pycom11g07450

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0018893
Physical Location & Seq
Forward (+)
5674300 .. 5682390
8091 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGGGCAAGGTATGCTTTAGATTAATGTTTCTAATTTGCAATCACTTTTGTGTCCACCTGGAAGACCGCATCATCAATATACAACCACTGATATACAGACGAACACAATTGATTGATCAAGTTGTATGTTCCTACCTGTTTATCACCACAACACTAATGCTTCTAGAAAAATATATGGTTTTGTGCTACAGAACATATGGCAACCATGATTTCCACCATCTTGACTGTAATTCAATGGAAGTGGTTTTCCAACTCAAGGGACCAAAGCATGAAGAAAGTAGTCACTCCGTTGAAGCATTCAATAAATTGAGGTCCTTGTGGTTACATACGTTACCAAGTTTAACACGTGTTTGGGAGACAGGTAGTTCACAACCGATGTTCACAGGAAGCAGTTTCGGAAACTTGAAATCGCTGGAGGTCCATTGTTGCAACCAGTTGAAATACTTGTTTTCTTCGTCCATAGTCAAACTCCTTGCGAGTGTAAAGGACATAAAAGTTACGAACTGTGAGCAGATGGAAGAAATCGTTGCCGCAGAAGAACAAACAGCTGAAATAATTACATTACCTAAAGTGAAGTCCATCAAGCTTAAAAGTCTGCCAAAACTCAAGTATTTTTGTGGTGAAGCTTATACTTTGAAGTTGCCGTCTTTGGAGTTATTGAAGGTTATTAATGTGCAAGACTTAAGGCCATTTGATTCTAAGCTTGTTGACACGCATAATCCCCGATTGCAAGTAAAACCCGCATTTCGACAGGAATGGACAAATTTTTACTACAAATTTAGGGAAAGCATAATCAACAGTTCATATTTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

272

Amino Acids

31.59

Weight (kDa)

8.72

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 75 - 170 3e-18 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 125 - 229 8.7e-15 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 67, 531, 741
AcsI RAATTY 2 cut(s) 763, 776
AcvI CACGTG 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 256
AflII CTTAAG 1 cut(s) 682
AflIII ACRYGT 2 cut(s) 344, 346
AgsI TTSAA 7 cut(s) 234, 293, 301, 406, 439, 637, 661
AjnI CCWGG 1 cut(s) 57
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 4 cut(s) 548, 586, 626, 703
AluI AGCT 4 cut(s) 548, 586, 626, 703
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 1 cut(s) 686
ApoI RAATTY 2 cut(s) 763, 776
AseI ATTAAT 2 cut(s) 23, 669
AspS9I GGNCC 3 cut(s) 260, 312, 418
AsuHPI GGTGA 2 cut(s) 136, 632
AvaII GGWCC 3 cut(s) 260, 312, 418
BbrPI CACGTG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 3 cut(s) 225, 508, 587
BceAI ACGGC 1 cut(s) 628
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 350
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 187
BfrI CTTAAG 1 cut(s) 682
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 3 cut(s) 260, 312, 418
BmgT120I GGNCC 3 cut(s) 260, 312, 418
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 434
BpuEI CTTGAG 2 cut(s) 239, 590
BsaAI YACGTR 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 433
BshFI GGCC 1 cut(s) 688
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 688
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 67, 531, 741
BspANI GGCC 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 261
BspTI CTTAAG 1 cut(s) 682
BsrI ACTGG 1 cut(s) 433
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 227, 506, 800
BstAFI CTTAAG 1 cut(s) 682
BstAPI GCANNNNNTGC 1 cut(s) 12
BstBAI YACGTR 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 699
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 260, 312, 418
CspCI CAANNNNNGTGG 2 cut(s) 222, 257
CviAII CATG 2 cut(s) 206, 269
CviJI RGCY 5 cut(s) 548, 586, 626, 688, 703
CviKI_1 RGCY 5 cut(s) 548, 586, 626, 688, 703
DdeI CTNAG 1 cut(s) 699
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco47I GGWCC 3 cut(s) 260, 312, 418
Eco72I CACGTG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 209, 272
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 273
FatI CATG 2 cut(s) 205, 268
FauI CCCGC 1 cut(s) 748
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 1 cut(s) 688
Hin1II CATG 2 cut(s) 209, 272
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 3 cut(s) 584, 624, 701
HinfI GANTC 1 cut(s) 695
HphI GGTGA 2 cut(s) 136, 632
Hpy166II GTNNAC 4 cut(s) 55, 368, 381, 709
Hpy188I TCNGA 1 cut(s) 398
Hpy188III TCNNGA 2 cut(s) 164, 221
Hpy8I GTNNAC 4 cut(s) 55, 368, 381, 709
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 3 cut(s) 227, 506, 800
HpyCH4IV ACGT 2 cut(s) 329, 346
HpyCH4V TGCA 4 cut(s) 39, 429, 676, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 2 cut(s) 329, 346
Hsp92II CATG 2 cut(s) 209, 272
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 8 cut(s) 44, 71, 149, 345, 369, 398, 446, 737
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 329, 346
MaeIII GTNAC 4 cut(s) 281, 321, 330, 496
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 5 cut(s) 74, 284, 444, 530, 548
MfeI CAATTG 1 cut(s) 107
MluCI AATT 7 cut(s) 33, 107, 229, 305, 555, 763, 776
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 2 cut(s) 303, 409
MseI TTAA 5 cut(s) 23, 341, 588, 669, 683
MslI CAYNNNNRTG 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 682
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 296
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 209, 272
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 48
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 695
PkrI GCNGC 1 cut(s) 532
PmaCI CACGTG 1 cut(s) 347
PmlI CACGTG 1 cut(s) 347
Ppu21I YACGTR 1 cut(s) 347
PpuMI RGGWCCY 1 cut(s) 312
PshBI ATTAAT 2 cut(s) 23, 669
Psp5II RGGWCCY 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 57
PspCI CACGTG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 260, 312, 418
PspPPI RGGWCCY 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 5 cut(s) 23, 341, 588, 669, 683
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 3 cut(s) 260, 312, 418
ScrFI CCNGG 1 cut(s) 59
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 187
SinI GGWCC 3 cut(s) 260, 312, 418
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 3 cut(s) 254, 605, 682
SmoI CTYRAG 3 cut(s) 254, 605, 682
Sse9I AATT 7 cut(s) 33, 107, 229, 305, 555, 763, 776
SsiI CCGC 3 cut(s) 67, 531, 741
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 227, 506, 800
TaiI ACGT 2 cut(s) 332, 349
TaqI TCGA 1 cut(s) 748
TasI AATT 7 cut(s) 33, 107, 229, 305, 555, 763, 776
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 1 cut(s) 695
Tru1I TTAA 5 cut(s) 23, 341, 588, 669, 683
Tru9I TTAA 5 cut(s) 23, 341, 588, 669, 683
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 2 cut(s) 285, 792
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 3 cut(s) 260, 312, 418
VspI ATTAAT 2 cut(s) 23, 669
XapI RAATTY 2 cut(s) 763, 776
XbaI TCTAGA 1 cut(s) 163
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.