pycom11g23370

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014274
Physical Location & Seq
Forward (+)
26381491 .. 26384716
3226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGGTTGTGCTGGATCGTCACAGACCAAAGGAGACGGGGCTTTGAAGAAGATTAGGAAGCCAAAACCCTGGAAGCATCCTCAGCCGTTAACAAAGTCTCAACTCTTGCAGATGCGTGAAGAGTTTTGGGACACTGCTCCTCACTATGGAGGAAGGAAAGAGATTTGGGATGCACTTCGAGCTGCTTCTGAGGCAGATCTAAGCCTTGCACAAGCGATTGTGGACAGTGCTGGGGTCATTGTTCAAAGTGCTGATTTGACAATTTGCTATGACGAAAGAGGTGCAAAATATGAACTACCCAAGTATGTTTTGAGCGAGCCAACCAACTTAATTCAAGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBD

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

6.72

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBD PF16455 16 - 113 2.8e-38 Ubiquitin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16960 AT1G53400 AT5G45740
fragaria_vesca FvH4_3g18130
malus_domestica MD11G1265800.v1.1
prunus_persica Prupe.4G160100_v2.0.a1
pyrus_communis pycom03g19390 pycom11g23370
rosa_chinensis RchiOBHm_Chr5g0030541
rosa_laevigata RLG00000033224
rosa_multiflora Rmu_sc0013101.1_g000004
rosa_roxburghii Rroxscaffold_1G00049770
rosa_rugosa Rorug05G0118300
rosa_samantha Rh5BG209700 Rh5CG233100 Rh5DG214200
rosa_wichuraiana Rw5G019240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 3 cut(s) 46, 245, 335
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 27, 102
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 169
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 27, 102
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 3 cut(s) 85, 102, 160
Bpu10I CCTNAGC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 76, 175
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 95, 180
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 230
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 27, 102
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 14, 196
BspCNI CTCAG 2 cut(s) 94, 181
BspPI GGATC 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 2 cut(s) 14, 196
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 3 cut(s) 81, 189, 200
BstF5I GGATG 2 cut(s) 76, 175
BstKTI GATC 2 cut(s) 17, 199
BstMAI GTCTC 2 cut(s) 27, 102
BstMBI GATC 2 cut(s) 14, 196
BstMWI GCNNNNNNNGC 3 cut(s) 82, 179, 191
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 69
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 2 cut(s) 76, 175
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 232
Cac8I GCNNGC 1 cut(s) 317
CviJI RGCY 6 cut(s) 41, 61, 85, 182, 204, 319
CviKI_1 RGCY 6 cut(s) 41, 61, 85, 182, 204, 319
DdeI CTNAG 3 cut(s) 81, 189, 200
DpnI GATC 2 cut(s) 16, 198
DpnII GATC 2 cut(s) 14, 196
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 27
FaiI YATR 4 cut(s) 147, 270, 291, 306
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 63, 182
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HpaI GTTAAC 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 90, 223
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 2 cut(s) 90, 223
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 4 cut(s) 109, 173, 209, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 179, 191
HpyF3I CTNAG 3 cut(s) 81, 189, 200
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 14, 196
LmnI GCTCC 1 cut(s) 142
LpnPI CCDG 3 cut(s) 55, 82, 216
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 3 cut(s) 85, 102, 160
MaeIII GTNAC 1 cut(s) 18
MalI GATC 2 cut(s) 16, 198
MboI GATC 2 cut(s) 14, 196
MboII GAAGA 3 cut(s) 58, 61, 131
MflI RGATCY 1 cut(s) 196
MluCI AATT 2 cut(s) 261, 330
MnlI CCTC 5 cut(s) 90, 143, 150, 184, 272
MseI TTAA 2 cut(s) 89, 329
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 3 cut(s) 82, 179, 191
NdeII GATC 2 cut(s) 14, 196
NmuCI GTSAC 1 cut(s) 18
PkrI GCNGC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 68
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 196
SaqAI TTAA 2 cut(s) 89, 329
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 14, 196
ScrFI CCNGG 1 cut(s) 70
SetI ASST 2 cut(s) 184, 283
SfaNI GCATC 3 cut(s) 85, 102, 160
Sse9I AATT 2 cut(s) 261, 330
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 178
TasI AATT 2 cut(s) 261, 330
Tru1I TTAA 2 cut(s) 89, 329
Tru9I TTAA 2 cut(s) 89, 329
TscAI CASTG 2 cut(s) 139, 232
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 2 cut(s) 139, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.