pycom11g18480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0018401
Physical Location & Seq
Reverse (-)
20660483 .. 20661530
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 564 bp
ATGTGGAGCCCTGAGAGATTGCCATTGCGTAAGGTAAAGGAAGAACATGTGAGCTTCACATCATCAGTTATTGAATTTTTGAAGCTAAAATGCTTCTGGGGAGGAAAGAAGAACATGCGGGAAAAATTAGAGCAGTCCGATAACGAGCAGACTAAGACGAAGAAGCAGCGGCAGCAGCAGATGACAGTGGTTAAGAAGAAAGAGCTCACTTTGGAAGAGTGGTTCTTAGCATCATCGTCGTGCCGAAACGACGATATTGATAATAGGGTTAGTAACAACAGTGAAGGGGAATACTATGGTTCTGGAGGGAATTGGGTTCATCCATCTTTAGGTGGAGAGGATTCAGATGATGTGACCTCCACTTATAGGAACAGTTTTTCTTTGCAGAAGCTGTTGACTGATGAAAGTGGAAGAAGTGATGTCTATGATCCTTGTTTGTGCCGAAAAGAAAGTAGTGGAAAGGTAAAGAGAAGGGTCAGCTTTAAACTACAAGAAGAGGCTGATATATTCATTTTCTGTTCACCGGGTCATCAAGGTGATGTTCAAGAGGAAAGTAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.59

Weight (kDa)

6.35

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018401)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23561
pyrus_communis pycom11g18480
rosa_laevigata RLG00000034079
rosa_roxburghii Rroxscaffold_1G00038950
rosa_rugosa Rorug05G0193600
rosa_samantha Rh5AG279300 Rh5BG283700 Rh5BG284600 Rh5CG316500 Rh5DG293400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 118, 169
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 2 cut(s) 74, 558
AfiI CCNNNNNNNGG 2 cut(s) 329, 366
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 3 cut(s) 74, 82, 545
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 5 cut(s) 54, 85, 205, 391, 480
AluI AGCT 5 cut(s) 54, 85, 205, 391, 480
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 422
AlwNI CAGNNNCTG 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 166, 172, 175
ApoI RAATTY 2 cut(s) 74, 558
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 513, 548
BanII GRGCYC 2 cut(s) 11, 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 178, 184, 187
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BcnI CCSGG 1 cut(s) 525
BisI GCNGC 4 cut(s) 167, 170, 173, 176
BlsI GCNGC 4 cut(s) 168, 171, 174, 177
Bme1390I CCNGG 1 cut(s) 525
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 525
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 366
Bse3DI GCAATG 1 cut(s) 23
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 329, 366
BseMI GCAATG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 178, 184, 187
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 524
BslI CCNNNNNNNGG 2 cut(s) 329, 366
Bsp1286I GDGCHC 2 cut(s) 11, 207
Bsp143I GATC 1 cut(s) 427
BspACI CCGC 2 cut(s) 118, 169
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 23
BssMI GATC 1 cut(s) 427
Bst4CI ACNGT 3 cut(s) 187, 281, 374
Bst6I CTCTTC 2 cut(s) 210, 489
BstDEI CTNAG 3 cut(s) 12, 153, 226
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 1 cut(s) 430
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 2 cut(s) 172, 175
BstNSI RCATGY 2 cut(s) 50, 118
BstSCI CCNGG 1 cut(s) 523
BstV1I GCAGC 3 cut(s) 178, 184, 187
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 192, 286
CaiI CAGNNNCTG 1 cut(s) 391
CviAII CATG 2 cut(s) 47, 115
CviJI RGCY 7 cut(s) 9, 54, 85, 205, 391, 480, 500
CviKI_1 RGCY 7 cut(s) 9, 54, 85, 205, 391, 480, 500
DdeI CTNAG 3 cut(s) 12, 153, 226
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
DraI TTTAAA 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 210, 489
EarI CTCTTC 2 cut(s) 210, 489
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 11, 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 11, 207
FaeI CATG 2 cut(s) 50, 118
FaiI YATR 6 cut(s) 48, 116, 297, 366, 426, 506
FatI CATG 2 cut(s) 46, 114
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 167, 170, 173, 176
FokI GGATG 1 cut(s) 306
FriOI GRGCYC 2 cut(s) 11, 207
Fsp4HI GCNGC 4 cut(s) 167, 170, 173, 176
GluI GCNGC 4 cut(s) 167, 170, 173, 176
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 1 cut(s) 524
Hin1II CATG 2 cut(s) 50, 118
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 524
HphI GGTGA 2 cut(s) 513, 548
Hpy166II GTNNAC 2 cut(s) 396, 521
Hpy188I TCNGA 2 cut(s) 139, 346
Hpy188III TCNNGA 2 cut(s) 303, 545
Hpy8I GTNNAC 2 cut(s) 396, 521
Hpy99I CGWCG 2 cut(s) 241, 254
HpyAV CCTTC 2 cut(s) 278, 465
HpyCH4III ACNGT 3 cut(s) 187, 281, 374
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 175
HpyF3I CTNAG 3 cut(s) 12, 153, 226
Hsp92II CATG 2 cut(s) 50, 118
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 24, 82, 288, 537
Lsp1109I GCAGC 3 cut(s) 178, 184, 187
LweI GCATC 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 272, 352
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 7 cut(s) 53, 121, 172, 208, 227, 423, 506
MhlI GDGCHC 2 cut(s) 11, 207
MluCI AATT 4 cut(s) 74, 125, 310, 558
MnlI CCTC 6 cut(s) 95, 299, 331, 367, 490, 541
MseI TTAA 2 cut(s) 192, 483
MslI CAYNNNNRTG 2 cut(s) 238, 534
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 525
MwoI GCNNNNNNNGC 2 cut(s) 172, 175
NciI CCSGG 1 cut(s) 525
NdeII GATC 1 cut(s) 427
NlaIII CATG 2 cut(s) 50, 118
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 2 cut(s) 50, 118
PciI ACATGT 1 cut(s) 46
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 4 cut(s) 168, 171, 174, 177
PscI ACATGT 1 cut(s) 46
Psp124BI GAGCTC 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 238, 534
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 192, 483
SatI GCNGC 4 cut(s) 167, 170, 173, 176
Sau3AI GATC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 2 cut(s) 11, 207
SfaNI GCATC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 238, 534
Sse9I AATT 4 cut(s) 74, 125, 310, 558
SsiI CCGC 2 cut(s) 118, 169
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 187, 281, 374
TasI AATT 4 cut(s) 74, 125, 310, 558
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 192, 483
Tru9I TTAA 2 cut(s) 192, 483
TscAI CASTG 2 cut(s) 192, 286
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 166, 172, 175
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 308, 417, 499
TspRI CASTG 2 cut(s) 192, 286
XapI RAATTY 2 cut(s) 74, 558
XceI RCATGY 2 cut(s) 50, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.