pycom11g07410

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0018893
Physical Location & Seq
Forward (+)
5618097 .. 5619597
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1371 bp
ATGATTTTTCTTTTTCAGGAAACAACGCCAAGGGTTGAGCATCAATCTGCAGGAATATTTGAAAAACCAATATTTCCATCAAAGTGCATTTCATGGTTTCCAAGTTTAGAAGAGGTAGAGTTGTCTGAAATGGAGTTTGAAGGCGTGCTATTTTATAAGACGATCGATCTGAAAATCCATATAGTTATGGATGGGCAGACAGCTCCAACATGTCCCCAGTTACGTAAGTTGGAGATATACAATTGTTCGTTTACACACTTGTGGAAAAACATTCCGTCTGGATTCCAGGGCTTCCAAAATTTGAGATATTTGGAAGTGTGTGGATGTTCTGGTCTAGAATATGTGTTCTCGCATTTAATTGCCTCGGAACTTTTGAATCTTGAAGACGTAAAAATAGGTGGATGTCGGGACATGGAAACTATAGTCAGAATCCCAGAGGAAAATGAAGAAGAGGCGATAAAAGACATGATTTTGTTTCCGAAACCGAACACATTTGAACTACGACGCCTGCCTCGTCTCACAAGTCTTTGTCCTGCGGGATCTACATTTCAATGGTCATCCACAAAAAATATGCACGTGGAAGGAGGTGAAAAATTGAAGACATTGGGTAAAGATTCAACAAGTCATGATTTCAGCACTTCTCCAACACGTTCATCAAATTGGTGCCCTGATGGATGTGGATGCACACCATATTCAAGACCAAACGCCCAACGCTCCATTGAAATATTGCCACGTCCAATTAATCTGGAGGTTACACCAACTAATCTGGAGGACTCAAATGATGATGATAATCTCAAAAAATTTACTGTAATGTTCTGCGATTCAATGGAAGTGATTTTCCAACTAAAGGGACCGAAGCTTGAAGAAAGTAGTCTCTCCATTGAAGCATTCAGTAAATTGAGTTCCTTGCGGTTAGATACGTTGCCAAGTTTAACGCGTGTCTGGGAGACGGGTAGTTCACAACCGATGTTGACAGGAAGCAGCTTCGGAAACTTGAAATCGCTGCAGGTCTATAAGTGCAAACAGTTGAAATACTTGTTTTCTTCGTCCATAGTCAAACTTCTTGTGAGTGTAGAGGACATAAAAGTTGAGAACTGTGAGAAGATGGAAGAAATCGTTGCCGCAGAAGAGGAAACAGCTGAAATAATTACATTACCTAAGGTGAAGTCCATCAAGCTTGAAAGTCTGCCAAAACTCAAGTATTTTTGTGGTGAAGCTTATACTTTGAAGTTGCCGTCTTTGGAGTTATTGAAGGTTATTAATGTGCAAGACTTAAGGCCATTTGATTCTAAGCTTGTTGACACGCATAATCCCCGATTGCAAGTAAAACCCGCATTTCGACAGGAATGGACAAGGTATGCTTTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

457

Amino Acids

51.91

Weight (kDa)

5.39

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 22 - 135 1.3e-16 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 263 - 367 6e-21 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 326 - 426 1.2e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 997
AccB1I GGYRCC 1 cut(s) 663
AccII CGCG 1 cut(s) 937
AciI CCGC 4 cut(s) 536, 910, 1122, 1332
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 2 cut(s) 298, 800
AcvI CACGTG 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 847
AflII CTTAAG 1 cut(s) 1273
AflIII ACRYGT 3 cut(s) 209, 647, 935
AjiI CACGTC 1 cut(s) 734
AjnI CCWGG 1 cut(s) 285
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 7 cut(s) 203, 859, 984, 1139, 1177, 1217, 1294
AluI AGCT 7 cut(s) 203, 859, 984, 1139, 1177, 1217, 1294
Alw26I GTCTC 3 cut(s) 521, 878, 941
AlwI GGATC 1 cut(s) 547
AoxI GGCC 1 cut(s) 1277
ApeKI GCWGC 2 cut(s) 981, 1003
ApoI RAATTY 2 cut(s) 298, 800
AseI ATTAAT 2 cut(s) 741, 1260
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 3 cut(s) 599, 1174, 1223
AvaII GGWCC 1 cut(s) 851
AxyI CCTNAGG 1 cut(s) 1158
BaeGI GKGCMC 1 cut(s) 668
BanI GGYRCC 1 cut(s) 663
BbrPI CACGTG 1 cut(s) 577
BbsI GAAGAC 2 cut(s) 390, 605
BbvI GCAGC 2 cut(s) 990, 993
BccI CCATC 5 cut(s) 85, 185, 665, 1099, 1178
BceAI ACGGC 1 cut(s) 1219
BciT130I CCWGG 1 cut(s) 287
BcoDI GTCTC 3 cut(s) 521, 878, 941
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 3 cut(s) 48, 420, 1004
BfrI CTTAAG 1 cut(s) 1273
BfuAI ACCTGC 1 cut(s) 997
BisI GCNGC 3 cut(s) 982, 1004, 1122
BlsI GCNGC 3 cut(s) 983, 1005, 1123
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 851
BmgBI CACGTC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 851
BmiI GGNNCC 2 cut(s) 665, 852
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 49, 671
BmuI ACTGGG 1 cut(s) 211
BpiI GAAGAC 2 cut(s) 390, 605
BpmI CTGGAG 2 cut(s) 767, 788
BpuEI CTTGAG 1 cut(s) 1181
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 2 cut(s) 224, 577
BsaBI GATNNNNATC 1 cut(s) 789
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 3 cut(s) 29, 286, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 847
Bse1I ACTGG 1 cut(s) 217
Bse21I CCTNAGG 1 cut(s) 1158
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 29, 286, 363
BseGI GGATG 6 cut(s) 196, 329, 407, 557, 680, 686
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 1 cut(s) 847
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 668
BseXI GCAGC 2 cut(s) 990, 993
Bsh1236I CGCG 1 cut(s) 937
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 1279
BshNI GGYRCC 1 cut(s) 663
BshVI ATCGAT 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BslFI GGGAC 3 cut(s) 198, 422, 864
BslI CCNNNNNNNGG 1 cut(s) 847
BsmAI GTCTC 3 cut(s) 521, 878, 941
BsmBI CGTCTC 2 cut(s) 521, 941
BsmFI GGGAC 3 cut(s) 198, 422, 864
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 1 cut(s) 1279
Bsp1286I GDGCHC 1 cut(s) 668
Bsp143I GATC 3 cut(s) 162, 166, 539
BspACI CCGC 4 cut(s) 536, 910, 1122, 1332
BspANI GGCC 1 cut(s) 1279
BspDI ATCGAT 1 cut(s) 165
BspFNI CGCG 1 cut(s) 937
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 665, 852
BspMAI CTGCAG 2 cut(s) 52, 1008
BspMI ACCTGC 1 cut(s) 997
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 663
BspTI CTTAAG 1 cut(s) 1273
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 29, 286, 363
BssMI GATC 3 cut(s) 162, 166, 539
BssNI GRCGYC 1 cut(s) 505
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 3 cut(s) 808, 1026, 1097
Bst6I CTCTTC 3 cut(s) 105, 444, 1122
BstACI GRCGYC 1 cut(s) 505
BstAFI CTTAAG 1 cut(s) 1273
BstBAI YACGTR 2 cut(s) 224, 577
BstC8I GCNNGC 2 cut(s) 146, 509
BstDEI CTNAG 2 cut(s) 1158, 1290
BstF5I GGATG 6 cut(s) 196, 329, 407, 557, 680, 686
BstFNI CGCG 1 cut(s) 937
BstKTI GATC 3 cut(s) 165, 169, 542
BstMAI GTCTC 3 cut(s) 521, 878, 941
BstMBI GATC 3 cut(s) 162, 166, 539
BstMCI CGRYCG 1 cut(s) 165
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 3 cut(s) 48, 420, 1004
BstSLI GKGCMC 1 cut(s) 668
BstSNI TACGTA 1 cut(s) 224
BstUI CGCG 1 cut(s) 937
BstV1I GCAGC 2 cut(s) 990, 993
BstV2I GAAGAC 2 cut(s) 390, 605
BstX2I RGATCY 1 cut(s) 539
BstYI RGATCY 1 cut(s) 539
Bsu15I ATCGAT 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 1158
BsuRI GGCC 1 cut(s) 1279
BsuTUI ATCGAT 1 cut(s) 165
BtrI CACGTC 1 cut(s) 734
BtsCI GGATG 6 cut(s) 196, 329, 407, 557, 680, 686
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 146, 509
CciI TCATGA 1 cut(s) 625
Cfr13I GGNCC 1 cut(s) 851
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 513
CviAII CATG 5 cut(s) 93, 210, 412, 466, 626
CviJI RGCY 9 cut(s) 203, 291, 859, 984, 1139, 1177, 1217, 1279, 1294
CviKI_1 RGCY 9 cut(s) 203, 291, 859, 984, 1139, 1177, 1217, 1279, 1294
DdeI CTNAG 2 cut(s) 1158, 1290
DpnI GATC 3 cut(s) 164, 168, 541
DpnII GATC 3 cut(s) 162, 166, 539
Eam1104I CTCTTC 3 cut(s) 105, 444, 1122
EarI CTCTTC 3 cut(s) 105, 444, 1122
Eco105I TACGTA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 851
Eco72I CACGTG 1 cut(s) 577
Eco81I CCTNAGG 1 cut(s) 1158
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
Esp3I CGTCTC 2 cut(s) 521, 941
FaeI CATG 5 cut(s) 96, 213, 415, 469, 629
FalI AAGNNNNNCTT 1 cut(s) 1345
FaqI GGGAC 3 cut(s) 198, 422, 864
FatI CATG 5 cut(s) 92, 209, 411, 465, 625
FauI CCCGC 2 cut(s) 529, 1339
Fnu4HI GCNGC 3 cut(s) 982, 1004, 1122
FokI GGATG 6 cut(s) 203, 336, 414, 544, 687, 693
Fsp4HI GCNGC 3 cut(s) 982, 1004, 1122
FspBI CTAG 1 cut(s) 335
GluI GCNGC 3 cut(s) 982, 1004, 1122
GsuI CTGGAG 2 cut(s) 767, 788
HaeIII GGCC 1 cut(s) 1279
HgaI GACGC 1 cut(s) 513
Hin1I GRCGYC 1 cut(s) 505
Hin1II CATG 5 cut(s) 96, 213, 415, 469, 629
HincII GTYRAC 2 cut(s) 972, 1300
HindII GTYRAC 2 cut(s) 972, 1300
HindIII AAGCTT 4 cut(s) 857, 1175, 1215, 1292
HinfI GANTC 7 cut(s) 282, 376, 429, 614, 773, 821, 1286
HphI GGTGA 3 cut(s) 599, 1174, 1223
Hpy166II GTNNAC 4 cut(s) 252, 959, 972, 1300
Hpy188I TCNGA 6 cut(s) 127, 171, 367, 428, 480, 989
Hpy188III TCNNGA 9 cut(s) 17, 279, 335, 380, 407, 626, 696, 746, 767
Hpy8I GTNNAC 4 cut(s) 252, 959, 972, 1300
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 3 cut(s) 134, 575, 1246
HpyCH4III ACNGT 3 cut(s) 808, 1026, 1097
HpyCH4IV ACGT 6 cut(s) 223, 387, 576, 649, 733, 920
HpyCH4V TGCA 8 cut(s) 50, 87, 574, 684, 1006, 1020, 1267, 1321
HpyF3I CTNAG 2 cut(s) 1158, 1290
HpySE526I ACGT 6 cut(s) 223, 387, 576, 649, 733, 920
Hsp92I GRCGYC 1 cut(s) 505
Hsp92II CATG 5 cut(s) 96, 213, 415, 469, 629
Kzo9I GATC 3 cut(s) 162, 166, 539
LmnI GCTCC 2 cut(s) 208, 719
Lsp1109I GCAGC 2 cut(s) 990, 993
LweI GCATC 2 cut(s) 49, 671
MaeI CTAG 1 cut(s) 335
MaeII ACGT 6 cut(s) 223, 387, 576, 649, 733, 920
MaeIII GTNAC 2 cut(s) 219, 751
MalI GATC 3 cut(s) 164, 168, 541
MboI GATC 3 cut(s) 162, 166, 539
MfeI CAATTG 1 cut(s) 241
MflI RGATCY 1 cut(s) 539
MhlI GDGCHC 1 cut(s) 668
MluCI AATT 9 cut(s) 241, 298, 357, 593, 658, 738, 800, 896, 1146
MluI ACGCGT 1 cut(s) 935
MlyI GAGTC 1 cut(s) 767
MmeI TCCRAC 4 cut(s) 210, 230, 668, 865
MseI TTAA 6 cut(s) 356, 741, 932, 1260, 1274, 1369
MslI CAYNNNNRTG 3 cut(s) 82, 259, 550
MspA1I CMGCKG 1 cut(s) 1139
MspCI CTTAAG 1 cut(s) 1273
MspR9I CCNGG 1 cut(s) 287
MunI CAATTG 1 cut(s) 241
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 1 cut(s) 287
MvnI CGCG 1 cut(s) 937
NdeII GATC 3 cut(s) 162, 166, 539
NlaIII CATG 5 cut(s) 96, 213, 415, 469, 629
NlaIV GGNNCC 2 cut(s) 665, 852
NspI RCATGY 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 259
PagI TCATGA 1 cut(s) 625
PciI ACATGT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PctI GAATGC 1 cut(s) 887
PfeI GAWTC 6 cut(s) 282, 376, 429, 614, 821, 1286
PkrI GCNGC 3 cut(s) 983, 1005, 1123
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 1 cut(s) 767
PmaCI CACGTG 1 cut(s) 577
PmlI CACGTG 1 cut(s) 577
PpsI GAGTC 1 cut(s) 767
Ppu21I YACGTR 2 cut(s) 224, 577
PscI ACATGT 1 cut(s) 209
PshBI ATTAAT 2 cut(s) 741, 1260
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 285
PspCI CACGTG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 665, 852
PspPI GGNCC 1 cut(s) 851
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PstI CTGCAG 2 cut(s) 52, 1008
PsuI RGATCY 1 cut(s) 539
PvuI CGATCG 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 1139
RseI CAYNNNNRTG 3 cut(s) 82, 259, 550
SaqAI TTAA 6 cut(s) 356, 741, 932, 1260, 1274, 1369
SatI GCNGC 3 cut(s) 982, 1004, 1122
Sau3AI GATC 3 cut(s) 162, 166, 539
Sau96I GGNCC 1 cut(s) 851
SchI GAGTC 1 cut(s) 767
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 668
SfaNI GCATC 2 cut(s) 49, 671
SfcI CTRYAG 3 cut(s) 48, 420, 1004
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 3 cut(s) 82, 259, 550
SmlI CTYRAG 2 cut(s) 1196, 1273
SmoI CTYRAG 2 cut(s) 1196, 1273
SnaBI TACGTA 1 cut(s) 224
Sse9I AATT 9 cut(s) 241, 298, 357, 593, 658, 738, 800, 896, 1146
SsiI CCGC 4 cut(s) 536, 910, 1122, 1332
SspI AATATT 3 cut(s) 57, 72, 726
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 808, 1026, 1097
TaiI ACGT 6 cut(s) 226, 390, 579, 652, 736, 923
TaqI TCGA 2 cut(s) 165, 1339
TaqII GACCGA 1 cut(s) 868
TasI AATT 9 cut(s) 241, 298, 357, 593, 658, 738, 800, 896, 1146
TauI GCSGC 1 cut(s) 1124
TfiI GAWTC 6 cut(s) 282, 376, 429, 614, 821, 1286
Tru1I TTAA 6 cut(s) 356, 741, 932, 1260, 1274, 1369
Tru9I TTAA 6 cut(s) 356, 741, 932, 1260, 1274, 1369
TseI GCWGC 2 cut(s) 981, 1003
TspDTI ATGAA 3 cut(s) 81, 459, 642
TspGWI ACGGA 1 cut(s) 264
Vha464I CTTAAG 1 cut(s) 1273
VpaK11BI GGWCC 1 cut(s) 851
VspI ATTAAT 2 cut(s) 741, 1260
XapI RAATTY 2 cut(s) 298, 800
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 213
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.