseI	GCWGC	4 cut(s)	135, 743, 930, 946
Tsp45I	GTSAC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	183, 680
TspGWI	ACGGA	2 cut(s)	309, 820
TspRI	CASTG	1 cut(s)	835
Vha464I	CTTAAG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	2 cut(s)	122, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.