Rroxscaffold_1G00004320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019320
Physical Location & Seq
Reverse (-)
6023938 .. 6024710
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004320.1

Sequence Viewer

Length: 357 bp
ATGAATAGCGCAGAGATTCGTATCCTCAAAAAGCCCCACCAGATACGCCTCCGCCGCCTCCTGAAGCGCCGCCACGGCGCTGCTCTGGAATCGAAGATCAGTCTTGAAATCCTGAGCAATCTCCCTCACAAGCCTCTGGAACGGAAGCTTGCGGATCAGAAGCTCCGTGCTCTTCTGGTACTTCCTGATCTCTCTCAGCGCCACCGTTCCCGGCCTGAACCGGTGAGGCTTCTTCACTCCTCCGTCGCCGGAGCCGACTTCCGGGCCGCCTTGGTCGCCAGCTGTTTCCTAGGCGCCTTTCCTCCGGTGGACTTGCGAGCGGTCTGCTTGGTACGAGCCATTGTGAAGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

11.45

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019320)

Species Orthologous Gene IDs
pyrus_communis pycom05g28520 pycom11g02110
rosa_laevigata RLG00000036715
rosa_roxburghii Rroxscaffold_1G00004320 Rroxscaffold_1G00066650 Rroxscaffold_1G00067350 Rroxscaffold_6G00389990
rosa_samantha Rh5AG074500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 6 cut(s) 52, 55, 70, 152, 267, 320
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 180, 333
AfiI CCNNNNNNNGG 1 cut(s) 261
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 3 cut(s) 148, 163, 282
AluI AGCT 3 cut(s) 148, 163, 282
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 1 cut(s) 162
AoxI GGCC 2 cut(s) 212, 264
ApeKI GCWGC 1 cut(s) 80
AsiGI ACCGGT 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 289
AspLEI GCGC 5 cut(s) 11, 69, 80, 201, 296
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 2 cut(s) 211, 263
AsuHPI GGTGA 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 289
BanI GGYRCC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BciVI GTATCC 1 cut(s) 32
BcnI CCSGG 2 cut(s) 211, 263
BfaI CTAG 1 cut(s) 290
BfoI RGCGCY 4 cut(s) 70, 81, 202, 297
BfuI GTATCC 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 75
BisI GCNGC 4 cut(s) 55, 70, 81, 267
BlnI CCTAGG 1 cut(s) 289
BlsI GCNGC 4 cut(s) 56, 71, 82, 268
Bme1390I CCNGG 2 cut(s) 211, 263
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 2 cut(s) 253, 295
BmrFI CCNGG 2 cut(s) 211, 263
Bpu10I CCTNAGC 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 211, 263
BsaBI GATNNNNATC 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 73, 270, 289
BsaWI WCCGGW 2 cut(s) 220, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse118I RCCGGY 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 73, 270, 289
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 104, 209
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 2 cut(s) 214, 266
BshNI GGYRCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 5 cut(s) 211, 221, 249, 262, 305
BslI CCNNNNNNNGG 1 cut(s) 261
BsnI GGCC 2 cut(s) 214, 266
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 96, 154, 187
BspACI CCGC 6 cut(s) 52, 55, 70, 152, 267, 320
BspANI GGCC 2 cut(s) 214, 266
BspCNI CTCAG 2 cut(s) 105, 208
BspLI GGNNCC 2 cut(s) 253, 295
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 73, 270, 289
BssMI GATC 3 cut(s) 96, 154, 187
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 270, 289
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 150, 280, 318
BstDEI CTNAG 2 cut(s) 113, 195
BstDSI CCRYGG 1 cut(s) 73
BstH2I RGCGCY 4 cut(s) 70, 81, 202, 297
BstHHI GCGC 5 cut(s) 11, 69, 80, 201, 296
BstKTI GATC 3 cut(s) 99, 157, 190
BstMBI GATC 3 cut(s) 96, 154, 187
BstMWI GCNNNNNNNGC 3 cut(s) 54, 75, 275
BstSCI CCNGG 2 cut(s) 209, 261
BstV1I GCAGC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 2 cut(s) 214, 266
BtgI CCRYGG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 150, 280, 318
CfoI GCGC 5 cut(s) 11, 69, 80, 201, 296
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 179, 332
CspAI ACCGGT 1 cut(s) 220
CviQI GTAC 2 cut(s) 179, 332
DdeI CTNAG 2 cut(s) 113, 195
DinI GGCGCC 1 cut(s) 295
DpnI GATC 3 cut(s) 98, 156, 189
DpnII GATC 3 cut(s) 96, 154, 187
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 270, 289
Eco57I CTGAAG 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 270, 289
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 270, 289
Fnu4HI GCNGC 4 cut(s) 55, 70, 81, 267
Fsp4HI GCNGC 4 cut(s) 55, 70, 81, 267
FspBI CTAG 1 cut(s) 290
GlaI GCGC 5 cut(s) 10, 68, 79, 200, 295
GluI GCNGC 4 cut(s) 55, 70, 81, 267
HaeII RGCGCY 4 cut(s) 70, 81, 202, 297
HaeIII GGCC 2 cut(s) 214, 266
HapII CCGG 5 cut(s) 211, 221, 249, 262, 305
HhaI GCGC 5 cut(s) 11, 69, 80, 201, 296
Hin1I GRCGYC 1 cut(s) 294
Hin6I GCGC 5 cut(s) 9, 67, 78, 199, 294
HinP1I GCGC 5 cut(s) 9, 67, 78, 199, 294
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 2 cut(s) 16, 89
HpaII CCGG 5 cut(s) 211, 221, 249, 262, 305
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 6 cut(s) 61, 86, 104, 112, 137, 185
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 75, 275
HpyF3I CTNAG 2 cut(s) 113, 195
Hsp92I GRCGYC 1 cut(s) 294
HspAI GCGC 5 cut(s) 9, 67, 78, 199, 294
KasI GGCGCC 1 cut(s) 293
Kzo9I GATC 3 cut(s) 96, 154, 187
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 168, 251
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 290
MalI GATC 3 cut(s) 98, 156, 189
MbiI CCGCTC 1 cut(s) 320
MboI GATC 3 cut(s) 96, 154, 187
MboII GAAGA 3 cut(s) 106, 164, 224
MhlI GDGCHC 1 cut(s) 172
Mly113I GGCGCC 1 cut(s) 294
MnlI CCTC 8 cut(s) 35, 59, 68, 135, 144, 219, 250, 312
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 5 cut(s) 211, 221, 249, 262, 305
MspR9I CCNGG 2 cut(s) 211, 263
MwoI GCNNNNNNNGC 3 cut(s) 54, 75, 275
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 2 cut(s) 211, 263
NdeII GATC 3 cut(s) 96, 154, 187
NlaIV GGNNCC 2 cut(s) 253, 295
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 16, 89
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 4 cut(s) 56, 71, 82, 268
PluTI GGCGCC 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 253, 295
PspPI GGNCC 1 cut(s) 264
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 2 cut(s) 180, 333
RsaNI GTAC 2 cut(s) 179, 332
SapI GCTCTTC 1 cut(s) 177
SatI GCNGC 4 cut(s) 55, 70, 81, 267
Sau3AI GATC 3 cut(s) 96, 154, 187
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 211, 263
SduI GDGCHC 1 cut(s) 172
SetI ASST 3 cut(s) 150, 165, 284
SfoI GGCGCC 1 cut(s) 295
SsiI CCGC 6 cut(s) 52, 55, 70, 152, 267, 320
SspDI GGCGCC 1 cut(s) 293
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 209, 261
StyI CCWWGG 2 cut(s) 270, 289
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 92
TauI GCSGC 3 cut(s) 57, 72, 269
TfiI GAWTC 2 cut(s) 16, 89
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 155, 157, 232
XmaJI CCTAGG 1 cut(s) 289
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.