pycom11g06720

Thylakoid soluble phosphoprotein TSP9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015352
Physical Location & Seq
Forward (+)
5168881 .. 5169372
492 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGAGGATAAGACACTTGTGGAGAGCTTGTGCTACAAACACAATCCATTCAAATCTAAGTCACCATACAAAATCCATCCAGCGGCTCACATTCACTGAAACAAAAAGTGAGGATACATTATCCTACTCACTTTGCTTCCCTCCTCTTATTCACTCCCAACCATTCCAAACTTTCATACCATTTTCCTCTAGAGACTCAAACAAGCTTAACATGGCTTCCTTGACAATGGTCTTTCCTCCGGTGGTGACTGGCAGAGCAACCGGCCAAGTGTACGCGGCAACGGCGGCCAAGGGAGGAAGGAAAGAAGAGAAGGGTCCGTTTGATTGGATTCTCGGAGGGCTAGCGAAGGAGGACCAGCTGCTTGAGGTTGATCCAATCCTGAAGAAGGTTGAGGACAAGAATGGTACCGTCAGCGGCAGCAAGGGCACTGTGGTTGTGCCGCCGAAGAAGAAGCAGGGTGGCTTTGGAGGCCTTTTTGCCAAGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSP9

Protein Analysis

164

Amino Acids

17.92

Weight (kDa)

9.73

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSP9 PF11493 94 - 161 5.8e-22 Thylakoid soluble phosphoprotein TSP9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47070
fragaria_vesca FvH4_3g38260 FvH4_3g38260
malus_domestica MD03G1073700.v1.1 MD11G1079700.v1.1
prunus_persica Prupe.6G060300_v2.0.a1
pyrus_communis pycom03g05960 pycom11g06720
rosa_chinensis RchiOBHm_Chr5g0068741
rosa_multiflora Rmu_sc0000376.1_g000029
rosa_rugosa Rorug05G0392800
rosa_samantha Rh5AG450400 Rh5BG468800 Rh5CG491000 Rh5DG482300
rosa_wichuraiana Rw5G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AccII CGCG 1 cut(s) 275
AciI CCGC 5 cut(s) 82, 275, 284, 414, 440
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 2 cut(s) 262, 285
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 272, 406
AfiI CCNNNNNNNGG 2 cut(s) 81, 385
AgsI TTSAA 1 cut(s) 51
AluBI AGCT 3 cut(s) 26, 205, 358
AluI AGCT 3 cut(s) 26, 205, 358
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 365
AoxI GGCC 3 cut(s) 262, 285, 469
ApeKI GCWGC 2 cut(s) 358, 417
Asp718I GGTACC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 314, 352
AsuHPI GGTGA 2 cut(s) 53, 256
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 2 cut(s) 314, 352
BaeGI GKGCMC 1 cut(s) 428
BanI GGYRCC 1 cut(s) 404
BbvI GCAGC 2 cut(s) 345, 429
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 297
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 189, 341
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 7 cut(s) 83, 276, 285, 359, 415, 418, 440
BlsI GCNGC 7 cut(s) 84, 277, 286, 360, 416, 419, 441
Bme18I GGWCC 2 cut(s) 314, 352
BmgT120I GGNCC 2 cut(s) 314, 352
BmiI GGNNCC 2 cut(s) 315, 406
BmtI GCTAGC 1 cut(s) 344
BoxI GACNNNNGTC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 385
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 81, 385
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 2 cut(s) 345, 429
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 3 cut(s) 264, 287, 471
BshNI GGYRCC 1 cut(s) 404
BsiSI CCGG 2 cut(s) 239, 261
BslI CCNNNNNNNGG 2 cut(s) 81, 385
BsmAI GTCTC 1 cut(s) 186
BsnI GGCC 3 cut(s) 264, 287, 471
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 5 cut(s) 82, 275, 284, 414, 440
BspANI GGCC 3 cut(s) 264, 287, 471
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 2 cut(s) 315, 406
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 409, 430
Bst6I CTCTTC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 4 cut(s) 281, 284, 423, 468
BstPAI GACNNNNGTC 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 428
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 345, 429
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 264, 287, 471
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 93, 426
Cac8I GCNNGC 1 cut(s) 342
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 314, 352
Csp6I GTAC 2 cut(s) 271, 405
CviAII CATG 1 cut(s) 211
CviQI GTAC 2 cut(s) 271, 405
DdeI CTNAG 1 cut(s) 56
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 2 cut(s) 262, 285
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 288
Eco147I AGGCCT 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 314, 352
Eco57I CTGAAG 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 214
FaiI YATR 3 cut(s) 66, 176, 212
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 7 cut(s) 83, 276, 285, 359, 415, 418, 440
FokI GGATG 1 cut(s) 62
Fsp4HI GCNGC 7 cut(s) 83, 276, 285, 359, 415, 418, 440
FspBI CTAG 2 cut(s) 189, 341
GluI GCNGC 7 cut(s) 83, 276, 285, 359, 415, 418, 440
HaeIII GGCC 3 cut(s) 264, 287, 471
HapII CCGG 2 cut(s) 239, 261
Hin1II CATG 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 194, 328
HpaII CCGG 2 cut(s) 239, 261
HphI GGTGA 2 cut(s) 53, 256
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 1 cut(s) 335
Hpy188III TCNNGA 2 cut(s) 189, 379
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 5 cut(s) 291, 304, 340, 379, 478
HpyCH4III ACNGT 2 cut(s) 409, 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 284, 423, 468
HpyF3I CTNAG 1 cut(s) 56
Hsp92II CATG 1 cut(s) 214
KpnI GGTACC 1 cut(s) 408
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 7 cut(s) 92, 234, 252, 274, 368, 392, 440
Lsp1109I GCAGC 2 cut(s) 345, 429
MaeI CTAG 2 cut(s) 189, 341
MaeIII GTNAC 2 cut(s) 59, 244
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 4 cut(s) 317, 394, 457, 460
MhlI GDGCHC 1 cut(s) 428
MlyI GAGTC 1 cut(s) 188
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 3 cut(s) 82, 358, 414
MspI CCGG 2 cut(s) 239, 261
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 281, 284, 423, 468
NdeII GATC 1 cut(s) 370
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 2 cut(s) 315, 406
NmuCI GTSAC 2 cut(s) 59, 244
PceI AGGCCT 1 cut(s) 471
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 7 cut(s) 84, 277, 286, 360, 416, 419, 441
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 315, 406
PspPI GGNCC 2 cut(s) 314, 352
PvuII CAGCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 272, 406
RsaNI GTAC 2 cut(s) 271, 405
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 7 cut(s) 83, 276, 285, 359, 415, 418, 440
Sau3AI GATC 1 cut(s) 370
Sau96I GGNCC 2 cut(s) 314, 352
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 428
SetI ASST 5 cut(s) 28, 207, 360, 369, 390
SinI GGWCC 2 cut(s) 314, 352
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 5 cut(s) 82, 275, 284, 414, 440
SspMI CTAG 2 cut(s) 189, 341
StuI AGGCCT 1 cut(s) 471
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 409, 430
TauI GCSGC 5 cut(s) 85, 278, 287, 417, 442
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 100, 433
TseFI GTSAC 2 cut(s) 59, 244
TseI GCWGC 2 cut(s) 358, 417
Tsp45I GTSAC 2 cut(s) 59, 244
TspDTI ATGAA 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 100, 433
VpaK11BI GGWCC 2 cut(s) 314, 352
XagI CCTNNNNNAGG 1 cut(s) 383
XbaI TCTAGA 1 cut(s) 188
XspI CTAG 2 cut(s) 189, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.