Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Reverse (-)

26829977 .. 26833078

Gene Structure 3102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCCCTACTCTCGCTCGCAGCTTCATCTTCTTCTTCCTTCATGCTTTCATCCTCCGCCACTTGCTCTTCTTCCCCAAAACCCCCATTCTCCTCCTCCTCCTCTAAACCCCCCATTAAAACCCCATTTGTTGGGTTCTCGGTGGCGCCACCACAGAAGCTCTGGATTCCCTCCACCACCGATCTCAGCTTCAACAATGGAGGTTCGCCGCGTCGGAGCTTCGAGGTCTTCAGCAGTAAAACTAAGGACTTCGTTCGGGTCCCTTTGGATCAGCGATGGATGTTCGAGGACTACGAAGTCGACGGCCCTGACATTTGGAATAATACGTGGTATCCAAAAGCTGCAGACCATGTGAATACTGACAAGCCATGGTTTATCGTTGATGCCACGGACAAGATTCTTGGACGAATGGCATCCACAATTGCCATTTACATCCGTGGGAAGAATTTGGCGACCTACACCCCTAGTGTGGACATGGGAGCATTTGTCATTGTGGTAAATGCTGAAAAGGTTGCCGTATCTGGCAAGAAAAGGAACCAAAAACTCTACAGGAGGCATTCTGGACGACCAGGTGGTATGACAGTGGAAACGTTTGACCAGTTACAGCAGAGAATCCCAGAGAGGATTATTGAACATGCTGTTCGTGGCATGCTTCCGAAAGGGAGGCTCGGGAGAGCGCTTTTCAACCACCTAAAGGTGTACAAGGGGCCAGATCATCCCCATGAAGCTCAGATGCCAGTGGAGCTGCCGATTAAGGACAAAAGAATACAGAAACAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

261

Amino Acids

29.11

Weight (kDa)

9.9

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	123 - 240	5.7e-44	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	57, 209
AclI	AACGTT	1 cut(s)	590
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	701
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	131, 469, 694
AgsI	TTSAA	3 cut(s)	193, 632, 685
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	7 cut(s)	23, 160, 189, 219, 341, 728, 745
AluI	AGCT	7 cut(s)	23, 160, 189, 219, 341, 728, 745
AlwI	GGATC	1 cut(s)	276
Ama87I	CYCGRG	1 cut(s)	668
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	2 cut(s)	304, 707
ApeKI	GCWGC	3 cut(s)	20, 341, 745
ApoI	RAATTY	1 cut(s)	445
AspLEI	GCGC	2 cut(s)	148, 679
AspS9I	GGNCC	3 cut(s)	259, 305, 707
AvaI	CYCGRG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	32, 328, 732
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	2 cut(s)	319, 500
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	2 cut(s)	342, 547
BfoI	RGCGCY	2 cut(s)	149, 680
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	4 cut(s)	21, 209, 342, 746
BlsI	GCNGC	4 cut(s)	22, 210, 343, 747
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	259, 305, 707
BmiI	GGNNCC	5 cut(s)	147, 260, 261, 536, 708
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	373, 422, 723
BpiI	GAAGAC	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	368, 387, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 469, 694
Bse1I	ACTGG	2 cut(s)	598, 737
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	368, 387, 436
BseGI	GGATG	5 cut(s)	50, 285, 413, 432, 715
BseLI	CCNNNNNNNGG	3 cut(s)	131, 469, 694
BseMII	CTCAG	2 cut(s)	199, 743
BseNI	ACTGG	2 cut(s)	598, 737
BseRI	GAGGAG	4 cut(s)	82, 85, 88, 91
BseXI	GCAGC	3 cut(s)	32, 328, 732
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	306, 709
BshNI	GGYRCC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	668
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	131, 469, 694
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	306, 709
BsoBI	CYCGRG	1 cut(s)	668
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	181, 268, 712
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	2 cut(s)	57, 209
BspANI	GGCC	2 cut(s)	306, 709
BspCNI	CTCAG	2 cut(s)	198, 742
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	5 cut(s)	147, 260, 261, 536, 708
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	598, 737
BssECI	CCNNGG	3 cut(s)	368, 387, 436
BssMI	GATC	3 cut(s)	181, 268, 712
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	1 cut(s)	73
BstACI	GRCGYC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	699
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	18, 650
BstDEI	CTNAG	3 cut(s)	185, 243, 729
BstDSI	CCRYGG	3 cut(s)	368, 387, 436
BstF5I	GGATG	5 cut(s)	50, 285, 413, 432, 715
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	2 cut(s)	149, 680
BstHHI	GCGC	2 cut(s)	148, 679
BstKTI	GATC	3 cut(s)	184, 271, 715
BstMBI	GATC	3 cut(s)	181, 268, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	742
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	2 cut(s)	638, 652
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	2 cut(s)	342, 547
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	32, 328, 732
BstV2I	GAAGAC	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	306, 709
BtgI	CCRYGG	3 cut(s)	368, 387, 436
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	5 cut(s)	50, 285, 413, 432, 715
BtsIMutI	CAGTG	2 cut(s)	588, 744
Cac8I	GCNNGC	2 cut(s)	18, 650
CfoI	GCGC	2 cut(s)	148, 679
Cfr13I	GGNCC	3 cut(s)	259, 305, 707
CseI	GACGC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	7 cut(s)	43, 350, 369, 475, 635, 649, 722
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	3 cut(s)	185, 243, 729
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	3 cut(s)	183, 270, 714
DpnII	GATC	3 cut(s)	181, 268, 712
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	214
Eco88I	CYCGRG	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	368
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	368
FaeI	CATG	7 cut(s)	46, 353, 372, 478, 638, 652, 725
FaiI	YATR	8 cut(s)	44, 351, 370, 476, 578, 636, 650, 723
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	7 cut(s)	42, 349, 368, 474, 634, 648, 721
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	21, 209, 342, 746
FokI	GGATG	5 cut(s)	37, 292, 400, 419, 702
Fsp4HI	GCNGC	4 cut(s)	21, 209, 342, 746
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	2 cut(s)	147, 678
GluI	GCNGC	4 cut(s)	21, 209, 342, 746
HaeII	RGCGCY	2 cut(s)	149, 680
HaeIII	GGCC	2 cut(s)	306, 709
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	148, 679
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	7 cut(s)	46, 353, 372, 478, 638, 652, 725
Hin6I	GCGC	2 cut(s)	146, 677
HinP1I	GCGC	2 cut(s)	146, 677
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	3 cut(s)	166, 397, 612
Hpy166II	GTNNAC	3 cut(s)	301, 472, 700
Hpy188I	TCNGA	3 cut(s)	216, 657, 732
Hpy188III	TCNNGA	3 cut(s)	163, 561, 670
Hpy8I	GTNNAC	3 cut(s)	301, 472, 700
Hpy99I	CGWCG	2 cut(s)	216, 305
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	2 cut(s)	326, 590
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	742
HpyF3I	CTNAG	3 cut(s)	185, 243, 729
HpySE526I	ACGT	2 cut(s)	326, 590
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	7 cut(s)	46, 353, 372, 478, 638, 652, 725
HspAI	GCGC	2 cut(s)	146, 677
KasI	GGCGCC	1 cut(s)	145
KflI	GGGWCCC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	181, 268, 712
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	216, 479, 742
Lsp1109I	GCAGC	3 cut(s)	32, 328, 732
LweI	GCATC	3 cut(s)	373, 422, 723
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	326, 590
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	3 cut(s)	183, 270, 714
MboI	GATC	3 cut(s)	181, 268, 712
MboII	GAAGA	7 cut(s)	21, 24, 27, 60, 63, 220, 454
MfeI	CAATTG	1 cut(s)	420
MluCI	AATT	2 cut(s)	420, 445
Mly113I	GGCGCC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	194
MseI	TTAA	2 cut(s)	117, 753
MslI	CAYNNNNRTG	1 cut(s)	720
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	742
NarI	GGCGCC	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	181, 268, 712
NlaIII	CATG	7 cut(s)	46, 353, 372, 478, 638, 652, 725
NlaIV	GGNNCC	5 cut(s)	147, 260, 261, 536, 708
NspI	RCATGY	2 cut(s)	638, 652
PaeI	GCATGC	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	166, 397, 612
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	22, 210, 343, 747
PluTI	GGCGCC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	327
PpuMI	RGGWCCY	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	590
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	5 cut(s)	147, 260, 261, 536, 708
PspPI	GGNCC	3 cut(s)	259, 305, 707
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	346
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
RseI	CAYNNNNRTG	1 cut(s)	720
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	117, 753
SatI	GCNGC	4 cut(s)	21, 209, 342, 746
Sau3AI	GATC	3 cut(s)	181, 268, 712
Sau96I	GGNCC	3 cut(s)	259, 305, 707
ScrFI	CCNGG	1 cut(s)	570
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	373, 422, 723
SfcI	CTRYAG	2 cut(s)	342, 547
SfoI	GGCGCC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	1 cut(s)	720
SphI	GCATGC	1 cut(s)	652
Sse9I	AATT	2 cut(s)	420, 445
SsiI	CCGC	2 cut(s)	57, 209
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	2 cut(s)	329, 593
TaqI	TCGA	3 cut(s)	222, 285, 300
TasI	AATT	2 cut(s)	420, 445
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	1 cut(s)	211
TfiI	GAWTC	3 cut(s)	166, 397, 612
Tru1I	TTAA	2 cut(s)	117, 753
Tru9I	TTAA	2 cut(s)	117, 753
TscAI	CASTG	2 cut(s)	588, 744
TseI	GCWGC	3 cut(s)	20, 341, 745
TspDTI	ATGAA	4 cut(s)	15, 31, 39, 738
TspGWI	ACGGA	2 cut(s)	404, 425
TspRI	CASTG	2 cut(s)	588, 744
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	2 cut(s)	638, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.