Rmu_sc0007948.1_g000015

Domain of unknown function (DUF4408)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007948.1
OG0012843
Physical Location & Seq
Forward (+)
72489 .. 73589
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007948.1_g000015.1.cds

Sequence Viewer

Length: 913 bp
atgtcgaagagttggagcaacaactggttactctccctcaagatcgtgctgatctccaccggcgtcgtctccatggccgtcgcactgaagctctcggttccgatggccgcggacctcgtcgcctcgcaagtgccttctctatggagctctctgctctcttggctcgcacctccttacctctacatcctcatcaactgcatcatcatcagcatcgtcgcctcctccaagctccataatccaaaatccgaagacaatcacgattccgaaactgttccgccgccgccggaggtggtagccgtcgctccgttatcgacggtggagatccccgccgcggaagtgaggcctgagtacacatcctacaacggcgtcgctctgagcgagtacggttacgattccaatgtgtcgccggaggtttccgattcgtacggagatgcagcggcggttgagaccgttgaggatttgaacgcggagccggagaaggagaagagcgaggttcttaacgtcggtgatgacgccgccgccgcggcatccaggcctgcacggagtggcttgcagaggaaggattccatggagttttggttgaatgagaaccagaggccaccggtttctgctagattccctcacagaaaagctagccctgaaggtaaacgacttgtcgtttttgctagggaggtcgttgggagtgtcgaagccgaagaggcacgacacgctggagagcacgtggaagacgataacggacggccggtcggtgccgttaacgaggcacttgaagaagtccgacacgtgggagcggcgaatggaccagaacacccctcctgcgaacaacaggacgatgaacaagtcggagacgttccacgagcggagcagcacgactgcgaccgggtcgccggtgagacagtcgcccgggggacgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4408 DUF761

Protein Analysis

304

Amino Acids

32.75

Weight (kDa)

4.65

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012843)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54300
fragaria_vesca FvH4_3g20920
malus_domestica MD03G1219300.v1.1 MD11G1237400.v1.1
prunus_persica Prupe.4G189800_v2.0.a1
pyrus_communis pycom03g16840 pycom11g20870
rosa_chinensis RchiOBHm_Chr5g0035351
rosa_laevigata RLG00000033619
rosa_multiflora Rmu_sc0007948.1_g000015 Rmu_sc0032746.1_g000001
rosa_roxburghii Rroxscaffold_1G00045050
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244500 Rh5BG244000 Rh5CG275800 Rh5DG253000
rosa_wichuraiana Rw5G022330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 749
AccBSI CCGCTC 2 cut(s) 791, 860
AccII CGCG 4 cut(s) 110, 332, 467, 524
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 3 cut(s) 75, 105, 740
AcuI CTGAAG 2 cut(s) 107, 660
AcvI CACGTG 2 cut(s) 721, 784
AcyI GRCGYC 3 cut(s) 63, 366, 513
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 3 cut(s) 350, 383, 425
AfiI CCNNNNNNNGG 3 cut(s) 331, 784, 910
AflIII ACRYGT 1 cut(s) 781
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 3 cut(s) 463, 583, 770
AhdI GACNNNNNGTC 1 cut(s) 743
AjnI CCWGG 1 cut(s) 530
AluBI AGCT 4 cut(s) 91, 147, 229, 632
AluI AGCT 4 cut(s) 91, 147, 229, 632
Alw21I GWGCWC 2 cut(s) 149, 720
Alw26I GTCTC 4 cut(s) 73, 440, 840, 887
AlwI GGATC 1 cut(s) 316
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 6 cut(s) 75, 105, 341, 533, 596, 740
ApeKI GCWGC 2 cut(s) 434, 865
AsiGI ACCGGT 1 cut(s) 601
Asp700I GAANNNNTTC 1 cut(s) 270
AspS9I GGNCC 2 cut(s) 112, 800
AsuC2I CCSGG 3 cut(s) 881, 904, 905
AsuHPI GGTGA 2 cut(s) 518, 902
AsuNHI GCTAGC 1 cut(s) 632
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 2 cut(s) 112, 800
BanI GGYRCC 1 cut(s) 749
BanII GRGCYC 1 cut(s) 149
BauI CACGAG 1 cut(s) 855
BbrPI CACGTG 2 cut(s) 721, 784
BbsI GAAGAC 2 cut(s) 255, 732
Bbv12I GWGCWC 2 cut(s) 149, 720
BbvI GCAGC 2 cut(s) 446, 877
BccI CCATC 1 cut(s) 97
BceAI ACGGC 5 cut(s) 62, 281, 379, 737, 755
BciT130I CCWGG 1 cut(s) 532
BcnI CCSGG 3 cut(s) 881, 904, 905
BcoDI GTCTC 4 cut(s) 73, 440, 840, 887
BfaI CTAG 3 cut(s) 612, 633, 666
BglI GCCNNNNNGGC 2 cut(s) 524, 698
Bme1390I CCNGG 4 cut(s) 532, 881, 904, 905
Bme18I GGWCC 2 cut(s) 112, 800
BmeRI GACNNNNNGTC 1 cut(s) 743
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 112, 800
BmiI GGNNCC 3 cut(s) 99, 471, 751
BmrFI CCNGG 4 cut(s) 532, 881, 904, 905
BmsI GCATC 4 cut(s) 207, 219, 421, 536
BmtI GCTAGC 1 cut(s) 636
BpiI GAAGAC 2 cut(s) 255, 732
BpmI CTGGAG 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 3 cut(s) 881, 904, 905
BsaAI YACGTR 2 cut(s) 721, 784
BsaHI GRCGYC 3 cut(s) 63, 366, 513
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 7 cut(s) 72, 108, 330, 522, 567, 903, 904
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 705, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 331, 784, 910
Bse118I RCCGGY 4 cut(s) 59, 601, 742, 887
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 7 cut(s) 72, 108, 330, 522, 567, 903, 904
BseGI GGATG 3 cut(s) 183, 353, 527
BseLI CCNNNNNNNGG 3 cut(s) 331, 784, 910
BseMII CTCAG 2 cut(s) 336, 365
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 211
BseX3I CGGCCG 1 cut(s) 740
BseXI GCAGC 2 cut(s) 446, 877
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 4 cut(s) 110, 332, 467, 524
Bsh1285I CGRYCG 3 cut(s) 743, 747, 880
BshFI GGCC 6 cut(s) 77, 107, 343, 535, 598, 742
BshNI GGYRCC 1 cut(s) 749
BshTI ACCGGT 1 cut(s) 601
BsiEI CGRYCG 3 cut(s) 743, 747, 880
BsiHKAI GWGCWC 2 cut(s) 149, 720
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 9 cut(s) 60, 284, 407, 473, 602, 743, 880, 888, 904
BsiWI CGTACG 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 331, 784, 910
BsmAI GTCTC 4 cut(s) 73, 440, 840, 887
BsmBI CGTCTC 2 cut(s) 73, 840
BsnI GGCC 6 cut(s) 77, 107, 343, 535, 598, 742
Bso31I GGTCTC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 149, 720
Bsp143I GATC 3 cut(s) 42, 51, 321
Bsp19I CCATGG 2 cut(s) 72, 567
BspANI GGCC 6 cut(s) 77, 107, 343, 535, 598, 742
BspCNI CTCAG 2 cut(s) 337, 366
BspFNI CGCG 4 cut(s) 110, 332, 467, 524
BspLI GGNNCC 3 cut(s) 99, 471, 751
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 440
BsrBI CCGCTC 2 cut(s) 791, 860
BsrFI RCCGGY 4 cut(s) 59, 601, 742, 887
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 4 cut(s) 59, 601, 742, 887
BssECI CCNNGG 7 cut(s) 72, 108, 330, 522, 567, 903, 904
BssMI GATC 3 cut(s) 42, 51, 321
BssNI GRCGYC 3 cut(s) 63, 366, 513
BssSI CACGAG 1 cut(s) 855
BssT1I CCWWGG 2 cut(s) 72, 567
Bst2BI CACGAG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 5 cut(s) 271, 316, 386, 451, 898
Bst6I CTCTTC 3 cut(s) 2, 479, 690
BstACI GRCGYC 3 cut(s) 63, 366, 513
BstBAI YACGTR 2 cut(s) 721, 784
BstC8I GCNNGC 4 cut(s) 165, 537, 551, 634
BstDEI CTNAG 2 cut(s) 345, 374
BstDSI CCRYGG 5 cut(s) 72, 108, 330, 522, 567
BstF5I GGATG 3 cut(s) 183, 353, 527
BstFNI CGCG 4 cut(s) 110, 332, 467, 524
BstKTI GATC 3 cut(s) 45, 54, 324
BstMAI GTCTC 4 cut(s) 73, 440, 840, 887
BstMBI GATC 3 cut(s) 42, 51, 321
BstMCI CGRYCG 3 cut(s) 743, 747, 880
BstMWI GCNNNNNNNGC 5 cut(s) 160, 521, 524, 698, 707
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 4 cut(s) 530, 879, 902, 903
BstUI CGCG 4 cut(s) 110, 332, 467, 524
BstV1I GCAGC 2 cut(s) 446, 877
BstV2I GAAGAC 2 cut(s) 255, 732
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BstZI CGGCCG 1 cut(s) 740
BsuRI GGCC 6 cut(s) 77, 107, 343, 535, 598, 742
BtgI CCRYGG 5 cut(s) 72, 108, 330, 522, 567
BtsCI GGATG 3 cut(s) 183, 353, 527
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 4 cut(s) 165, 537, 551, 634
Cfr10I RCCGGY 4 cut(s) 59, 601, 742, 887
Cfr13I GGNCC 2 cut(s) 112, 800
Cfr42I CCGCGG 3 cut(s) 111, 333, 525
Cfr9I CCCGGG 1 cut(s) 903
CseI GACGC 3 cut(s) 52, 355, 521
Csp6I GTAC 3 cut(s) 349, 382, 424
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 2 cut(s) 73, 568
CviQI GTAC 3 cut(s) 349, 382, 424
DdeI CTNAG 2 cut(s) 345, 374
DpnI GATC 3 cut(s) 44, 53, 323
DpnII GATC 3 cut(s) 42, 51, 321
DraIII CACNNNGTG 1 cut(s) 545
DriI GACNNNNNGTC 1 cut(s) 743
EaeI YGGCCR 3 cut(s) 75, 105, 740
EagI CGGCCG 1 cut(s) 740
Eam1104I CTCTTC 3 cut(s) 2, 479, 690
Eam1105I GACNNNNNGTC 1 cut(s) 743
EarI CTCTTC 3 cut(s) 2, 479, 690
EciI GGCGGA 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 147
EclXI CGGCCG 1 cut(s) 740
Eco130I CCWWGG 2 cut(s) 72, 567
Eco147I AGGCCT 2 cut(s) 343, 535
Eco24I GRGCYC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 440
Eco47I GGWCC 2 cut(s) 112, 800
Eco52I CGGCCG 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 107, 660
Eco72I CACGTG 2 cut(s) 721, 784
Eco88I CYCGRG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 2 cut(s) 72, 567
EcoT38I GRGCYC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 72, 567
Esp3I CGTCTC 2 cut(s) 73, 840
FaeI CATG 2 cut(s) 76, 571
FaiI YATR 4 cut(s) 74, 142, 234, 569
FatI CATG 2 cut(s) 72, 567
FauI CCCGC 1 cut(s) 334
FokI GGATG 3 cut(s) 170, 340, 514
FriOI GRGCYC 1 cut(s) 149
FspBI CTAG 3 cut(s) 612, 633, 666
GsuI CTGGAG 1 cut(s) 732
HaeIII GGCC 6 cut(s) 77, 107, 343, 535, 598, 742
HapII CCGG 9 cut(s) 60, 284, 407, 473, 602, 743, 880, 888, 904
HgaI GACGC 3 cut(s) 52, 355, 521
Hin1I GRCGYC 3 cut(s) 63, 366, 513
Hin1II CATG 2 cut(s) 76, 571
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 5 cut(s) 260, 392, 419, 563, 615
HpaI GTTAAC 1 cut(s) 757
HpaII CCGG 9 cut(s) 60, 284, 407, 473, 602, 743, 880, 888, 904
HphI GGTGA 2 cut(s) 518, 902
Hpy166II GTNNAC 3 cut(s) 351, 647, 757
Hpy188I TCNGA 7 cut(s) 102, 247, 265, 375, 418, 779, 845
Hpy188III TCNNGA 2 cut(s) 40, 257
Hpy8I GTNNAC 3 cut(s) 351, 647, 757
Hpy99I CGWCG 8 cut(s) 68, 83, 122, 218, 302, 316, 371, 506
HpyAV CCTTC 4 cut(s) 144, 472, 553, 635
HpyCH4III ACNGT 5 cut(s) 271, 316, 386, 451, 898
HpyCH4IV ACGT 4 cut(s) 501, 720, 783, 849
HpyCH4V TGCA 4 cut(s) 198, 434, 539, 553
HpyF10VI GCNNNNNNNGC 5 cut(s) 160, 521, 524, 698, 707
HpyF3I CTNAG 2 cut(s) 345, 374
HpySE526I ACGT 4 cut(s) 501, 720, 783, 849
Hsp92I GRCGYC 3 cut(s) 63, 366, 513
Hsp92II CATG 2 cut(s) 76, 571
KspAI GTTAAC 1 cut(s) 757
KspI CCGCGG 3 cut(s) 111, 333, 525
Kzo9I GATC 3 cut(s) 42, 51, 321
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 7 cut(s) 15, 144, 234, 307, 469, 788, 862
Lsp1109I GCAGC 2 cut(s) 446, 877
LweI GCATC 4 cut(s) 207, 219, 421, 536
MaeI CTAG 3 cut(s) 612, 633, 666
MaeII ACGT 4 cut(s) 501, 720, 783, 849
MaeIII GTNAC 2 cut(s) 27, 386
MalI GATC 3 cut(s) 44, 53, 323
MbiI CCGCTC 2 cut(s) 791, 860
MboI GATC 3 cut(s) 42, 51, 321
MboII GAAGA 6 cut(s) 19, 260, 496, 707, 737, 782
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 2 cut(s) 149, 720
MmeI TCCRAC 2 cut(s) 802, 823
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 2 cut(s) 498, 756
MspA1I CMGCKG 4 cut(s) 110, 332, 437, 524
MspI CCGG 9 cut(s) 60, 284, 407, 473, 602, 743, 880, 888, 904
MspR9I CCNGG 4 cut(s) 532, 881, 904, 905
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 4 cut(s) 110, 332, 467, 524
MwoI GCNNNNNNNGC 5 cut(s) 160, 521, 524, 698, 707
NciI CCSGG 3 cut(s) 881, 904, 905
NcoI CCATGG 2 cut(s) 72, 567
NdeII GATC 3 cut(s) 42, 51, 321
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 2 cut(s) 76, 571
NlaIV GGNNCC 3 cut(s) 99, 471, 751
PceI AGGCCT 2 cut(s) 343, 535
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 375, 726
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 5 cut(s) 260, 392, 419, 563, 615
Pfl23II CGTACG 1 cut(s) 423
PflFI GACNNNGTC 2 cut(s) 116, 881
PinAI ACCGGT 1 cut(s) 601
PmaCI CACGTG 2 cut(s) 721, 784
PmlI CACGTG 2 cut(s) 721, 784
Ppu21I YACGTR 2 cut(s) 721, 784
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 530
PspCI CACGTG 2 cut(s) 721, 784
PspGI CCWGG 1 cut(s) 530
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 3 cut(s) 99, 471, 751
PspPI GGNCC 2 cut(s) 112, 800
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 2 cut(s) 116, 881
RsaI GTAC 3 cut(s) 350, 383, 425
RsaNI GTAC 3 cut(s) 349, 382, 424
SacI GAGCTC 1 cut(s) 149
SacII CCGCGG 3 cut(s) 111, 333, 525
SapI GCTCTTC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 498, 756
Sau3AI GATC 3 cut(s) 42, 51, 321
Sau96I GGNCC 2 cut(s) 112, 800
ScrFI CCNGG 4 cut(s) 532, 881, 904, 905
SduI GDGCHC 2 cut(s) 149, 720
SfaNI GCATC 4 cut(s) 207, 219, 421, 536
Sfr303I CCGCGG 3 cut(s) 111, 333, 525
SgrAI CRCCGGYG 2 cut(s) 59, 887
SgrBI CCGCGG 3 cut(s) 111, 333, 525
SinI GGWCC 2 cut(s) 112, 800
SmaI CCCGGG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SseBI AGGCCT 2 cut(s) 343, 535
SspMI CTAG 3 cut(s) 612, 633, 666
SstI GAGCTC 1 cut(s) 149
StuI AGGCCT 2 cut(s) 343, 535
StyD4I CCNGG 4 cut(s) 530, 879, 902, 903
StyI CCWWGG 2 cut(s) 72, 567
TaaI ACNGT 5 cut(s) 271, 316, 386, 451, 898
TaiI ACGT 4 cut(s) 504, 723, 786, 852
TaqI TCGA 3 cut(s) 5, 311, 687
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 5 cut(s) 260, 392, 419, 563, 615
Tru1I TTAA 2 cut(s) 498, 756
Tru9I TTAA 2 cut(s) 498, 756
TscAI CASTG 1 cut(s) 90
TseI GCWGC 2 cut(s) 434, 865
TspDTI ATGAA 1 cut(s) 849
TspGWI ACGGA 4 cut(s) 294, 441, 556, 750
TspMI CCCGGG 1 cut(s) 903
TspRI CASTG 1 cut(s) 90
Tth111I GACNNNGTC 2 cut(s) 116, 881
VpaK11BI GGWCC 2 cut(s) 112, 800
XmaI CCCGGG 1 cut(s) 903
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 3 cut(s) 612, 633, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.