pycom11g20870

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012843
Physical Location & Seq
Reverse (-)
24027992 .. 24029394
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
ATGTCTACGAGCACGAGCAACACCTGGTTACTCACTCTAAAGGTTGCGCTGATATCCACTGGTGTGGTCTCCATCGCCGTGGGGCTGAAACTCTCAGCTCCAGTGGTCGCCGACGCCGTCACCTCCCATGTCCCTTCTCTCTGGAGCTCCGCCGTCTCCTGGCTCAGACCTCCGTATCTCTACATAATCATCAACTGTATCATCATCAGCATCGTCGCCTCCTCCAAGCTCCACCCCAAACCCGAAGATTCGACGCCGGTGACGGAGCAGGAGCTGGTGAGGGTCTCTCCCGTGACGACAGCAAAGATATCCACACAAATTAGTCCTGACTACACAGCGTACGACTGCATCGTTCCGAGTGAGTCCGATTACGATGAGAATGTTCTGACGAAGGTGTTGGATTCGTACGGAGGAGTGCTAGTAGAACCAATGGTTTCGGAGGTGGTGAAGGGGAAGGAGGAGAATAGCGAAGATCTGGCGGCGATTGAAGGCGGAGATGAGGCCGCCGCGGTATCGACGCCTGTAAAGACGAGTTTGCAGAGGAAGGACTCTATGGAGTTCTGGTTGGACGAGAACCAGAAACCGCCGGTTTCCGCTCATATCGGTCACAGAAGATCCGTTAAAGCCGTTAAAGCTAGCCCTGAAGGGGGAAAGTCGTTCGGAGTATCGAAGCCGAAGCGGAACGACACGCTGGAGAGCACGTGGAAGACGATAACGGAAGCGCGGTCGGTGCCGTTAGCAAGGCACCTGAAGAAGTCGGACGCGTGGGACACGCACGTGCAGGGGATAGACGAGAACACGCCGCCTCCGAAGCCCAAGATGAACAAGTCGGAGACGTTCCAGGAGCGGAGCAACGCGAACTCTCCGCCTCCGAACCCGAAGATGAAAAAGTCGGAGACGTTCCAGGAGCGAAGCAGCGCGAACTCGCCGTCGCTCGCTCTGTCGTCGGGGTCGGGGCGGCTGAGGAAGGAGCCGTCGCTGAGTCAGGACGAGTTGAACCGGCGGGTGGAGGCGTTCATCAATAAGTTTAACGAGGAAATGAGGCTGCAGAGGCAGGAGTCGTTGAATCAGTACCAGAAGATGGTGAACCGCGGGGCCAAGGCTCCAATGGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

373

Amino Acids

40.83

Weight (kDa)

8.32

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4408 PF14364 45 - 77 6.6e-15 Domain of unknown function (DUF4408)
DUF761 PF05553 329 - 364 3.9e-16 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54300
fragaria_vesca FvH4_3g20920
malus_domestica MD03G1219300.v1.1 MD11G1237400.v1.1
prunus_persica Prupe.4G189800_v2.0.a1
pyrus_communis pycom03g16840 pycom11g20870
rosa_chinensis RchiOBHm_Chr5g0035351
rosa_laevigata RLG00000033619
rosa_multiflora Rmu_sc0007948.1_g000015 Rmu_sc0032746.1_g000001
rosa_roxburghii Rroxscaffold_1G00045050
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244500 Rh5BG244000 Rh5CG275800 Rh5DG253000
rosa_wichuraiana Rw5G022330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 730, 744
AccB7I CCANNNNNTGG 1 cut(s) 1081
AccBSI CCGCTC 2 cut(s) 596, 847
AccI GTMKAC 1 cut(s) 5
AccII CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
AclWI GGATC 1 cut(s) 609
AcuI CTGAAG 2 cut(s) 663, 770
AcvI CACGTG 2 cut(s) 702, 778
AcyI GRCGYC 3 cut(s) 114, 254, 518
AfaI GTAC 3 cut(s) 341, 407, 1073
AfiI CCNNNNNNNGG 5 cut(s) 159, 646, 647, 1006, 1081
AflIII ACRYGT 1 cut(s) 762
AgsI TTSAA 3 cut(s) 488, 997, 1066
AjnI CCWGG 4 cut(s) 23, 158, 840, 903
AleI CACNNNNGTG 2 cut(s) 62, 776
AluBI AGCT 5 cut(s) 98, 147, 229, 274, 635
AluI AGCT 5 cut(s) 98, 147, 229, 274, 635
Alw21I GWGCWC 3 cut(s) 14, 149, 701
Alw26I GTCTC 5 cut(s) 73, 160, 289, 827, 890
AlwI GGATC 1 cut(s) 609
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 2 cut(s) 501, 1095
ApeKI GCWGC 2 cut(s) 915, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AspLEI GCGC 3 cut(s) 49, 724, 920
AspS9I GGNCC 1 cut(s) 1095
AsuHPI GGTGA 5 cut(s) 112, 271, 289, 457, 1096
AsuNHI GCTAGC 1 cut(s) 635
BaeI ACNNNNGTAYC 2 cut(s) 158, 191
BanI GGYRCC 2 cut(s) 730, 744
BanII GRGCYC 1 cut(s) 149
BauI CACGAG 1 cut(s) 13
BbrPI CACGTG 2 cut(s) 702, 778
BbsI GAAGAC 1 cut(s) 713
Bbv12I GWGCWC 3 cut(s) 14, 149, 701
BbvCI CCTCAGC 1 cut(s) 962
BbvI GCAGC 2 cut(s) 927, 1032
BccI CCATC 2 cut(s) 80, 1075
BceAI ACGGC 7 cut(s) 62, 101, 137, 611, 718, 913, 958
BciT130I CCWGG 4 cut(s) 25, 160, 842, 905
BcoDI GTCTC 5 cut(s) 73, 160, 289, 827, 890
BfaI CTAG 2 cut(s) 419, 636
BfmI CTRYAG 1 cut(s) 1046
BglII AGATCT 1 cut(s) 472
BisI GCNGC 7 cut(s) 480, 504, 507, 803, 916, 959, 1046
BlsI GCNGC 7 cut(s) 481, 505, 508, 804, 917, 960, 1047
Bme1390I CCNGG 4 cut(s) 25, 160, 842, 905
BmgT120I GGNCC 1 cut(s) 1095
BmiI GGNNCC 5 cut(s) 732, 746, 972, 1096, 1104
BmrFI CCNGG 4 cut(s) 25, 160, 842, 905
BmsI GCATC 2 cut(s) 219, 357
BmtI GCTAGC 1 cut(s) 639
BpiI GAAGAC 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 3 cut(s) 84, 163, 713
Bpu10I CCTNAGC 1 cut(s) 962
BsaAI YACGTR 2 cut(s) 702, 778
BsaHI GRCGYC 3 cut(s) 114, 254, 518
BsaI GGTCTC 2 cut(s) 73, 289
BsaJI CCNNGG 4 cut(s) 78, 507, 1090, 1098
BsaXI ACNNNNNCTCC 8 cut(s) 405, 435, 548, 578, 686, 716, 790, 820
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 646, 647, 1006, 1081
Bse118I RCCGGY 3 cut(s) 256, 586, 999
Bse1I ACTGG 2 cut(s) 64, 101
BseBI CCWGG 4 cut(s) 25, 160, 842, 905
BseDI CCNNGG 4 cut(s) 78, 507, 1090, 1098
BseLI CCNNNNNNNGG 5 cut(s) 159, 646, 647, 1006, 1081
BseMII CTCAG 4 cut(s) 108, 178, 953, 971
BseNI ACTGG 2 cut(s) 64, 101
BseRI GAGGAG 3 cut(s) 211, 426, 473
BseXI GCAGC 2 cut(s) 927, 1032
BsgI GTGCAG 1 cut(s) 800
Bsh1236I CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
Bsh1285I CGRYCG 1 cut(s) 728
BshFI GGCC 2 cut(s) 503, 1097
BshNI GGYRCC 2 cut(s) 730, 744
BsiEI CGRYCG 1 cut(s) 728
BsiHKAI GWGCWC 3 cut(s) 14, 149, 701
BsiSI CCGG 3 cut(s) 257, 587, 1000
BsiWI CGTACG 2 cut(s) 339, 405
BslFI GGGAC 2 cut(s) 116, 782
BslI CCNNNNNNNGG 5 cut(s) 159, 646, 647, 1006, 1081
BsmAI GTCTC 5 cut(s) 73, 160, 289, 827, 890
BsmBI CGTCTC 3 cut(s) 160, 827, 890
BsmFI GGGAC 2 cut(s) 116, 782
BsnI GGCC 2 cut(s) 503, 1097
Bso31I GGTCTC 2 cut(s) 73, 289
Bsp1286I GDGCHC 3 cut(s) 14, 149, 701
Bsp143I GATC 2 cut(s) 472, 614
BspANI GGCC 2 cut(s) 503, 1097
BspCNI CTCAG 4 cut(s) 107, 177, 954, 972
BspFNI CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
BspLI GGNNCC 5 cut(s) 732, 746, 972, 1096, 1104
BspMAI CTGCAG 1 cut(s) 1050
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 2 cut(s) 730, 744
BspTNI GGTCTC 2 cut(s) 73, 289
BsrBI CCGCTC 2 cut(s) 596, 847
BsrFI RCCGGY 3 cut(s) 256, 586, 999
BsrI ACTGG 2 cut(s) 64, 101
BssAI RCCGGY 3 cut(s) 256, 586, 999
BssECI CCNNGG 4 cut(s) 78, 507, 1090, 1098
BssMI GATC 2 cut(s) 472, 614
BssNI GRCGYC 3 cut(s) 114, 254, 518
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 1098
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 4 cut(s) 25, 160, 842, 905
Bst4CI ACNGT 1 cut(s) 197
BstACI GRCGYC 3 cut(s) 114, 254, 518
BstBAI YACGTR 2 cut(s) 702, 778
BstC8I GCNNGC 2 cut(s) 637, 936
BstDEI CTNAG 4 cut(s) 94, 164, 962, 980
BstDSI CCRYGG 3 cut(s) 78, 507, 1090
BstFNI CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
BstHHI GCGC 3 cut(s) 49, 724, 920
BstKTI GATC 2 cut(s) 475, 617
BstMAI GTCTC 5 cut(s) 73, 160, 289, 827, 890
BstMBI GATC 2 cut(s) 472, 614
BstMCI CGRYCG 1 cut(s) 728
BstMWI GCNNNNNNNGC 5 cut(s) 632, 730, 811, 1051, 1109
BstNI CCWGG 4 cut(s) 25, 160, 842, 905
BstSCI CCNGG 4 cut(s) 23, 158, 840, 903
BstSFI CTRYAG 1 cut(s) 1046
BstUI CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
BstV1I GCAGC 2 cut(s) 927, 1032
BstV2I GAAGAC 1 cut(s) 713
BstX2I RGATCY 2 cut(s) 472, 614
BstXI CCANNNNNNTGG 2 cut(s) 64, 79
BstYI RGATCY 2 cut(s) 472, 614
BsuRI GGCC 2 cut(s) 503, 1097
BtgI CCRYGG 3 cut(s) 78, 507, 1090
BtgZI GCGATG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 57, 108
Cac8I GCNNGC 2 cut(s) 637, 936
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 3 cut(s) 49, 724, 920
Cfr10I RCCGGY 3 cut(s) 256, 586, 999
Cfr13I GGNCC 1 cut(s) 1095
Cfr42I CCGCGG 2 cut(s) 510, 1093
CseI GACGC 4 cut(s) 122, 262, 526, 770
CsiI ACCWGGT 1 cut(s) 23
Csp6I GTAC 3 cut(s) 340, 406, 1072
CviAII CATG 1 cut(s) 128
CviQI GTAC 3 cut(s) 340, 406, 1072
DdeI CTNAG 4 cut(s) 94, 164, 962, 980
DpnI GATC 2 cut(s) 474, 616
DpnII GATC 2 cut(s) 472, 614
EciI GGCGGA 3 cut(s) 139, 507, 855
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 1098
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 2 cut(s) 73, 289
Eco32I GATATC 2 cut(s) 54, 309
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 663, 770
Eco72I CACGTG 2 cut(s) 702, 778
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 4 cut(s) 23, 158, 840, 903
EcoRV GATATC 2 cut(s) 54, 309
EcoT14I CCWWGG 1 cut(s) 1098
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 1098
Esp3I CGTCTC 3 cut(s) 160, 827, 890
FaeI CATG 1 cut(s) 131
FaiI YATR 4 cut(s) 129, 185, 554, 600
FaqI GGGAC 2 cut(s) 116, 782
FatI CATG 1 cut(s) 127
FauI CCCGC 2 cut(s) 996, 1085
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 7 cut(s) 480, 504, 507, 803, 916, 959, 1046
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 7 cut(s) 480, 504, 507, 803, 916, 959, 1046
FspBI CTAG 2 cut(s) 419, 636
GlaI GCGC 3 cut(s) 48, 723, 919
GluI GCNGC 7 cut(s) 480, 504, 507, 803, 916, 959, 1046
GsuI CTGGAG 3 cut(s) 84, 163, 713
HaeIII GGCC 2 cut(s) 503, 1097
HapII CCGG 3 cut(s) 257, 587, 1000
HgaI GACGC 4 cut(s) 122, 262, 526, 770
HhaI GCGC 3 cut(s) 49, 724, 920
Hin1I GRCGYC 3 cut(s) 114, 254, 518
Hin1II CATG 1 cut(s) 131
Hin6I GCGC 3 cut(s) 47, 722, 918
HinP1I GCGC 3 cut(s) 47, 722, 918
HinfI GANTC 7 cut(s) 248, 362, 401, 548, 982, 1058, 1066
HpaII CCGG 3 cut(s) 257, 587, 1000
HphI GGTGA 5 cut(s) 112, 271, 289, 457, 1096
Hpy166II GTNNAC 2 cut(s) 6, 1087
Hpy188III TCNNGA 3 cut(s) 142, 326, 986
Hpy8I GTNNAC 2 cut(s) 6, 1087
Hpy99I CGWCG 7 cut(s) 116, 218, 256, 520, 934, 949, 979
HpyAV CCTTC 8 cut(s) 144, 385, 442, 448, 482, 538, 638, 961
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 4 cut(s) 701, 777, 836, 899
HpyCH4V TGCA 4 cut(s) 348, 538, 781, 1048
HpyF10VI GCNNNNNNNGC 5 cut(s) 632, 730, 811, 1051, 1109
HpyF3I CTNAG 4 cut(s) 94, 164, 962, 980
HpySE526I ACGT 4 cut(s) 701, 777, 836, 899
Hsp92I GRCGYC 3 cut(s) 114, 254, 518
Hsp92II CATG 1 cut(s) 131
HspAI GCGC 3 cut(s) 47, 722, 918
KspI CCGCGG 2 cut(s) 510, 1093
Kzo9I GATC 2 cut(s) 472, 614
Lsp1109I GCAGC 2 cut(s) 927, 1032
LweI GCATC 2 cut(s) 219, 357
MabI ACCWGGT 1 cut(s) 23
MaeI CTAG 2 cut(s) 419, 636
MaeII ACGT 4 cut(s) 701, 777, 836, 899
MaeIII GTNAC 5 cut(s) 27, 118, 259, 292, 605
MalI GATC 2 cut(s) 474, 616
MbiI CCGCTC 2 cut(s) 596, 847
MboI GATC 2 cut(s) 472, 614
MboII GAAGA 7 cut(s) 257, 482, 624, 718, 763, 892, 1090
MflI RGATCY 2 cut(s) 472, 614
MhlI GDGCHC 3 cut(s) 14, 149, 701
MluCI AATT 1 cut(s) 318
MluI ACGCGT 1 cut(s) 762
MlyI GAGTC 4 cut(s) 371, 542, 991, 1067
MmeI TCCRAC 5 cut(s) 378, 546, 738, 810, 873
MseI TTAA 3 cut(s) 621, 630, 1029
MslI CAYNNNNRTG 3 cut(s) 62, 77, 776
MspA1I CMGCKG 2 cut(s) 509, 1092
MspI CCGG 3 cut(s) 257, 587, 1000
MspR9I CCNGG 4 cut(s) 25, 160, 842, 905
MvaI CCWGG 4 cut(s) 25, 160, 842, 905
MvnI CGCG 6 cut(s) 509, 724, 764, 857, 920, 1092
MwoI GCNNNNNNNGC 5 cut(s) 632, 730, 811, 1051, 1109
NdeII GATC 2 cut(s) 472, 614
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 5 cut(s) 732, 746, 972, 1096, 1104
NmuCI GTSAC 4 cut(s) 118, 259, 292, 605
OliI CACNNNNGTG 2 cut(s) 62, 776
PcsI WCGNNNNNNNCGW 4 cut(s) 114, 348, 707, 806
PfeI GAWTC 3 cut(s) 248, 401, 1066
Pfl23II CGTACG 2 cut(s) 339, 405
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 1081
PfoI TCCNGGA 2 cut(s) 840, 903
PkrI GCNGC 7 cut(s) 481, 505, 508, 804, 917, 960, 1047
PleI GAGTC 4 cut(s) 370, 542, 990, 1066
PmaCI CACGTG 2 cut(s) 702, 778
PmlI CACGTG 2 cut(s) 702, 778
PpsI GAGTC 4 cut(s) 370, 542, 990, 1066
Ppu21I YACGTR 2 cut(s) 702, 778
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 4 cut(s) 23, 158, 840, 903
PspCI CACGTG 2 cut(s) 702, 778
PspGI CCWGG 4 cut(s) 23, 158, 840, 903
PspLI CGTACG 2 cut(s) 339, 405
PspN4I GGNNCC 5 cut(s) 732, 746, 972, 1096, 1104
PspPI GGNCC 1 cut(s) 1095
PstI CTGCAG 1 cut(s) 1050
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 2 cut(s) 472, 614
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 3 cut(s) 341, 407, 1073
RsaNI GTAC 3 cut(s) 340, 406, 1072
RseI CAYNNNNRTG 3 cut(s) 62, 77, 776
SacI GAGCTC 1 cut(s) 149
SacII CCGCGG 2 cut(s) 510, 1093
SaqAI TTAA 3 cut(s) 621, 630, 1029
SatI GCNGC 7 cut(s) 480, 504, 507, 803, 916, 959, 1046
Sau3AI GATC 2 cut(s) 472, 614
Sau96I GGNCC 1 cut(s) 1095
SchI GAGTC 4 cut(s) 371, 542, 991, 1067
ScrFI CCNGG 4 cut(s) 25, 160, 842, 905
SduI GDGCHC 3 cut(s) 14, 149, 701
SexAI ACCWGGT 1 cut(s) 23
SfaNI GCATC 2 cut(s) 219, 357
SfcI CTRYAG 1 cut(s) 1046
Sfr303I CCGCGG 2 cut(s) 510, 1093
SgrAI CRCCGGYG 1 cut(s) 256
SgrBI CCGCGG 2 cut(s) 510, 1093
SmiMI CAYNNNNRTG 3 cut(s) 62, 77, 776
Sse9I AATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 419, 636
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 4 cut(s) 23, 158, 840, 903
StyI CCWWGG 1 cut(s) 1098
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 4 cut(s) 704, 780, 839, 902
TaqI TCGA 3 cut(s) 251, 515, 668
TaqII GACCGA 1 cut(s) 593
TasI AATT 1 cut(s) 318
TauI GCSGC 5 cut(s) 482, 506, 509, 805, 961
TfiI GAWTC 3 cut(s) 248, 401, 1066
Tru1I TTAA 3 cut(s) 621, 630, 1029
Tru9I TTAA 3 cut(s) 621, 630, 1029
TscAI CASTG 2 cut(s) 64, 108
TseFI GTSAC 4 cut(s) 118, 259, 292, 605
TseI GCWGC 2 cut(s) 915, 1045
Tsp45I GTSAC 4 cut(s) 118, 259, 292, 605
TspDTI ATGAA 3 cut(s) 836, 899, 1006
TspGWI ACGGA 5 cut(s) 162, 278, 423, 607, 731
TspRI CASTG 2 cut(s) 64, 108
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 419, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.