pycom11g08130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014134
Physical Location & Seq
Forward (+)
6226943 .. 6228326
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGGCTACCACATCCATAACTCTATCCCGACCACCATCAACTTTCTTCCATTTTCCCAGGCCAAACCATTCCCAATTCCTCAGAACAACCCAGAAACCATCCTTCCCTTTATCCTCCCCAACCACCACAACCAAACGGACCTTAATTTTCAACACCCCAGATGATAATCTCACCCAAAGAAGCACCCCAACTTGGCAAATCAGTGCCACCTCTGCTGAATCTGTGCCTGCAGAAGCCGCCGCCGTCCCACTCGAGACTGCCCAGGAGATAGTGGCCTCTAGTGACGAAGGAGTGTCTGTCGCCATTTCTGCCCTTCTCTTCGTTGCCTTTGTTGGCCTGTCCATTCTCACCATTGGGGTGATCTACCTAGGTGTGACAGATTATCTGCAGAAGAGGGAGAGAGAGAAGCTGGAGAAGGATGAGGCAGATAACAAGAAGAAGGGTGGGAAGAAGAAGAGGGTGAGAGCAAGAGCTGGGCCTAAGGGATTTGGCCAAAAGATTACTATTGATGAACAAGATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.17

Weight (kDa)

9.19

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29180
fragaria_vesca FvH4_3g36880
malus_domestica MD03G1086900.v1.1 MD11G1096000.v1.1
prunus_persica Prupe.6G071500_v2.0.a1
pyrus_communis pycom03g06880 pycom11g08130
rosa_chinensis RchiOBHm_Chr5g0066101
rosa_laevigata RLG00000035842
rosa_multiflora Rmu_sc0002406.1_g000008
rosa_roxburghii Rroxscaffold_1G00014910
rosa_rugosa Rorug05G0376300
rosa_samantha Rh5AG434800 Rh5BG451100 Rh5CG473400 Rh5DG464700
rosa_wichuraiana Rw5G040720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 237, 240
AcoI YGGCCR 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 192
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 56, 261
AluBI AGCT 2 cut(s) 409, 473
AluI AGCT 2 cut(s) 409, 473
Alw26I GTCTC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 59, 273, 334, 476, 490
AspA2I CCTAGG 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 138, 476
AsuHPI GGTGA 4 cut(s) 163, 340, 370, 472
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 138
AvrII CCTAGG 1 cut(s) 367
AxyI CCTNAGG 1 cut(s) 480
BalI TGGCCA 1 cut(s) 492
BccI CCATC 2 cut(s) 43, 106
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 58, 263
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 2 cut(s) 279, 368
BfmI CTRYAG 2 cut(s) 228, 386
BisI GCNGC 2 cut(s) 237, 240
BlnI CCTAGG 1 cut(s) 367
BlsI GCNGC 2 cut(s) 238, 241
Bme1390I CCNGG 2 cut(s) 58, 263
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 138, 476
BmrFI CCNGG 2 cut(s) 58, 263
BpmI CTGGAG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 56, 261, 367
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse21I CCTNAGG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 2 cut(s) 58, 263
BseDI CCNNGG 3 cut(s) 56, 261, 367
BseGI GGATG 3 cut(s) 11, 98, 424
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 473
BshFI GGCC 5 cut(s) 61, 275, 336, 478, 492
BsiHKCI CYCGRG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 248
BsmFI GGGAC 1 cut(s) 230
BsnI GGCC 5 cut(s) 61, 275, 336, 478, 492
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 2 cut(s) 237, 240
BspANI GGCC 5 cut(s) 61, 275, 336, 478, 492
BspCNI CTCAG 1 cut(s) 93
BspMAI CTGCAG 2 cut(s) 232, 390
BssECI CCNNGG 3 cut(s) 56, 261, 367
BssMI GATC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 58, 263
Bst6I CTCTTC 3 cut(s) 323, 386, 449
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 80, 480
BstF5I GGATG 3 cut(s) 11, 98, 424
BstKTI GATC 1 cut(s) 363
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 3 cut(s) 212, 236, 308
BstNI CCWGG 2 cut(s) 58, 263
BstSCI CCNGG 2 cut(s) 56, 261
BstSFI CTRYAG 2 cut(s) 228, 386
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 5 cut(s) 61, 275, 336, 478, 492
BtsCI GGATG 3 cut(s) 11, 98, 424
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 138, 476
CviJI RGCY 9 cut(s) 5, 61, 236, 275, 336, 409, 473, 478, 492
CviKI_1 RGCY 9 cut(s) 5, 61, 236, 275, 336, 409, 473, 478, 492
DdeI CTNAG 2 cut(s) 80, 480
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 3 cut(s) 323, 386, 449
EarI CTCTTC 3 cut(s) 323, 386, 449
Eco130I CCWWGG 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 138
Eco81I CCTNAGG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 56, 261
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaiI YATR 1 cut(s) 17
FaqI GGGAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 2 cut(s) 85, 431
Fsp4HI GCNGC 2 cut(s) 237, 240
FspBI CTAG 2 cut(s) 279, 368
GluI GCNGC 2 cut(s) 237, 240
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 5 cut(s) 61, 275, 336, 478, 492
HinfI GANTC 1 cut(s) 218
HphI GGTGA 4 cut(s) 163, 340, 370, 472
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 27, 253
HpyAV CCTTC 5 cut(s) 112, 281, 323, 409, 433
HpyCH4V TGCA 2 cut(s) 230, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 236, 308
HpyF3I CTNAG 2 cut(s) 80, 480
Kzo9I GATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 279, 368
MaeIII GTNAC 2 cut(s) 281, 373
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 7 cut(s) 37, 310, 403, 448, 460, 463, 466
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 2 cut(s) 74, 144
MluNI TGGCCA 1 cut(s) 492
MnlI CCTC 7 cut(s) 89, 124, 220, 286, 387, 415, 450
Mox20I TGGCCA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 492
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 492
MspR9I CCNGG 2 cut(s) 58, 263
MvaI CCWGG 2 cut(s) 58, 263
MwoI GCNNNNNNNGC 3 cut(s) 212, 236, 308
NdeII GATC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 281, 373
PaeR7I CTCGAG 1 cut(s) 251
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 238, 241
Psp6I CCWGG 2 cut(s) 56, 261
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 2 cut(s) 56, 261
PspPI GGNCC 2 cut(s) 138, 476
PstI CTGCAG 2 cut(s) 232, 390
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 1 cut(s) 360
Sau96I GGNCC 2 cut(s) 138, 476
ScrFI CCNGG 2 cut(s) 58, 263
SetI ASST 6 cut(s) 143, 212, 369, 373, 411, 475
SfcI CTRYAG 2 cut(s) 228, 386
Sfr274I CTCGAG 1 cut(s) 251
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 74, 144
SsiI CCGC 2 cut(s) 237, 240
SspMI CTAG 2 cut(s) 279, 368
StyD4I CCNGG 2 cut(s) 56, 261
StyI CCWWGG 1 cut(s) 367
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 74, 144
TauI GCSGC 2 cut(s) 239, 242
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 281, 373
Tsp45I GTSAC 2 cut(s) 281, 373
TspDTI ATGAA 1 cut(s) 525
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 251
XmaJI CCTAGG 1 cut(s) 367
XspI CTAG 2 cut(s) 279, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.