Rmu_sc0032746.1_g000001

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032746.1
OG0012843
Physical Location & Seq
Reverse (-)
2 .. 1020
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032746.1_g000001.1.cds

Sequence Viewer

Length: 785 bp
ctgtcgccggaaaaggtaagattccgaccacccgctagaaatgtcgaagagttggagcaacaactggttactctccctcaagatcgtgctgatctccaccggcgtcgtctccatggctccaagctccataatccaaaatccgaagataatctcgattccgaaactattccgccgccgccggagatggtagccgtcgctccggtatcgacggtggagatccccgccgcggaagtgaggcctgagtacacatcctacaacggcgtcgctctgagcgagtacggttatgattccaatgtgtcgccggaggtttccgattcgtacggagatgcagcggcggttgagaccgttgaggatttgaacgcggagccggagaaggagaagagcgaggttcttaacgtcggtgatgacgccgcggcggcggcatccaggcctgcacggagtggtttgcagaggaaggattccatggagttttggttgaatgagaaccagaggccaccggtttctgctagattcgctcacagaaaagctagccctgaagtagggaggtcgttgggagtgtcgaagccgaagaggcacgacacgctggagagcacgtggaagacgataacggacggccggtcggtgccgttaacgaggcacctgaagaagtccgacacgtgggagcggcgaatggaccagaatacccctcctgcgaacaacaggacaatgaacaagtcggagacgttccacgagcggagcagcacgactgcgaccgggtcgccggtgagacagtcgcccgggggacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

262

Amino Acids

29.11

Weight (kDa)

6.22

Isoelectric Point (pI)

68.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54300
fragaria_vesca FvH4_3g20920
malus_domestica MD03G1219300.v1.1 MD11G1237400.v1.1
prunus_persica Prupe.4G189800_v2.0.a1
pyrus_communis pycom03g16840 pycom11g20870
rosa_chinensis RchiOBHm_Chr5g0035351
rosa_laevigata RLG00000033619
rosa_multiflora Rmu_sc0007948.1_g000015 Rmu_sc0032746.1_g000001
rosa_roxburghii Rroxscaffold_1G00045050
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244500 Rh5BG244000 Rh5CG275800 Rh5DG253000
rosa_wichuraiana Rw5G022330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 636
AccBSI CCGCTC 2 cut(s) 664, 733
AccII CGCG 3 cut(s) 227, 362, 413
AclWI GGATC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 555, 662
AcvI CACGTG 2 cut(s) 594, 657
AcyI GRCGYC 3 cut(s) 103, 261, 408
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 3 cut(s) 245, 278, 320
AfiI CCNNNNNNNGG 3 cut(s) 226, 539, 657
AflIII ACRYGT 1 cut(s) 654
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 2 cut(s) 358, 478
AhdI GACNNNNNGTC 1 cut(s) 616
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 2 cut(s) 124, 527
AluI AGCT 2 cut(s) 124, 527
Alw21I GWGCWC 1 cut(s) 593
Alw26I GTCTC 4 cut(s) 113, 335, 713, 760
AlwI GGATC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 4 cut(s) 236, 428, 491, 613
ApeKI GCWGC 2 cut(s) 329, 738
AsiGI ACCGGT 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 673
AsuC2I CCSGG 3 cut(s) 754, 777, 778
AsuHPI GGTGA 2 cut(s) 413, 775
AsuNHI GCTAGC 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 776
AvaII GGWCC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 622, 636
BauI CACGAG 1 cut(s) 728
BbrPI CACGTG 2 cut(s) 594, 657
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 593
BbvI GCAGC 2 cut(s) 341, 750
BccI CCATC 1 cut(s) 178
BceAI ACGGC 4 cut(s) 176, 274, 610, 628
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 3 cut(s) 754, 777, 778
BcoDI GTCTC 4 cut(s) 113, 335, 713, 760
BfaI CTAG 3 cut(s) 36, 507, 528
BglI GCCNNNNNGGC 2 cut(s) 416, 571
Bme1390I CCNGG 4 cut(s) 427, 754, 777, 778
Bme18I GGWCC 1 cut(s) 673
BmeRI GACNNNNNGTC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 4 cut(s) 118, 366, 624, 638
BmrFI CCNGG 4 cut(s) 427, 754, 777, 778
BmsI GCATC 2 cut(s) 316, 431
BmtI GCTAGC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 3 cut(s) 754, 777, 778
BsaAI YACGTR 2 cut(s) 594, 657
BsaHI GRCGYC 3 cut(s) 103, 261, 408
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 6 cut(s) 112, 225, 411, 462, 776, 777
BsaWI WCCGGW 2 cut(s) 199, 496
BsaXI ACNNNNNCTCC 4 cut(s) 458, 488, 578, 608
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 539, 657
Bse118I RCCGGY 4 cut(s) 99, 496, 615, 760
Bse1I ACTGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 6 cut(s) 112, 225, 411, 462, 776, 777
BseGI GGATG 2 cut(s) 248, 422
BseLI CCNNNNNNNGG 3 cut(s) 226, 539, 657
BseMII CTCAG 2 cut(s) 231, 260
BseNI ACTGG 1 cut(s) 69
BseX3I CGGCCG 1 cut(s) 613
BseXI GCAGC 2 cut(s) 341, 750
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 3 cut(s) 227, 362, 413
Bsh1285I CGRYCG 3 cut(s) 616, 620, 753
BshFI GGCC 4 cut(s) 238, 430, 493, 615
BshNI GGYRCC 2 cut(s) 622, 636
BshTI ACCGGT 1 cut(s) 496
BsiEI CGRYCG 3 cut(s) 616, 620, 753
BsiHKAI GWGCWC 1 cut(s) 593
BsiHKCI CYCGRG 1 cut(s) 776
BsiWI CGTACG 1 cut(s) 318
BslI CCNNNNNNNGG 3 cut(s) 226, 539, 657
BsmAI GTCTC 4 cut(s) 113, 335, 713, 760
BsmBI CGTCTC 2 cut(s) 113, 713
BsnI GGCC 4 cut(s) 238, 430, 493, 615
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 776
Bsp1286I GDGCHC 1 cut(s) 593
Bsp143I GATC 3 cut(s) 82, 91, 216
Bsp19I CCATGG 2 cut(s) 112, 462
BspANI GGCC 4 cut(s) 238, 430, 493, 615
BspCNI CTCAG 2 cut(s) 232, 261
BspFNI CGCG 3 cut(s) 227, 362, 413
BspLI GGNNCC 4 cut(s) 118, 366, 624, 638
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 374
BspT107I GGYRCC 2 cut(s) 622, 636
BspTNI GGTCTC 1 cut(s) 335
BsrBI CCGCTC 2 cut(s) 664, 733
BsrFI RCCGGY 4 cut(s) 99, 496, 615, 760
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 4 cut(s) 99, 496, 615, 760
BssECI CCNNGG 6 cut(s) 112, 225, 411, 462, 776, 777
BssMI GATC 3 cut(s) 82, 91, 216
BssNI GRCGYC 3 cut(s) 103, 261, 408
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 2 cut(s) 112, 462
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 4 cut(s) 211, 281, 346, 771
Bst6I CTCTTC 3 cut(s) 42, 374, 563
BstACI GRCGYC 3 cut(s) 103, 261, 408
BstBAI YACGTR 2 cut(s) 594, 657
BstC8I GCNNGC 2 cut(s) 432, 529
BstDEI CTNAG 2 cut(s) 240, 269
BstDSI CCRYGG 4 cut(s) 112, 225, 411, 462
BstENI CCTNNNNNAGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 248, 422
BstFNI CGCG 3 cut(s) 227, 362, 413
BstKTI GATC 3 cut(s) 85, 94, 219
BstMAI GTCTC 4 cut(s) 113, 335, 713, 760
BstMBI GATC 3 cut(s) 82, 91, 216
BstMCI CGRYCG 3 cut(s) 616, 620, 753
BstMWI GCNNNNNNNGC 5 cut(s) 416, 419, 512, 571, 580
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 4 cut(s) 425, 752, 775, 776
BstUI CGCG 3 cut(s) 227, 362, 413
BstV1I GCAGC 2 cut(s) 341, 750
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BstZI CGGCCG 1 cut(s) 613
BsuRI GGCC 4 cut(s) 238, 430, 493, 615
BtgI CCRYGG 4 cut(s) 112, 225, 411, 462
BtsCI GGATG 2 cut(s) 248, 422
Cac8I GCNNGC 2 cut(s) 432, 529
Cfr10I RCCGGY 4 cut(s) 99, 496, 615, 760
Cfr13I GGNCC 1 cut(s) 673
Cfr42I CCGCGG 2 cut(s) 228, 414
Cfr9I CCCGGG 1 cut(s) 776
CseI GACGC 3 cut(s) 92, 250, 416
Csp6I GTAC 3 cut(s) 244, 277, 319
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 2 cut(s) 113, 463
CviQI GTAC 3 cut(s) 244, 277, 319
DdeI CTNAG 2 cut(s) 240, 269
DpnI GATC 3 cut(s) 84, 93, 218
DpnII GATC 3 cut(s) 82, 91, 216
DraIII CACNNNGTG 1 cut(s) 440
DriI GACNNNNNGTC 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 613
EagI CGGCCG 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 42, 374, 563
Eam1105I GACNNNNNGTC 1 cut(s) 616
EarI CTCTTC 3 cut(s) 42, 374, 563
EciI GGCGGA 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 613
Eco130I CCWWGG 2 cut(s) 112, 462
Eco147I AGGCCT 2 cut(s) 238, 430
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 673
Eco52I CGGCCG 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 555, 662
Eco72I CACGTG 2 cut(s) 594, 657
Eco88I CYCGRG 1 cut(s) 776
EcoNI CCTNNNNNAGG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 112, 462
ErhI CCWWGG 2 cut(s) 112, 462
Esp3I CGTCTC 2 cut(s) 113, 713
FaeI CATG 2 cut(s) 116, 466
FaiI YATR 4 cut(s) 114, 129, 285, 464
FatI CATG 2 cut(s) 112, 462
FauI CCCGC 2 cut(s) 40, 229
FokI GGATG 2 cut(s) 235, 409
FspBI CTAG 3 cut(s) 36, 507, 528
GsuI CTGGAG 1 cut(s) 605
HaeIII GGCC 4 cut(s) 238, 430, 493, 615
HgaI GACGC 3 cut(s) 92, 250, 416
Hin1I GRCGYC 3 cut(s) 103, 261, 408
Hin1II CATG 2 cut(s) 116, 466
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 6 cut(s) 21, 155, 287, 314, 458, 510
HpaI GTTAAC 1 cut(s) 630
HphI GGTGA 2 cut(s) 413, 775
Hpy166II GTNNAC 2 cut(s) 246, 630
Hpy188I TCNGA 7 cut(s) 26, 142, 160, 270, 313, 652, 718
Hpy188III TCNNGA 2 cut(s) 80, 152
Hpy8I GTNNAC 2 cut(s) 246, 630
Hpy99I CGWCG 5 cut(s) 108, 197, 211, 266, 401
HpyAV CCTTC 2 cut(s) 367, 448
HpyCH4III ACNGT 4 cut(s) 211, 281, 346, 771
HpyCH4IV ACGT 4 cut(s) 396, 593, 656, 722
HpyCH4V TGCA 3 cut(s) 329, 434, 448
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 419, 512, 571, 580
HpyF3I CTNAG 2 cut(s) 240, 269
HpySE526I ACGT 4 cut(s) 396, 593, 656, 722
Hsp92I GRCGYC 3 cut(s) 103, 261, 408
Hsp92II CATG 2 cut(s) 116, 466
KspAI GTTAAC 1 cut(s) 630
KspI CCGCGG 2 cut(s) 228, 414
Kzo9I GATC 3 cut(s) 82, 91, 216
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 7 cut(s) 55, 122, 129, 202, 364, 661, 735
Lsp1109I GCAGC 2 cut(s) 341, 750
LweI GCATC 2 cut(s) 316, 431
MaeI CTAG 3 cut(s) 36, 507, 528
MaeII ACGT 4 cut(s) 396, 593, 656, 722
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 84, 93, 218
MbiI CCGCTC 2 cut(s) 664, 733
MboI GATC 3 cut(s) 82, 91, 216
MboII GAAGA 6 cut(s) 59, 155, 391, 580, 610, 655
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 593
MmeI TCCRAC 4 cut(s) 33, 49, 675, 696
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 2 cut(s) 393, 629
MspA1I CMGCKG 3 cut(s) 227, 332, 413
MspR9I CCNGG 4 cut(s) 427, 754, 777, 778
MvaI CCWGG 1 cut(s) 427
MvnI CGCG 3 cut(s) 227, 362, 413
MwoI GCNNNNNNNGC 5 cut(s) 416, 419, 512, 571, 580
NciI CCSGG 3 cut(s) 754, 777, 778
NcoI CCATGG 2 cut(s) 112, 462
NdeII GATC 3 cut(s) 82, 91, 216
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 2 cut(s) 116, 466
NlaIV GGNNCC 4 cut(s) 118, 366, 624, 638
PceI AGGCCT 2 cut(s) 238, 430
PciSI GCTCTTC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 599
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 6 cut(s) 21, 155, 287, 314, 458, 510
Pfl23II CGTACG 1 cut(s) 318
PflFI GACNNNGTC 1 cut(s) 754
PinAI ACCGGT 1 cut(s) 496
PmaCI CACGTG 2 cut(s) 594, 657
PmlI CACGTG 2 cut(s) 594, 657
Ppu21I YACGTR 2 cut(s) 594, 657
Psp6I CCWGG 1 cut(s) 425
PspCI CACGTG 2 cut(s) 594, 657
PspGI CCWGG 1 cut(s) 425
PspLI CGTACG 1 cut(s) 318
PspN4I GGNNCC 4 cut(s) 118, 366, 624, 638
PspPI GGNCC 1 cut(s) 673
PsuI RGATCY 1 cut(s) 216
PsyI GACNNNGTC 1 cut(s) 754
RsaI GTAC 3 cut(s) 245, 278, 320
RsaNI GTAC 3 cut(s) 244, 277, 319
SacII CCGCGG 2 cut(s) 228, 414
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 393, 629
Sau3AI GATC 3 cut(s) 82, 91, 216
Sau96I GGNCC 1 cut(s) 673
ScrFI CCNGG 4 cut(s) 427, 754, 777, 778
SduI GDGCHC 1 cut(s) 593
SfaNI GCATC 2 cut(s) 316, 431
Sfr303I CCGCGG 2 cut(s) 228, 414
SgrAI CRCCGGYG 2 cut(s) 99, 760
SgrBI CCGCGG 2 cut(s) 228, 414
SinI GGWCC 1 cut(s) 673
SmaI CCCGGG 1 cut(s) 778
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SseBI AGGCCT 2 cut(s) 238, 430
SspMI CTAG 3 cut(s) 36, 507, 528
StuI AGGCCT 2 cut(s) 238, 430
StyD4I CCNGG 4 cut(s) 425, 752, 775, 776
StyI CCWWGG 2 cut(s) 112, 462
TaaI ACNGT 4 cut(s) 211, 281, 346, 771
TaiI ACGT 4 cut(s) 399, 596, 659, 725
TaqI TCGA 4 cut(s) 45, 153, 206, 560
TatI WGTACW 1 cut(s) 243
TauI GCSGC 9 cut(s) 175, 178, 227, 335, 413, 416, 419, 422, 667
TfiI GAWTC 6 cut(s) 21, 155, 287, 314, 458, 510
Tru1I TTAA 2 cut(s) 393, 629
Tru9I TTAA 2 cut(s) 393, 629
TseI GCWGC 2 cut(s) 329, 738
TspDTI ATGAA 1 cut(s) 722
TspGWI ACGGA 3 cut(s) 336, 451, 623
TspMI CCCGGG 1 cut(s) 776
Tth111I GACNNNGTC 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 673
XagI CCTNNNNNAGG 1 cut(s) 537
XmaI CCCGGG 1 cut(s) 776
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 3 cut(s) 36, 507, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.