RLG00000036715

Core histone H2A/H2B/H3/H4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019320
Physical Location & Seq
Forward (+)
83711917 .. 83712560
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036715

Sequence Viewer

Length: 537 bp
ATGAATAGCACACAGATTCGTATCCTCAAAAAGCCCTACCAGGTACGCCTCCGCCGCCTCCTGAAGCGCCTCCACAGCGCTGCTCTGGAATCAGAGATCAGTCTTGAAATCGTGAGCAATCTCCCTGACAAGCCTCTAGAACGGAAGTTTTTGGATCAGAAGCTCTGTGCTCTTCTGGTACTTCCTGATCTCTCTCAGCGCCACCGTTCCTGGCCTGGACCGGTGAGGCTTCTTCACTCCTCCGGTCGCAGGAGCCGACTTCCGGGCCGCCTTGGTCTCCAGCTGTTTCCTAGGCGCCTTTCCTCCGGTGGACTTGCGAGCGGTCTGCTTGGTACGAGCCATTGTGAAGAAGAAGAGGAATTGGGGTTAGGGTTTTGGGAATTTAGGCTTTGGGGATTGGAATTTCAATTTTGGATTTGGGGAAGAAATGTCTTGACGGTTCAGATTTGTTTTTATTCTGAACTATATGGATTGCGATCCGCGTCCTCTGGAACTGGCGAATGGGATTGCTTTGTGTTAAAGTGCGGGGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05202 ko05322 map05034 map05202 map05322
Pfam Domains
Protein Families
Histone

Protein Analysis

179

Amino Acids

20.48

Weight (kDa)

9.46

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019320)

Species Orthologous Gene IDs
pyrus_communis pycom05g28520 pycom11g02110
rosa_laevigata RLG00000036715
rosa_roxburghii Rroxscaffold_1G00004320 Rroxscaffold_1G00066650 Rroxscaffold_1G00067350 Rroxscaffold_6G00389990
rosa_samantha Rh5AG074500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 294
AccBSI CCGCTC 1 cut(s) 321
AccII CGCG 1 cut(s) 482
AciI CCGC 6 cut(s) 52, 55, 268, 321, 480, 525
AclWI GGATC 2 cut(s) 162, 471
AcsI RAATTY 2 cut(s) 380, 401
AcuI CTGAAG 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 295
AfaI GTAC 3 cut(s) 45, 180, 334
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 249, 262
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 2 cut(s) 107, 407
AjnI CCWGG 3 cut(s) 39, 209, 214
AluBI AGCT 2 cut(s) 163, 283
AluI AGCT 2 cut(s) 163, 283
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 162, 471
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 2 cut(s) 212, 265
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 380, 401
AsiGI ACCGGT 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 290
AspLEI GCGC 4 cut(s) 69, 80, 201, 297
AspS9I GGNCC 2 cut(s) 218, 265
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 3 cut(s) 41, 211, 216
BciVI GTATCC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 2 cut(s) 137, 291
BfoI RGCGCY 4 cut(s) 70, 81, 202, 298
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 3 cut(s) 55, 81, 268
BlnI CCTAGG 1 cut(s) 290
BlsI GCNGC 3 cut(s) 56, 82, 269
Bme1390I CCNGG 4 cut(s) 41, 211, 216, 264
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 218, 265
BmiI GGNNCC 2 cut(s) 254, 296
BmrFI CCNGG 4 cut(s) 41, 211, 216, 264
BpmI CTGGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 264
BsaBI GATNNNNATC 2 cut(s) 20, 475
BsaHI GRCGYC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 271, 290
BsaWI WCCGGW 3 cut(s) 220, 242, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 262
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 499
Bse8I GATNNNNATC 2 cut(s) 20, 475
BseBI CCWGG 3 cut(s) 41, 211, 216
BseDI CCNNGG 2 cut(s) 271, 290
BseJI GATNNNNATC 2 cut(s) 20, 475
BseLI CCNNNNNNNGG 2 cut(s) 249, 262
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 214, 267
BshNI GGYRCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 220
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 4 cut(s) 221, 243, 263, 306
BslI CCNNNNNNNGG 2 cut(s) 249, 262
BsmAI GTCTC 1 cut(s) 281
BsnI GGCC 2 cut(s) 214, 267
Bso31I GGTCTC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 4 cut(s) 96, 154, 187, 476
BspACI CCGC 6 cut(s) 52, 55, 268, 321, 480, 525
BspANI GGCC 2 cut(s) 214, 267
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 482
BspLI GGNNCC 2 cut(s) 254, 296
BspPI GGATC 2 cut(s) 162, 471
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 321
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 271, 290
BssMI GATC 4 cut(s) 96, 154, 187, 476
BssNI GRCGYC 1 cut(s) 295
BssT1I CCWWGG 2 cut(s) 271, 290
Bst2UI CCWGG 3 cut(s) 41, 211, 216
Bst4CI ACNGT 2 cut(s) 206, 439
Bst6I CTCTTC 2 cut(s) 177, 348
BstACI GRCGYC 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 482
BstH2I RGCGCY 4 cut(s) 70, 81, 202, 298
BstHHI GCGC 4 cut(s) 69, 80, 201, 297
BstKTI GATC 4 cut(s) 99, 157, 190, 479
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 4 cut(s) 96, 154, 187, 476
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 54, 75
BstNI CCWGG 3 cut(s) 41, 211, 216
BstSCI CCNGG 4 cut(s) 39, 209, 214, 262
BstUI CGCG 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 67
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 2 cut(s) 214, 267
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 4 cut(s) 69, 80, 201, 297
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 2 cut(s) 218, 265
CseI GACGC 1 cut(s) 471
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 3 cut(s) 44, 179, 333
CspAI ACCGGT 1 cut(s) 220
CviQI GTAC 3 cut(s) 44, 179, 333
DdeI CTNAG 1 cut(s) 195
DinI GGCGCC 1 cut(s) 296
DpnI GATC 4 cut(s) 98, 156, 189, 478
DpnII GATC 4 cut(s) 96, 154, 187, 476
Eam1104I CTCTTC 2 cut(s) 177, 348
EarI CTCTTC 2 cut(s) 177, 348
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 2 cut(s) 271, 290
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 218
Eco47III AGCGCT 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 83
EcoRII CCWGG 3 cut(s) 39, 209, 214
EcoT14I CCWWGG 2 cut(s) 271, 290
EgeI GGCGCC 1 cut(s) 296
EheI GGCGCC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 271, 290
FaiI YATR 2 cut(s) 466, 468
FauI CCCGC 1 cut(s) 518
Fnu4HI GCNGC 3 cut(s) 55, 81, 268
Fsp4HI GCNGC 3 cut(s) 55, 81, 268
FspBI CTAG 2 cut(s) 137, 291
GlaI GCGC 4 cut(s) 68, 79, 200, 296
GluI GCNGC 3 cut(s) 55, 81, 268
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 4 cut(s) 70, 81, 202, 298
HaeIII GGCC 2 cut(s) 214, 267
HapII CCGG 4 cut(s) 221, 243, 263, 306
HgaI GACGC 1 cut(s) 471
HhaI GCGC 4 cut(s) 69, 80, 201, 297
Hin1I GRCGYC 1 cut(s) 295
Hin6I GCGC 4 cut(s) 67, 78, 199, 295
HinP1I GCGC 4 cut(s) 67, 78, 199, 295
HinfI GANTC 2 cut(s) 16, 89
HpaII CCGG 4 cut(s) 221, 243, 263, 306
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 94, 159, 444, 460
Hpy188III TCNNGA 8 cut(s) 61, 86, 104, 112, 137, 185, 433, 489
Hpy8I GTNNAC 1 cut(s) 311
HpyCH4III ACNGT 2 cut(s) 206, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 75
HpyF3I CTNAG 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 295
HspAI GCGC 4 cut(s) 67, 78, 199, 295
KasI GGCGCC 1 cut(s) 294
Kzo9I GATC 4 cut(s) 96, 154, 187, 476
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 252
Lsp1109I GCAGC 1 cut(s) 67
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 2 cut(s) 137, 291
MalI GATC 4 cut(s) 98, 156, 189, 478
MbiI CCGCTC 1 cut(s) 321
MboI GATC 4 cut(s) 96, 154, 187, 476
MboII GAAGA 6 cut(s) 164, 224, 359, 362, 365, 435
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 4 cut(s) 359, 380, 401, 407
Mly113I GGCGCC 1 cut(s) 295
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 4 cut(s) 221, 243, 263, 306
MspR9I CCNGG 4 cut(s) 41, 211, 216, 264
MvaI CCWGG 3 cut(s) 41, 211, 216
MvnI CGCG 1 cut(s) 482
MwoI GCNNNNNNNGC 2 cut(s) 54, 75
NarI GGCGCC 1 cut(s) 295
NciI CCSGG 1 cut(s) 264
NdeII GATC 4 cut(s) 96, 154, 187, 476
NlaIV GGNNCC 2 cut(s) 254, 296
PciSI GCTCTTC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 2 cut(s) 16, 89
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 3 cut(s) 56, 82, 269
PluTI GGCGCC 1 cut(s) 298
Psp6I CCWGG 3 cut(s) 39, 209, 214
PspGI CCWGG 3 cut(s) 39, 209, 214
PspN4I GGNNCC 2 cut(s) 254, 296
PspPI GGNCC 2 cut(s) 218, 265
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 3 cut(s) 45, 180, 334
RsaNI GTAC 3 cut(s) 44, 179, 333
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 3 cut(s) 55, 81, 268
Sau3AI GATC 4 cut(s) 96, 154, 187, 476
Sau96I GGNCC 2 cut(s) 218, 265
ScrFI CCNGG 4 cut(s) 41, 211, 216, 264
SduI GDGCHC 1 cut(s) 172
SetI ASST 3 cut(s) 45, 165, 285
SexAI ACCWGGT 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 296
SinI GGWCC 1 cut(s) 218
Sse9I AATT 4 cut(s) 359, 380, 401, 407
SsiI CCGC 6 cut(s) 52, 55, 268, 321, 480, 525
SspDI GGCGCC 1 cut(s) 294
SspMI CTAG 2 cut(s) 137, 291
StyD4I CCNGG 4 cut(s) 39, 209, 214, 262
StyI CCWWGG 2 cut(s) 271, 290
TaaI ACNGT 2 cut(s) 206, 439
TasI AATT 4 cut(s) 359, 380, 401, 407
TauI GCSGC 2 cut(s) 57, 270
TfiI GAWTC 2 cut(s) 16, 89
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 380, 401
XbaI TCTAGA 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 2 cut(s) 137, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.