Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015195

Physical Location & Seq

Genomic Coordinates Forward (+)

23990135 .. 23991356

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAGCTGCTGCTAGCTCAAGCACTCTTCTAAAAACAACCCCATTTCTTGGCCAAAGCCGAGGGCCAAGTTTTAACACTCTCAGAGATGTTGTCCCAGTGGGAACTGGCAAATACACCATGGTGCGTACAGTGAAGTATTTGGGACCCTTTTCTGCTCAGACTCCTTCGTACCTGAACGGAGAATTTCCTGGTGATTACGGCTGGGATACTGCAGGGTTGTCAGCTGACCCAGAGGCCTTTGCTAAGAACCGGGCTCTTGAGGTGATCCATGGCCGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTTCTCGAGAAATGGGTGAGAGTGGACTTCAAAGAGCCAGTGTGGTTCAAAGCCGGAGCTCAAATCTTCTCAGAAGGCGGCCTCGACTATTTGGGCAACCCCAACCTAGTCCACGCTCAGAGCATCCTAGCAGTGCTTGGGTTCCAAGTCATCCTCATGGGTCTCGTTGAAGGATTCCGTATCAACGGTCTTGATGGCGTAGGAGAGGGCAACAACCTCTACCCCGGAGGGCAATACTTCGACCCCCTCGGCCTTGCCGATGACCCTGTCACCTTTGCCGAGCTCAAGGTGAAGGAAATCAAGAATGGGAGGCTAGCCATGTTCTCCATGTTTGGGTTCTTTGTCCAAGCCATTGTGACTGGGAAGGGTCCCCTAGAGAACCTCTTGGACCACCTTGACAACCCTGTAGCTAACAATGCATGGGTCTATGCCACCAAGTTTGTGCCCGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009941 GO:0009987 GO:0010033 GO:0010119 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

258

Amino Acids

27.73

Weight (kDa)

5.42

Isoelectric Point (pI)

20.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	56 - 224	2.5e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54270
fragaria_vesca	FvH4_3g21020
malus_domestica	MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica	Prupe.4G190500_v2.0.a1
pyrus_communis	pycom03g16800 pycom11g20830
rosa_chinensis	RchiOBHm_Chr5g0036051
rosa_laevigata	RLG00000033661
rosa_multiflora	Rmu_sc0001493.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044710
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana	Rw5G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	2 cut(s)	52, 274
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	2 cut(s)	130, 173
AfiI	CCNNNNNNNGG	2 cut(s)	50, 651
AgsI	TTSAA	3 cut(s)	349, 367, 488
AjnI	CCWGG	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	6 cut(s)	8, 18, 227, 377, 601, 728
AluI	AGCT	6 cut(s)	8, 18, 227, 377, 601, 728
Alw21I	GWGCWC	3 cut(s)	298, 379, 603
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	6 cut(s)	52, 65, 237, 274, 397, 568
ApeKI	GCWGC	4 cut(s)	5, 8, 11, 303
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	4 cut(s)	65, 146, 686, 706
AsuC2I	CCSGG	3 cut(s)	254, 543, 765
AsuHPI	GGTGA	6 cut(s)	206, 277, 301, 346, 580, 619
AsuNHI	GCTAGC	2 cut(s)	14, 631
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	146, 686, 706
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	259, 379, 603
Bbv12I	GWGCWC	3 cut(s)	298, 379, 603
BbvI	GCAGC	2 cut(s)	17, 290
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	192
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	3 cut(s)	254, 543, 765
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	6 cut(s)	15, 299, 425, 446, 632, 692
BfmI	CTRYAG	2 cut(s)	213, 723
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	6, 9, 12, 304, 397
BlsI	GCNGC	5 cut(s)	7, 10, 13, 305, 398
Bme1390I	CCNGG	4 cut(s)	192, 254, 543, 765
Bme18I	GGWCC	3 cut(s)	146, 686, 706
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	65, 146, 686, 706
BmiI	GGNNCC	5 cut(s)	147, 148, 461, 687, 688
BmrFI	CCNGG	4 cut(s)	192, 254, 543, 765
BmrI	ACTGGG	2 cut(s)	92, 687
BmsI	GCATC	2 cut(s)	315, 450
BmtI	GCTAGC	2 cut(s)	18, 635
BmuI	ACTGGG	2 cut(s)	92, 687
BpuEI	CTTGAG	3 cut(s)	4, 281, 587
BpuMI	CCSGG	3 cut(s)	254, 543, 765
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	5 cut(s)	61, 120, 271, 541, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 651
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	4 cut(s)	98, 112, 356, 682
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	5 cut(s)	61, 120, 271, 541, 565
BseGI	GGATG	2 cut(s)	441, 468
BseLI	CCNNNNNNNGG	2 cut(s)	50, 651
BseMII	CTCAG	4 cut(s)	97, 173, 402, 449
BseNI	ACTGG	4 cut(s)	98, 112, 356, 682
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	2 cut(s)	17, 290
BseYI	CCCAGC	1 cut(s)	204
BshFI	GGCC	6 cut(s)	54, 67, 239, 276, 399, 570
BsiHKAI	GWGCWC	3 cut(s)	298, 379, 603
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	5 cut(s)	253, 277, 372, 543, 765
BslFI	GGGAC	3 cut(s)	80, 159, 672
BslI	CCNNNNNNNGG	2 cut(s)	50, 651
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	3 cut(s)	80, 159, 672
BsnI	GGCC	6 cut(s)	54, 67, 239, 276, 399, 570
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	5 cut(s)	259, 298, 379, 603, 765
Bsp143I	GATC	2 cut(s)	267, 767
Bsp19I	CCATGG	2 cut(s)	120, 271
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	6 cut(s)	54, 67, 239, 276, 399, 570
BspCNI	CTCAG	4 cut(s)	96, 172, 401, 448
BspLI	GGNNCC	5 cut(s)	147, 148, 461, 687, 688
BspMAI	CTGCAG	1 cut(s)	217
BspOI	GCTAGC	2 cut(s)	18, 635
BspPI	GGATC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	4 cut(s)	98, 112, 356, 682
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	5 cut(s)	61, 120, 271, 541, 565
BssMI	GATC	2 cut(s)	267, 767
BssT1I	CCWWGG	2 cut(s)	120, 271
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	133, 506
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	16, 633
BstDEI	CTNAG	5 cut(s)	83, 159, 246, 388, 435
BstDSI	CCRYGG	2 cut(s)	120, 271
BstF5I	GGATG	2 cut(s)	441, 468
BstKTI	GATC	2 cut(s)	270, 770
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	267, 767
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 734
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	4 cut(s)	190, 252, 541, 763
BstSFI	CTRYAG	2 cut(s)	213, 723
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	17, 290
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	6 cut(s)	54, 67, 239, 276, 399, 570
BtgI	CCRYGG	2 cut(s)	120, 271
BtsCI	GGATG	2 cut(s)	441, 468
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	4 cut(s)	105, 138, 363, 456
Cac8I	GCNNGC	2 cut(s)	16, 633
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	4 cut(s)	65, 146, 686, 706
Csp6I	GTAC	2 cut(s)	129, 172
CspCI	CAANNNNNGTGG	2 cut(s)	739, 774
CviAII	CATG	6 cut(s)	121, 272, 475, 637, 646, 738
CviQI	GTAC	2 cut(s)	129, 172
DdeI	CTNAG	5 cut(s)	83, 159, 246, 388, 435
DpnI	GATC	2 cut(s)	269, 769
DpnII	GATC	2 cut(s)	267, 767
EaeI	YGGCCR	2 cut(s)	52, 274
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	2 cut(s)	377, 601
Eco130I	CCWWGG	2 cut(s)	120, 271
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	3 cut(s)	259, 379, 603
Eco31I	GGTCTC	1 cut(s)	485
Eco47I	GGWCC	3 cut(s)	146, 686, 706
Eco53kI	GAGCTC	2 cut(s)	377, 601
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	2 cut(s)	377, 601
EcoO109I	RGGNCCY	2 cut(s)	146, 686
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	120, 271
EcoT22I	ATGCAT	1 cut(s)	739
EcoT38I	GRGCYC	3 cut(s)	259, 379, 603
ErhI	CCWWGG	2 cut(s)	120, 271
FaeI	CATG	6 cut(s)	124, 275, 478, 640, 649, 741
FaiI	YATR	9 cut(s)	122, 273, 287, 476, 638, 647, 739, 747, 772
FaqI	GGGAC	3 cut(s)	80, 159, 672
FatI	CATG	6 cut(s)	120, 271, 474, 636, 645, 737
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 304, 397
FokI	GGATG	2 cut(s)	428, 455
FriOI	GRGCYC	3 cut(s)	259, 379, 603
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 304, 397
FspBI	CTAG	6 cut(s)	15, 299, 425, 446, 632, 692
GluI	GCNGC	5 cut(s)	6, 9, 12, 304, 397
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	6 cut(s)	54, 67, 239, 276, 399, 570
HapII	CCGG	5 cut(s)	253, 277, 372, 543, 765
Hin1II	CATG	6 cut(s)	124, 275, 478, 640, 649, 741
HinfI	GANTC	2 cut(s)	163, 492
HpaII	CCGG	5 cut(s)	253, 277, 372, 543, 765
HphI	GGTGA	6 cut(s)	206, 277, 301, 346, 580, 619
Hpy166II	GTNNAC	2 cut(s)	343, 430
Hpy188I	TCNGA	4 cut(s)	86, 162, 391, 438
Hpy188III	TCNNGA	5 cut(s)	260, 323, 325, 509, 619
Hpy8I	GTNNAC	2 cut(s)	343, 430
HpyAV	CCTTC	5 cut(s)	177, 386, 482, 604, 676
HpyCH4III	ACNGT	2 cut(s)	133, 506
HpyCH4V	TGCA	3 cut(s)	215, 306, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 734
HpyF3I	CTNAG	5 cut(s)	83, 159, 246, 388, 435
Hsp92II	CATG	6 cut(s)	124, 275, 478, 640, 649, 741
KflI	GGGWCCC	2 cut(s)	146, 686
Kzo9I	GATC	2 cut(s)	267, 767
LmnI	GCTCC	2 cut(s)	293, 374
Lsp1109I	GCAGC	2 cut(s)	17, 290
LweI	GCATC	2 cut(s)	315, 450
MaeI	CTAG	6 cut(s)	15, 299, 425, 446, 632, 692
MaeIII	GTNAC	2 cut(s)	586, 673
MalI	GATC	2 cut(s)	269, 769
MboI	GATC	2 cut(s)	267, 767
MboII	GAAGA	2 cut(s)	20, 376
MhlI	GDGCHC	5 cut(s)	259, 298, 379, 603, 765
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	2 cut(s)	122, 473
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	8, 227
MspI	CCGG	5 cut(s)	253, 277, 372, 543, 765
MspR9I	CCNGG	4 cut(s)	192, 254, 543, 765
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	11, 734
NciI	CCSGG	3 cut(s)	254, 543, 765
NcoI	CCATGG	2 cut(s)	120, 271
NdeII	GATC	2 cut(s)	267, 767
NheI	GCTAGC	2 cut(s)	14, 631
NlaIII	CATG	6 cut(s)	124, 275, 478, 640, 649, 741
NlaIV	GGNNCC	5 cut(s)	147, 148, 461, 687, 688
NmeAIII	GCCGAG	3 cut(s)	86, 546, 622
NmuCI	GTSAC	2 cut(s)	586, 673
NsiI	ATGCAT	1 cut(s)	739
OliI	CACNNNNGTG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	492
PflFI	GACNNNGTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	7, 10, 13, 305, 398
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	2 cut(s)	146, 686
Psp124BI	GAGCTC	2 cut(s)	379, 603
Psp5II	RGGWCCY	2 cut(s)	146, 686
Psp6I	CCWGG	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	5 cut(s)	147, 148, 461, 687, 688
PspPI	GGNCC	4 cut(s)	65, 146, 686, 706
PspPPI	RGGWCCY	2 cut(s)	146, 686
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	584
PvuII	CAGCTG	2 cut(s)	8, 227
RsaI	GTAC	2 cut(s)	130, 173
RsaNI	GTAC	2 cut(s)	129, 172
RseI	CAYNNNNRTG	2 cut(s)	122, 473
SacI	GAGCTC	2 cut(s)	379, 603
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	5 cut(s)	6, 9, 12, 304, 397
Sau3AI	GATC	2 cut(s)	267, 767
Sau96I	GGNCC	4 cut(s)	65, 146, 686, 706
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	4 cut(s)	192, 254, 543, 765
SduI	GDGCHC	5 cut(s)	259, 298, 379, 603, 765
SfaNI	GCATC	2 cut(s)	315, 450
SfcI	CTRYAG	2 cut(s)	213, 723
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	3 cut(s)	146, 686, 706
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	2 cut(s)	122, 473
SmlI	CTYRAG	4 cut(s)	19, 260, 323, 602
SmoI	CTYRAG	4 cut(s)	19, 260, 323, 602
Sse9I	AATT	1 cut(s)	185
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	6 cut(s)	15, 299, 425, 446, 632, 692
SstI	GAGCTC	2 cut(s)	379, 603
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	4 cut(s)	190, 252, 541, 763
StyI	CCWWGG	2 cut(s)	120, 271
TaaI	ACNGT	2 cut(s)	133, 506
TaqI	TCGA	3 cut(s)	324, 402, 558
TasI	AATT	1 cut(s)	185
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	4 cut(s)	105, 138, 363, 456
TseFI	GTSAC	2 cut(s)	586, 673
TseI	GCWGC	4 cut(s)	5, 8, 11, 303
Tsp45I	GTSAC	2 cut(s)	586, 673
TspGWI	ACGGA	2 cut(s)	195, 485
TspRI	CASTG	4 cut(s)	105, 138, 363, 456
Tth111I	GACNNNGTC	1 cut(s)	584
Van91I	CCANNNNNTGG	1 cut(s)	50
VpaK11BI	GGWCC	3 cut(s)	146, 686, 706
XapI	RAATTY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	6 cut(s)	15, 299, 425, 446, 632, 692
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.