pycom11g25020

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010100
Physical Location & Seq
Forward (+)
27893767 .. 27894804
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
ATGTCTGAACAACTGATAGAAGGTCTCCCTGACGCTGTTGCCCTTAGGTGCCTTGCATGGGTTCCCTTCTATCTCCATCCCAAGTTGGAGCTTGTTTCTCGTTCCTGGCAAGCTGCCATTCATAGCACTGAACTTTTTAGAGTTCGACAGGAAGTTGGCTCATGTGAGGATCTATTATGTGTGTCTGCTAATGAACCAGATAATCTATGGCAACTATATGACCCTCGTCGAGACCTTTGGATTACGCTTCCTGTTCTCCCCTCTAAAATAAAAAACCTTTCCAACTTCGGCACTGTCTTTACTGCTGGAAAGCTGTTTGTTCTTGGTGGTGGCAGTGATGCTGTTGACCCACAGACTGGTGACCATGGTACCTTTTCAACCAGTGAGGTTTGGTCATACGATCCTGTAGCTAGGCAATGGGCCCCACGTGCATCTATGCTTGTTCCTCGTGCAATGTTTGCATGCTGTGTTTTAGGTGGAAAGATTGTTGTTGCAGGGGGCTTAACCAGCTGCCGGAAATCAATCTCTCTAGCAGAAATGTATGACCCTAACAAAGATTTGTGGGCTCCAATTCCTGATCTGCATTTATCTCATAATTCAGTCTGCTCGGGGATAGTGATTGGAGAAAAGATGTATGTCTTGCACAGGGGTTTATCAACGGTGCAAGTCTTCGACAATGTTGGGCTTCATTGGACGGTAGAGGATTATGGTTGGCCACAGGGTCCAATGACAGTCATTATGGATGCACTCTATGTGATGAGCCATGGAGTAATCTCCAGGCAAGACAGAGAATCATCAAAGGTATTGGTTTCGGCTTCTGAGTTCGGTGGCAGAGTTGGGTTTGCAATGGCTGGACTAGGAGATGAAATTTATGTGATTGGTGGGGTGATTCTCTCTGAACATGGGACCTCGGAAATCAAGCAAATATCAGACGTTGATGTTCTCACGATCGGAGGTGAAAGGCCAACTTGGCGCCAGGCTGCTCCGATGACACGGTGCAAAGGAAGCGTTTATGGTTGTGCGCAGTTGAGAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

346

Amino Acids

37.83

Weight (kDa)

5.72

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kelch_KLHDC2_KLHL20_DRC7 PF24681 71 - 213 3.1e-06 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 77 - 210 1e-08 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 126 - 264 8.9e-14 FKB95, Kelch-repeats domain
Kelch_1 PF01344 149 - 194 2.5e-10 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1023
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 3 cut(s) 48, 368, 972
AccB7I CCANNNNNTGG 1 cut(s) 356
AclWI GGATC 2 cut(s) 177, 395
AcoI YGGCCR 1 cut(s) 713
AcsI RAATTY 2 cut(s) 867, 1032
AcvI CACGTG 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 973
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 3 cut(s) 58, 356, 513
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 3 cut(s) 104, 776, 975
AluBI AGCT 5 cut(s) 91, 113, 313, 410, 510
AluI AGCT 5 cut(s) 91, 113, 313, 410, 510
Alw26I GTCTC 2 cut(s) 29, 225
AlwI GGATC 2 cut(s) 177, 395
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 3 cut(s) 420, 713, 962
ApaI GGGCCC 1 cut(s) 424
ApeKI GCWGC 3 cut(s) 113, 510, 980
ApoI RAATTY 2 cut(s) 867, 1032
Asp718I GGTACC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 975, 1024
AspS9I GGNCC 4 cut(s) 420, 421, 722, 906
AsuHPI GGTGA 3 cut(s) 371, 898, 968
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 2 cut(s) 722, 906
AxyI CCTNAGG 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 424
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BalI TGGCCA 1 cut(s) 715
BanI GGYRCC 3 cut(s) 48, 368, 972
BanII GRGCYC 2 cut(s) 424, 568
BauI CACGAG 1 cut(s) 447
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 661
BbvI GCAGC 3 cut(s) 100, 497, 967
BccI CCATC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 106, 778, 977
BcoDI GTCTC 2 cut(s) 29, 225
BfaI CTAG 3 cut(s) 411, 530, 857
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 976
BglI GCCNNNNNGGC 1 cut(s) 970
BisI GCNGC 3 cut(s) 114, 511, 981
BlsI GCNGC 3 cut(s) 115, 512, 982
Bme1390I CCNGG 3 cut(s) 106, 778, 977
Bme18I GGWCC 2 cut(s) 722, 906
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 4 cut(s) 420, 421, 722, 906
BmiI GGNNCC 9 cut(s) 50, 63, 370, 422, 423, 567, 723, 907, 974
BmrFI CCNGG 3 cut(s) 106, 778, 977
BmsI GCATC 3 cut(s) 328, 440, 733
BoxI GACNNNNGTC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 760
BsaAI YACGTR 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 973
BsaI GGTCTC 2 cut(s) 29, 225
BsaJI CCNNGG 3 cut(s) 364, 763, 909
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 356, 513
Bse1I ACTGG 2 cut(s) 361, 381
Bse21I CCTNAGG 1 cut(s) 44
Bse3DI GCAATG 3 cut(s) 422, 459, 852
BseBI CCWGG 3 cut(s) 106, 778, 977
BseDI CCNNGG 3 cut(s) 364, 763, 909
BseGI GGATG 2 cut(s) 76, 748
BseLI CCNNNNNNNGG 3 cut(s) 58, 356, 513
BseMI GCAATG 3 cut(s) 422, 459, 852
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 2 cut(s) 361, 381
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 3 cut(s) 100, 497, 967
Bsh1285I CGRYCG 1 cut(s) 951
BshFI GGCC 3 cut(s) 422, 715, 964
BshNI GGYRCC 3 cut(s) 48, 368, 972
BsiEI CGRYCG 1 cut(s) 951
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 1 cut(s) 514
BslFI GGGAC 1 cut(s) 919
BslI CCNNNNNNNGG 3 cut(s) 58, 356, 513
BsmAI GTCTC 2 cut(s) 29, 225
BsmFI GGGAC 1 cut(s) 919
BsnI GGCC 3 cut(s) 422, 715, 964
Bso31I GGTCTC 2 cut(s) 29, 225
BsoBI CYCGRG 1 cut(s) 607
Bsp120I GGGCCC 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 424, 568
Bsp143I GATC 4 cut(s) 169, 400, 577, 948
Bsp19I CCATGG 2 cut(s) 364, 763
BspANI GGCC 3 cut(s) 422, 715, 964
BspCNI CTCAG 1 cut(s) 811
BspLI GGNNCC 9 cut(s) 50, 63, 370, 422, 423, 567, 723, 907, 974
BspPI GGATC 2 cut(s) 177, 395
BspT107I GGYRCC 3 cut(s) 48, 368, 972
BspTNI GGTCTC 2 cut(s) 29, 225
BsrDI GCAATG 3 cut(s) 422, 459, 852
BsrI ACTGG 2 cut(s) 361, 381
BssECI CCNNGG 3 cut(s) 364, 763, 909
BssMI GATC 4 cut(s) 169, 400, 577, 948
BssNI GRCGYC 1 cut(s) 973
BssSI CACGAG 1 cut(s) 447
BssT1I CCWWGG 2 cut(s) 364, 763
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 106, 778, 977
Bst4CI ACNGT 5 cut(s) 295, 661, 697, 733, 996
BstACI GRCGYC 1 cut(s) 973
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 111, 463
BstDEI CTNAG 2 cut(s) 44, 819
BstDSI CCRYGG 2 cut(s) 364, 763
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 2 cut(s) 76, 748
BstH2I RGCGCY 1 cut(s) 976
BstHHI GCGC 2 cut(s) 975, 1024
BstKTI GATC 4 cut(s) 172, 403, 580, 951
BstMAI GTCTC 2 cut(s) 29, 225
BstMBI GATC 4 cut(s) 169, 400, 577, 948
BstMCI CGRYCG 1 cut(s) 951
BstMWI GCNNNNNNNGC 5 cut(s) 428, 458, 507, 970, 1005
BstNI CCWGG 3 cut(s) 106, 778, 977
BstNSI RCATGY 1 cut(s) 465
BstPAI GACNNNNGTC 1 cut(s) 225
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 3 cut(s) 104, 776, 975
BstSFI CTRYAG 1 cut(s) 405
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 100, 497, 967
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 422, 715, 964
BtgI CCRYGG 2 cut(s) 364, 763
BtsCI GGATG 2 cut(s) 76, 748
BtsI GCAGTG 1 cut(s) 340
BtsIMutI CAGTG 4 cut(s) 126, 291, 340, 388
Cac8I GCNNGC 2 cut(s) 111, 463
CfoI GCGC 2 cut(s) 975, 1024
Cfr13I GGNCC 4 cut(s) 420, 421, 722, 906
CseI GACGC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 369
CviAII CATG 6 cut(s) 57, 162, 365, 462, 764, 902
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 2 cut(s) 44, 819
DinI GGCGCC 1 cut(s) 974
DpnI GATC 4 cut(s) 171, 402, 579, 950
DpnII GATC 4 cut(s) 169, 400, 577, 948
EaeI YGGCCR 1 cut(s) 713
Eco130I CCWWGG 2 cut(s) 364, 763
Eco24I GRGCYC 2 cut(s) 424, 568
Eco31I GGTCTC 2 cut(s) 29, 225
Eco47I GGWCC 2 cut(s) 722, 906
Eco72I CACGTG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 607
Eco91I GGTNACC 1 cut(s) 359
EcoO109I RGGNCCY 2 cut(s) 421, 906
EcoO65I GGTNACC 1 cut(s) 359
EcoRII CCWGG 3 cut(s) 104, 776, 975
EcoT14I CCWWGG 2 cut(s) 364, 763
EcoT38I GRGCYC 2 cut(s) 424, 568
EgeI GGCGCC 1 cut(s) 974
EheI GGCGCC 1 cut(s) 974
ErhI CCWWGG 2 cut(s) 364, 763
FaeI CATG 6 cut(s) 60, 165, 368, 465, 767, 905
FalI AAGNNNNNCTT 2 cut(s) 952, 984
FaqI GGGAC 1 cut(s) 919
FatI CATG 6 cut(s) 56, 161, 364, 461, 763, 901
Fnu4HI GCNGC 3 cut(s) 114, 511, 981
FokI GGATG 2 cut(s) 63, 755
FriOI GRGCYC 2 cut(s) 424, 568
Fsp4HI GCNGC 3 cut(s) 114, 511, 981
FspBI CTAG 3 cut(s) 411, 530, 857
FspI TGCGCA 1 cut(s) 1023
GlaI GCGC 2 cut(s) 974, 1023
GluI GCNGC 3 cut(s) 114, 511, 981
GsuI CTGGAG 1 cut(s) 760
HaeII RGCGCY 1 cut(s) 976
HaeIII GGCC 3 cut(s) 422, 715, 964
HapII CCGG 1 cut(s) 514
HgaI GACGC 1 cut(s) 41
HhaI GCGC 2 cut(s) 975, 1024
Hin1I GRCGYC 1 cut(s) 973
Hin1II CATG 6 cut(s) 60, 165, 368, 465, 767, 905
Hin6I GCGC 2 cut(s) 973, 1022
HinP1I GCGC 2 cut(s) 973, 1022
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 2 cut(s) 791, 889
HpaII CCGG 1 cut(s) 514
HphI GGTGA 3 cut(s) 371, 898, 968
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 7 cut(s) 7, 820, 898, 913, 931, 953, 987
Hpy188III TCNNGA 3 cut(s) 230, 575, 946
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 14, 76
HpyCH4III ACNGT 5 cut(s) 295, 661, 697, 733, 996
HpyCH4IV ACGT 2 cut(s) 427, 933
HpyF10VI GCNNNNNNNGC 5 cut(s) 428, 458, 507, 970, 1005
HpyF3I CTNAG 2 cut(s) 44, 819
HpySE526I ACGT 2 cut(s) 427, 933
Hsp92I GRCGYC 1 cut(s) 973
Hsp92II CATG 6 cut(s) 60, 165, 368, 465, 767, 905
HspAI GCGC 2 cut(s) 973, 1022
KasI GGCGCC 1 cut(s) 972
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 4 cut(s) 169, 400, 577, 948
LmnI GCTCC 3 cut(s) 88, 571, 988
Lsp1109I GCAGC 3 cut(s) 100, 497, 967
LweI GCATC 3 cut(s) 328, 440, 733
MaeI CTAG 3 cut(s) 411, 530, 857
MaeII ACGT 2 cut(s) 427, 933
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 171, 402, 579, 950
MboI GATC 4 cut(s) 169, 400, 577, 948
MboII GAAGA 1 cut(s) 661
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 424, 568
MlsI TGGCCA 1 cut(s) 715
MluCI AATT 4 cut(s) 570, 595, 867, 1032
MluNI TGGCCA 1 cut(s) 715
Mly113I GGCGCC 1 cut(s) 973
MmeI TCCRAC 2 cut(s) 66, 306
MnlI CCTC 8 cut(s) 160, 234, 271, 379, 456, 694, 919, 947
Mox20I TGGCCA 1 cut(s) 715
MscI TGGCCA 1 cut(s) 715
MseI TTAA 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 715
MspA1I CMGCKG 1 cut(s) 510
MspI CCGG 1 cut(s) 514
MspR9I CCNGG 3 cut(s) 106, 778, 977
MvaI CCWGG 3 cut(s) 106, 778, 977
MwoI GCNNNNNNNGC 5 cut(s) 428, 458, 507, 970, 1005
NarI GGCGCC 1 cut(s) 973
NcoI CCATGG 2 cut(s) 364, 763
NdeII GATC 4 cut(s) 169, 400, 577, 948
NlaIII CATG 6 cut(s) 60, 165, 368, 465, 767, 905
NlaIV GGNNCC 9 cut(s) 50, 63, 370, 422, 423, 567, 723, 907, 974
NmuCI GTSAC 1 cut(s) 359
NsbI TGCGCA 1 cut(s) 1023
NspI RCATGY 1 cut(s) 465
PaeI GCATGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 791, 889
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 3 cut(s) 115, 512, 982
Ple19I CGATCG 1 cut(s) 951
PluTI GGCGCC 1 cut(s) 976
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
Ppu21I YACGTR 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 906
PshAI GACNNNNGTC 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 3 cut(s) 104, 776, 975
PspCI CACGTG 1 cut(s) 428
PspEI GGTNACC 1 cut(s) 359
PspGI CCWGG 3 cut(s) 104, 776, 975
PspN4I GGNNCC 9 cut(s) 50, 63, 370, 422, 423, 567, 723, 907, 974
PspOMI GGGCCC 1 cut(s) 420
PspPI GGNCC 4 cut(s) 420, 421, 722, 906
PspPPI RGGWCCY 1 cut(s) 906
PsuI RGATCY 1 cut(s) 169
PvuI CGATCG 1 cut(s) 951
PvuII CAGCTG 1 cut(s) 510
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 3 cut(s) 114, 511, 981
Sau3AI GATC 4 cut(s) 169, 400, 577, 948
Sau96I GGNCC 4 cut(s) 420, 421, 722, 906
ScrFI CCNGG 3 cut(s) 106, 778, 977
SduI GDGCHC 2 cut(s) 424, 568
SfaNI GCATC 3 cut(s) 328, 440, 733
SfcI CTRYAG 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 974
SinI GGWCC 2 cut(s) 722, 906
SphI GCATGC 1 cut(s) 465
Sse9I AATT 4 cut(s) 570, 595, 867, 1032
SspDI GGCGCC 1 cut(s) 972
SspMI CTAG 3 cut(s) 411, 530, 857
StyD4I CCNGG 3 cut(s) 104, 776, 975
StyI CCWWGG 2 cut(s) 364, 763
TaaI ACNGT 5 cut(s) 295, 661, 697, 733, 996
TaiI ACGT 2 cut(s) 430, 936
TaqI TCGA 3 cut(s) 145, 229, 672
TasI AATT 4 cut(s) 570, 595, 867, 1032
TfiI GAWTC 2 cut(s) 791, 889
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 4 cut(s) 133, 298, 340, 388
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 3 cut(s) 113, 510, 980
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 110, 207, 677, 879
TspRI CASTG 4 cut(s) 133, 298, 340, 388
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 722, 906
XapI RAATTY 2 cut(s) 867, 1032
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XspI CTAG 3 cut(s) 411, 530, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.