pycom11g24490

histone h2a

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010719
Physical Location & Seq
Forward (+)
27411120 .. 27413730
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGCAAATATTATTCTTATTTGTCTATGTTGTTGTCCCCTGTTCCCTCTTAAATTTGGCTTTCCTCCTCTCTCTCTGTCTCTACAGTTCCCTTCCGTCTTCGAGCTTCCCAGGAACTCCTCAGGCAGAAATGGCGGGCAAAGGCGGGAAGGGGCTTATTGCAGCGAAAACCACAGCGGCTAACAAGGACAAAGAAAAGGAGAAGGACAAGAAGAGGCCTGTTTCTCGTTCGTCTCGCGCTGGTATCCAGTTTCCGGTGGGTCGAATTCATAGGCAGCTGAAACAGCGAATTGCTGCTCATGGGCGTGTTGGCGCCACTGCTGCTGTGTACTTGGCCTCAATCCTTGAGTACCTAACTGCTGAGGTTCTTGAGTTGGCCGGGAATGCTAGCAAGGATCTCAAGGTCAAGAGAATCACACCCAGGCATCTGCAACTAGCCATCAGGGGAGATGAGGAGCTGGACACTCTCATCAAGGGAACAATTGCTGGCGGTGGTGTCATCCCCCACATCCACAAGTCCCTCATCAACAAGACTTCCAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04217 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05322 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04217 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05322 map05418
Pfam Domains
Protein Families
EF-hand_7 Histone Histone_H2A_C

Protein Analysis

182

Amino Acids

19.54

Weight (kDa)

9.97

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 63 - 149 1e-21 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 151 - 180 2.4e-10 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010719)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38810 AT2G38810 AT2G38810 AT2G38810
fragaria_vesca FvH4_2g22780
malus_domestica MD03G1256100.v1.1 MD11G1276900.v1.1
prunus_persica Prupe.8G233200_v2.0.a1 Prupe.8G233200_v2.0.a1
pyrus_communis pycom11g24490
rosa_chinensis RchiOBHm_Chr6g0289701
rosa_laevigata RLG00000012274
rosa_multiflora Rmu_sc0005640.1_g000031
rosa_roxburghii Rroxscaffold_7G00177640 Rroxscaffold_7G00178130
rosa_rugosa Rorug06G0205800
rosa_samantha Rh6AG317500 Rh6BG325100 Rh6DG316400
rosa_wichuraiana Rw6G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 134, 144, 176, 489
AclWI GGATC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 2 cut(s) 52, 264
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 329, 350
AfiI CCNNNNNNNGG 1 cut(s) 253
AjnI CCWGG 2 cut(s) 109, 419
AluBI AGCT 3 cut(s) 105, 277, 457
AluI AGCT 3 cut(s) 105, 277, 457
Alw26I GTCTC 2 cut(s) 83, 237
AlwI GGATC 1 cut(s) 402
AoxI GGCC 3 cut(s) 215, 333, 375
ApeKI GCWGC 4 cut(s) 161, 274, 293, 320
ApoI RAATTY 2 cut(s) 52, 264
AspLEI GCGC 2 cut(s) 239, 314
AsuC2I CCSGG 1 cut(s) 379
AsuNHI GCTAGC 1 cut(s) 386
AxyI CCTNAGG 1 cut(s) 120
BanI GGYRCC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 90
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 4 cut(s) 173, 280, 286, 307
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 2 cut(s) 111, 421
BciVI GTATCC 1 cut(s) 254
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 2 cut(s) 83, 237
BfaI CTAG 2 cut(s) 387, 434
BfmI CTRYAG 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 315
BfuI GTATCC 1 cut(s) 254
BisI GCNGC 5 cut(s) 162, 177, 275, 294, 321
BlsI GCNGC 5 cut(s) 163, 178, 276, 295, 322
Bme1390I CCNGG 3 cut(s) 111, 379, 421
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 111, 379, 421
BmsI GCATC 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 3 cut(s) 365, 383, 389
BpuMI CCSGG 1 cut(s) 379
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 109, 419, 537
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 247
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 111, 421
BseDI CCNNGG 3 cut(s) 109, 419, 537
BseGI GGATG 2 cut(s) 498, 507
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 134, 351
BseNI ACTGG 1 cut(s) 247
BseRI GAGGAG 3 cut(s) 56, 108, 467
BseXI GCAGC 4 cut(s) 173, 280, 286, 307
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 217, 335, 377
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 254, 378
BslFI GGGAC 2 cut(s) 20, 502
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 83, 237
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 20, 502
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 217, 335, 377
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 4 cut(s) 134, 144, 176, 489
BspANI GGCC 3 cut(s) 217, 335, 377
BspCNI CTCAG 2 cut(s) 133, 352
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 109, 419, 537
BssMI GATC 1 cut(s) 394
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 111, 421
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 3 cut(s) 136, 388, 487
BstDEI CTNAG 2 cut(s) 120, 360
BstF5I GGATG 2 cut(s) 498, 507
BstFNI CGCG 1 cut(s) 237
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 2 cut(s) 239, 314
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 83, 237
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 4 cut(s) 131, 283, 320, 383
BstNI CCWGG 2 cut(s) 111, 421
BstSCI CCNGG 3 cut(s) 109, 377, 419
BstSFI CTRYAG 1 cut(s) 82
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 4 cut(s) 173, 280, 286, 307
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
Bsu36I CCTNAGG 1 cut(s) 120
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 3 cut(s) 217, 335, 377
BtsCI GGATG 2 cut(s) 498, 507
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 3 cut(s) 136, 388, 487
CfoI GCGC 2 cut(s) 239, 314
Csp6I GTAC 2 cut(s) 328, 349
CviAII CATG 1 cut(s) 299
CviQI GTAC 2 cut(s) 328, 349
DdeI CTNAG 2 cut(s) 120, 360
DinI GGCGCC 1 cut(s) 313
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 537
Eco147I AGGCCT 1 cut(s) 217
Eco81I CCTNAGG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 109, 419
EcoT14I CCWWGG 1 cut(s) 537
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 27, 270, 300
FaqI GGGAC 2 cut(s) 20, 502
FatI CATG 1 cut(s) 298
FauI CCCGC 2 cut(s) 127, 137
Fnu4HI GCNGC 5 cut(s) 162, 177, 275, 294, 321
FokI GGATG 2 cut(s) 485, 494
Fsp4HI GCNGC 5 cut(s) 162, 177, 275, 294, 321
FspBI CTAG 2 cut(s) 387, 434
GlaI GCGC 2 cut(s) 238, 313
GluI GCNGC 5 cut(s) 162, 177, 275, 294, 321
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 3 cut(s) 217, 335, 377
HapII CCGG 2 cut(s) 254, 378
HhaI GCGC 2 cut(s) 239, 314
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 2 cut(s) 237, 312
HinP1I GCGC 2 cut(s) 237, 312
HinfI GANTC 1 cut(s) 411
HpaII CCGG 2 cut(s) 254, 378
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 368, 406
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 3 cut(s) 101, 142, 196
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 4, 161, 430
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 283, 320, 383
HpyF3I CTNAG 2 cut(s) 120, 360
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 2 cut(s) 237, 312
KasI GGCGCC 1 cut(s) 311
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 454
Lsp1109I GCAGC 4 cut(s) 173, 280, 286, 307
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 387, 434
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 2 cut(s) 90, 223
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 1 cut(s) 394
MluCI AATT 4 cut(s) 52, 264, 288, 480
Mly113I GGCGCC 1 cut(s) 312
MnlI CCTC 9 cut(s) 56, 74, 77, 129, 207, 346, 355, 445, 530
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 176, 277
MspI CCGG 2 cut(s) 254, 378
MspR9I CCNGG 3 cut(s) 111, 379, 421
MunI CAATTG 1 cut(s) 480
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 2 cut(s) 111, 421
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 131, 283, 320, 383
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 379
NdeII GATC 1 cut(s) 394
NheI GCTAGC 1 cut(s) 386
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 217
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 1 cut(s) 411
PkrI GCNGC 5 cut(s) 163, 178, 276, 295, 322
PluTI GGCGCC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 109, 419
PspGI CCWGG 2 cut(s) 109, 419
PspN4I GGNNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 2 cut(s) 329, 350
RsaNI GTAC 2 cut(s) 328, 349
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 5 cut(s) 162, 177, 275, 294, 321
Sau3AI GATC 1 cut(s) 394
ScrFI CCNGG 3 cut(s) 111, 379, 421
SetI ASST 6 cut(s) 107, 279, 354, 366, 405, 459
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 82
SfoI GGCGCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 3 cut(s) 344, 368, 398
SmoI CTYRAG 3 cut(s) 344, 368, 398
Sse9I AATT 4 cut(s) 52, 264, 288, 480
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 4 cut(s) 134, 144, 176, 489
SspDI GGCGCC 1 cut(s) 311
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 387, 434
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 3 cut(s) 109, 377, 419
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 101, 262
TasI AATT 4 cut(s) 52, 264, 288, 480
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 411
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TscAI CASTG 1 cut(s) 322
TseI GCWGC 4 cut(s) 161, 274, 293, 320
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 322
XapI RAATTY 2 cut(s) 52, 264
XspI CTAG 2 cut(s) 387, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.