Isoamylase 2
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G03310 AT1G03310 |
| fragaria_vesca | FvH4_2g23950 |
| malus_domestica | MD03G1268800.v1.1 MD11G1289600.v1.1 |
| prunus_persica | Prupe.8G244800_v2.0.a1 |
| pyrus_communis | pycom11g25700 |
| rosa_chinensis | RchiOBHm_Chr6g0291581 |
| rosa_laevigata | RLG00000012105 |
| rosa_multiflora | Rmu_sc0002226.1_g000007 |
| rosa_roxburghii | Rroxscaffold_7G00175950 |
| rosa_rugosa | Rorug06G0220400 Rorug06G0220400 |
| rosa_samantha | Rh6AG332800 Rh6BG339600 Rh6CG346000 Rh6DG333200 |
| rosa_wichuraiana | Rw6G028900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1751 |
| Acc36I | ACCTGC | 2 cut(s) | 756, 1210 |
| AccB1I | GGYRCC | 1 cut(s) | 1325 |
| AccBSI | CCGCTC | 1 cut(s) | 926 |
| AccI | GTMKAC | 2 cut(s) | 480, 2664 |
| AccII | CGCG | 1 cut(s) | 1279 |
| AccIII | TCCGGA | 2 cut(s) | 2078, 2635 |
| AclWI | GGATC | 9 cut(s) | 94, 107, 555, 914, 1052, 1823, 1865, 1878, 2480 |
| AcuI | CTGAAG | 5 cut(s) | 519, 1599, 2112, 2396, 2575 |
| AdeI | CACNNNGTG | 1 cut(s) | 2861 |
| AfaI | GTAC | 7 cut(s) | 490, 645, 1887, 2181, 2453, 2715, 2933 |
| AflII | CTTAAG | 1 cut(s) | 2948 |
| AflIII | ACRYGT | 1 cut(s) | 1277 |
| AjnI | CCWGG | 4 cut(s) | 1368, 2069, 2545, 2683 |
| AleI | CACNNNNGTG | 1 cut(s) | 2763 |
| Alw21I | GWGCWC | 3 cut(s) | 184, 1050, 2770 |
| Alw26I | GTCTC | 7 cut(s) | 190, 746, 1013, 2606, 2760, 2958, 3011 |
| Alw44I | GTGCAC | 1 cut(s) | 180 |
| AlwI | GGATC | 9 cut(s) | 94, 107, 555, 914, 1052, 1823, 1865, 1878, 2480 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 542, 845 |
| Ama87I | CYCGRG | 2 cut(s) | 447, 912 |
| Aor13HI | TCCGGA | 2 cut(s) | 2078, 2635 |
| AoxI | GGCC | 5 cut(s) | 252, 1481, 1978, 2042, 2159 |
| ApaLI | GTGCAC | 1 cut(s) | 180 |
| ApeKI | GCWGC | 3 cut(s) | 54, 302, 2597 |
| AspLEI | GCGC | 2 cut(s) | 213, 2897 |
| AspS9I | GGNCC | 9 cut(s) | 418, 1424, 1469, 1481, 1546, 1978, 2042, 2095, 2159 |
| AsuC2I | CCSGG | 1 cut(s) | 1631 |
| AsuII | TTCGAA | 1 cut(s) | 692 |
| AvaI | CYCGRG | 2 cut(s) | 447, 912 |
| AvaII | GGWCC | 5 cut(s) | 418, 1424, 1469, 1546, 2095 |
| BaeGI | GKGCMC | 1 cut(s) | 184 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2443, 2476 |
| BamHI | GGATCC | 2 cut(s) | 99, 1870 |
| BanI | GGYRCC | 1 cut(s) | 1325 |
| BanII | GRGCYC | 1 cut(s) | 1050 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 184, 216 |
| BauI | CACGAG | 1 cut(s) | 2090 |
| BbsI | GAAGAC | 5 cut(s) | 887, 1192, 1697, 1850, 2958 |
| Bbv12I | GWGCWC | 3 cut(s) | 184, 1050, 2770 |
| BbvI | GCAGC | 3 cut(s) | 66, 289, 2609 |
| BccI | CCATC | 9 cut(s) | 2, 214, 947, 980, 1730, 1914, 2027, 2497, 2643 |
| BceAI | ACGGC | 3 cut(s) | 2018, 2685, 2719 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1802, 1836 |
| BciT130I | CCWGG | 4 cut(s) | 1370, 2071, 2547, 2685 |
| BclI | TGATCA | 2 cut(s) | 2461, 2602 |
| BcnI | CCSGG | 1 cut(s) | 1631 |
| BcoDI | GTCTC | 7 cut(s) | 190, 746, 1013, 2606, 2760, 2958, 3011 |
| BfmI | CTRYAG | 3 cut(s) | 389, 2163, 3036 |
| BfrI | CTTAAG | 1 cut(s) | 2948 |
| BfuAI | ACCTGC | 2 cut(s) | 756, 1210 |
| BglII | AGATCT | 1 cut(s) | 665 |
| BisI | GCNGC | 3 cut(s) | 55, 303, 2598 |
| BlsI | GCNGC | 3 cut(s) | 56, 304, 2599 |
| BmcAI | AGTACT | 3 cut(s) | 490, 645, 2933 |
| Bme1390I | CCNGG | 5 cut(s) | 1370, 1631, 2071, 2547, 2685 |
| Bme18I | GGWCC | 5 cut(s) | 418, 1424, 1469, 1546, 2095 |
| BmeT110I | CYCGRG | 2 cut(s) | 447, 912 |
| BmgT120I | GGNCC | 9 cut(s) | 418, 1424, 1469, 1481, 1546, 1978, 2042, 2095, 2159 |
| BmrFI | CCNGG | 5 cut(s) | 1370, 1631, 2071, 2547, 2685 |
| BmrI | ACTGGG | 6 cut(s) | 362, 552, 893, 1222, 1723, 2342 |
| BmsI | GCATC | 8 cut(s) | 661, 683, 832, 1103, 1120, 1766, 2783, 3041 |
| BmuI | ACTGGG | 6 cut(s) | 362, 552, 893, 1222, 1723, 2342 |
| BpiI | GAAGAC | 5 cut(s) | 887, 1192, 1697, 1850, 2958 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2788 |
| Bpu14I | TTCGAA | 1 cut(s) | 692 |
| BpuMI | CCSGG | 1 cut(s) | 1631 |
| Bsa29I | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 1056 |
| BsaI | GGTCTC | 2 cut(s) | 190, 1013 |
| BsaJI | CCNNGG | 1 cut(s) | 1369 |
| BsaWI | WCCGGW | 3 cut(s) | 2078, 2635, 2716 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3021, 3051 |
| Bse1I | ACTGG | 9 cut(s) | 357, 486, 547, 899, 1217, 1718, 2337, 2453, 2711 |
| Bse3DI | GCAATG | 5 cut(s) | 611, 1140, 1248, 1854, 2810 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 1056 |
| BseAI | TCCGGA | 2 cut(s) | 2078, 2635 |
| BseBI | CCWGG | 4 cut(s) | 1370, 2071, 2547, 2685 |
| BseCI | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BseDI | CCNNGG | 1 cut(s) | 1369 |
| BseGI | GGATG | 6 cut(s) | 225, 443, 2038, 2489, 2654, 2798 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 1056 |
| BseMI | GCAATG | 5 cut(s) | 611, 1140, 1248, 1854, 2810 |
| BseMII | CTCAG | 7 cut(s) | 638, 741, 1148, 1713, 1896, 2126, 2912 |
| BseNI | ACTGG | 9 cut(s) | 357, 486, 547, 899, 1217, 1718, 2337, 2453, 2711 |
| BseRI | GAGGAG | 2 cut(s) | 930, 2431 |
| BseSI | GKGCMC | 1 cut(s) | 184 |
| BseXI | GCAGC | 3 cut(s) | 66, 289, 2609 |
| BseYI | CCCAGC | 2 cut(s) | 712, 1866 |
| BsgI | GTGCAG | 2 cut(s) | 2616, 2839 |
| Bsh1236I | CGCG | 1 cut(s) | 1279 |
| BshFI | GGCC | 5 cut(s) | 254, 1483, 1980, 2044, 2161 |
| BshNI | GGYRCC | 1 cut(s) | 1325 |
| BshVI | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BsiHKAI | GWGCWC | 3 cut(s) | 184, 1050, 2770 |
| BsiHKCI | CYCGRG | 2 cut(s) | 447, 912 |
| BsiSI | CCGG | 6 cut(s) | 97, 762, 1630, 2079, 2636, 2717 |
| BslFI | GGGAC | 3 cut(s) | 431, 1177, 2033 |
| BsmAI | GTCTC | 7 cut(s) | 190, 746, 1013, 2606, 2760, 2958, 3011 |
| BsmBI | CGTCTC | 1 cut(s) | 3011 |
| BsmFI | GGGAC | 3 cut(s) | 431, 1177, 2033 |
| BsmI | GAATGC | 5 cut(s) | 98, 178, 583, 1384, 2048 |
| BsnI | GGCC | 5 cut(s) | 254, 1483, 1980, 2044, 2161 |
| Bso31I | GGTCTC | 2 cut(s) | 190, 1013 |
| BsoBI | CYCGRG | 2 cut(s) | 447, 912 |
| Bsp119I | TTCGAA | 1 cut(s) | 692 |
| Bsp1286I | GDGCHC | 3 cut(s) | 184, 1050, 2770 |
| Bsp13I | TCCGGA | 2 cut(s) | 2078, 2635 |
| BspANI | GGCC | 5 cut(s) | 254, 1483, 1980, 2044, 2161 |
| BspCNI | CTCAG | 7 cut(s) | 639, 742, 1147, 1714, 1895, 2127, 2911 |
| BspDI | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BspEI | TCCGGA | 2 cut(s) | 2078, 2635 |
| BspFNI | CGCG | 1 cut(s) | 1279 |
| BspMAI | CTGCAG | 1 cut(s) | 393 |
| BspMI | ACCTGC | 2 cut(s) | 756, 1210 |
| BspPI | GGATC | 9 cut(s) | 94, 107, 555, 914, 1052, 1823, 1865, 1878, 2480 |
| BspQI | GCTCTTC | 1 cut(s) | 2679 |
| BspT104I | TTCGAA | 1 cut(s) | 692 |
| BspT107I | GGYRCC | 1 cut(s) | 1325 |
| BspTI | CTTAAG | 1 cut(s) | 2948 |
| BspTNI | GGTCTC | 2 cut(s) | 190, 1013 |
| BsrBI | CCGCTC | 1 cut(s) | 926 |
| BsrDI | GCAATG | 5 cut(s) | 611, 1140, 1248, 1854, 2810 |
| BsrI | ACTGG | 9 cut(s) | 357, 486, 547, 899, 1217, 1718, 2337, 2453, 2711 |
| BssECI | CCNNGG | 1 cut(s) | 1369 |
| BssSI | CACGAG | 1 cut(s) | 2090 |
| Bst2BI | CACGAG | 1 cut(s) | 2090 |
| Bst2UI | CCWGG | 4 cut(s) | 1370, 2071, 2547, 2685 |
| Bst4CI | ACNGT | 4 cut(s) | 332, 422, 2303, 2762 |
| Bst6I | CTCTTC | 5 cut(s) | 234, 1910, 2523, 2679, 2980 |
| BstAFI | CTTAAG | 1 cut(s) | 2948 |
| BstBI | TTCGAA | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 6 cut(s) | 508, 1092, 1324, 1802, 2046, 2708 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| BstF5I | GGATG | 6 cut(s) | 225, 443, 2038, 2489, 2654, 2798 |
| BstFNI | CGCG | 1 cut(s) | 1279 |
| BstHHI | GCGC | 2 cut(s) | 213, 2897 |
| BstMAI | GTCTC | 7 cut(s) | 190, 746, 1013, 2606, 2760, 2958, 3011 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 469, 1655, 2594, 2793 |
| BstNI | CCWGG | 4 cut(s) | 1370, 2071, 2547, 2685 |
| BstNSI | RCATGY | 2 cut(s) | 325, 1094 |
| BstSCI | CCNGG | 5 cut(s) | 1368, 1629, 2069, 2545, 2683 |
| BstSFI | CTRYAG | 3 cut(s) | 389, 2163, 3036 |
| BstSLI | GKGCMC | 1 cut(s) | 184 |
| BstUI | CGCG | 1 cut(s) | 1279 |
| BstV1I | GCAGC | 3 cut(s) | 66, 289, 2609 |
| BstV2I | GAAGAC | 5 cut(s) | 887, 1192, 1697, 1850, 2958 |
| BstX2I | RGATCY | 7 cut(s) | 99, 547, 665, 919, 1057, 1870, 2485 |
| BstYI | RGATCY | 7 cut(s) | 99, 547, 665, 919, 1057, 1870, 2485 |
| Bsu15I | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BsuRI | GGCC | 5 cut(s) | 254, 1483, 1980, 2044, 2161 |
| BsuTUI | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| BtgZI | GCGATG | 1 cut(s) | 2353 |
| BtsCI | GGATG | 6 cut(s) | 225, 443, 2038, 2489, 2654, 2798 |
| BtsI | GCAGTG | 2 cut(s) | 2822, 2840 |
| BtsIMutI | CAGTG | 8 cut(s) | 279, 747, 2116, 2308, 2330, 2599, 2822, 2840 |
| BveI | ACCTGC | 2 cut(s) | 756, 1210 |
| Cac8I | GCNNGC | 6 cut(s) | 508, 1092, 1324, 1802, 2046, 2708 |
| CaiI | CAGNNNCTG | 2 cut(s) | 542, 845 |
| CfoI | GCGC | 2 cut(s) | 213, 2897 |
| Cfr13I | GGNCC | 9 cut(s) | 418, 1424, 1469, 1481, 1546, 1978, 2042, 2095, 2159 |
| ClaI | ATCGAT | 3 cut(s) | 526, 1072, 1602 |
| CseI | GACGC | 1 cut(s) | 1285 |
| Csp6I | GTAC | 7 cut(s) | 489, 644, 1886, 2180, 2452, 2714, 2932 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 715, 750 |
| CviQI | GTAC | 7 cut(s) | 489, 644, 1886, 2180, 2452, 2714, 2932 |
| DraIII | CACNNNGTG | 1 cut(s) | 2861 |
| Eam1104I | CTCTTC | 5 cut(s) | 234, 1910, 2523, 2679, 2980 |
| EarI | CTCTTC | 5 cut(s) | 234, 1910, 2523, 2679, 2980 |
| EciI | GGCGGA | 2 cut(s) | 2413, 2619 |
| Ecl136II | GAGCTC | 1 cut(s) | 1048 |
| Eco147I | AGGCCT | 1 cut(s) | 254 |
| Eco24I | GRGCYC | 1 cut(s) | 1050 |
| Eco31I | GGTCTC | 2 cut(s) | 190, 1013 |
| Eco32I | GATATC | 1 cut(s) | 1606 |
| Eco47I | GGWCC | 5 cut(s) | 418, 1424, 1469, 1546, 2095 |
| Eco53kI | GAGCTC | 1 cut(s) | 1048 |
| Eco57I | CTGAAG | 5 cut(s) | 519, 1599, 2112, 2396, 2575 |
| Eco88I | CYCGRG | 2 cut(s) | 447, 912 |
| EcoICRI | GAGCTC | 1 cut(s) | 1048 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1481, 1546, 1978, 2159 |
| EcoRI | GAATTC | 1 cut(s) | 2074 |
| EcoRII | CCWGG | 4 cut(s) | 1368, 2069, 2545, 2683 |
| EcoRV | GATATC | 1 cut(s) | 1606 |
| EcoT22I | ATGCAT | 4 cut(s) | 327, 676, 1096, 1759 |
| EcoT38I | GRGCYC | 1 cut(s) | 1050 |
| Esp3I | CGTCTC | 1 cut(s) | 3011 |
| FaqI | GGGAC | 3 cut(s) | 431, 1177, 2033 |
| FauI | CCCGC | 4 cut(s) | 844, 931, 1809, 2722 |
| FauNDI | CATATG | 1 cut(s) | 1063 |
| FbaI | TGATCA | 2 cut(s) | 2461, 2602 |
| FblI | GTMKAC | 2 cut(s) | 480, 2664 |
| Fnu4HI | GCNGC | 3 cut(s) | 55, 303, 2598 |
| FokI | GGATG | 6 cut(s) | 232, 430, 2045, 2476, 2661, 2805 |
| FriOI | GRGCYC | 1 cut(s) | 1050 |
| Fsp4HI | GCNGC | 3 cut(s) | 55, 303, 2598 |
| GlaI | GCGC | 2 cut(s) | 212, 2896 |
| GluI | GCNGC | 3 cut(s) | 55, 303, 2598 |
| GsaI | CCCAGC | 2 cut(s) | 716, 1870 |
| HaeIII | GGCC | 5 cut(s) | 254, 1483, 1980, 2044, 2161 |
| HapII | CCGG | 6 cut(s) | 97, 762, 1630, 2079, 2636, 2717 |
| HgaI | GACGC | 1 cut(s) | 1285 |
| HhaI | GCGC | 2 cut(s) | 213, 2897 |
| Hin6I | GCGC | 2 cut(s) | 211, 2895 |
| HinP1I | GCGC | 2 cut(s) | 211, 2895 |
| HincII | GTYRAC | 1 cut(s) | 2665 |
| HindII | GTYRAC | 1 cut(s) | 2665 |
| HindIII | AAGCTT | 2 cut(s) | 2313, 2785 |
| HinfI | GANTC | 5 cut(s) | 477, 848, 1599, 2614, 2963 |
| HpaII | CCGG | 6 cut(s) | 97, 762, 1630, 2079, 2636, 2717 |
| Hpy166II | GTNNAC | 7 cut(s) | 182, 481, 771, 1933, 2095, 2273, 2665 |
| Hpy188I | TCNGA | 8 cut(s) | 380, 670, 701, 1137, 2032, 2131, 2415, 2611 |
| Hpy8I | GTNNAC | 7 cut(s) | 182, 481, 771, 1933, 2095, 2273, 2665 |
| Hpy99I | CGWCG | 1 cut(s) | 1538 |
| HpyCH4III | ACNGT | 4 cut(s) | 332, 422, 2303, 2762 |
| HpyCH4IV | ACGT | 3 cut(s) | 1224, 1272, 1731 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 469, 1655, 2594, 2793 |
| HpySE526I | ACGT | 3 cut(s) | 1224, 1272, 1731 |
| HspAI | GCGC | 2 cut(s) | 211, 2895 |
| Kpn2I | TCCGGA | 2 cut(s) | 2078, 2635 |
| Ksp22I | TGATCA | 2 cut(s) | 2461, 2602 |
| LguI | GCTCTTC | 1 cut(s) | 2679 |
| LmnI | GCTCC | 6 cut(s) | 469, 931, 1045, 1354, 2400, 3029 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 289, 2609 |
| LweI | GCATC | 8 cut(s) | 661, 683, 832, 1103, 1120, 1766, 2783, 3041 |
| MaeII | ACGT | 3 cut(s) | 1224, 1272, 1731 |
| MbiI | CCGCTC | 1 cut(s) | 926 |
| MfeI | CAATTG | 2 cut(s) | 42, 1818 |
| MflI | RGATCY | 7 cut(s) | 99, 547, 665, 919, 1057, 1870, 2485 |
| MhlI | GDGCHC | 3 cut(s) | 184, 1050, 2770 |
| MluI | ACGCGT | 1 cut(s) | 1277 |
| MlyI | GAGTC | 3 cut(s) | 486, 2608, 2972 |
| MmeI | TCCRAC | 3 cut(s) | 1023, 1332, 2120 |
| Mph1103I | ATGCAT | 4 cut(s) | 327, 676, 1096, 1759 |
| MroI | TCCGGA | 2 cut(s) | 2078, 2635 |
| MseI | TTAA | 6 cut(s) | 140, 1068, 2196, 2253, 2378, 2949 |
| MslI | CAYNNNNRTG | 4 cut(s) | 320, 1734, 2763, 2815 |
| MspA1I | CMGCKG | 6 cut(s) | 235, 716, 1493, 1577, 2177, 2600 |
| MspCI | CTTAAG | 1 cut(s) | 2948 |
| MspI | CCGG | 6 cut(s) | 97, 762, 1630, 2079, 2636, 2717 |
| MspR9I | CCNGG | 5 cut(s) | 1370, 1631, 2071, 2547, 2685 |
| MunI | CAATTG | 2 cut(s) | 42, 1818 |
| Mva1269I | GAATGC | 5 cut(s) | 98, 178, 583, 1384, 2048 |
| MvaI | CCWGG | 4 cut(s) | 1370, 2071, 2547, 2685 |
| MvnI | CGCG | 1 cut(s) | 1279 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 469, 1655, 2594, 2793 |
| NciI | CCSGG | 1 cut(s) | 1631 |
| NdeI | CATATG | 1 cut(s) | 1063 |
| NmeAIII | GCCGAG | 1 cut(s) | 2217 |
| NsiI | ATGCAT | 4 cut(s) | 327, 676, 1096, 1759 |
| NspI | RCATGY | 2 cut(s) | 325, 1094 |
| NspV | TTCGAA | 1 cut(s) | 692 |
| OliI | CACNNNNGTG | 1 cut(s) | 2763 |
| PaeI | GCATGC | 1 cut(s) | 1094 |
| PaeR7I | CTCGAG | 1 cut(s) | 912 |
| PceI | AGGCCT | 1 cut(s) | 254 |
| PciSI | GCTCTTC | 1 cut(s) | 2679 |
| PctI | GAATGC | 5 cut(s) | 98, 178, 583, 1384, 2048 |
| PfeI | GAWTC | 2 cut(s) | 848, 1599 |
| PfoI | TCCNGGA | 1 cut(s) | 2069 |
| PkrI | GCNGC | 3 cut(s) | 56, 304, 2599 |
| PleI | GAGTC | 3 cut(s) | 485, 2608, 2971 |
| PpsI | GAGTC | 3 cut(s) | 485, 2608, 2971 |
| PpuMI | RGGWCCY | 1 cut(s) | 1546 |
| PsiI | TTATAA | 1 cut(s) | 1751 |
| Psp124BI | GAGCTC | 1 cut(s) | 1050 |
| Psp5II | RGGWCCY | 1 cut(s) | 1546 |
| Psp6I | CCWGG | 4 cut(s) | 1368, 2069, 2545, 2683 |
| PspFI | CCCAGC | 2 cut(s) | 712, 1866 |
| PspGI | CCWGG | 4 cut(s) | 1368, 2069, 2545, 2683 |
| PspPI | GGNCC | 9 cut(s) | 418, 1424, 1469, 1481, 1546, 1978, 2042, 2095, 2159 |
| PspPPI | RGGWCCY | 1 cut(s) | 1546 |
| PstI | CTGCAG | 1 cut(s) | 393 |
| PstNI | CAGNNNCTG | 2 cut(s) | 542, 845 |
| PsuI | RGATCY | 7 cut(s) | 99, 547, 665, 919, 1057, 1870, 2485 |
| PvuII | CAGCTG | 3 cut(s) | 716, 1493, 2600 |
| RsaI | GTAC | 7 cut(s) | 490, 645, 1887, 2181, 2453, 2715, 2933 |
| RsaNI | GTAC | 7 cut(s) | 489, 644, 1886, 2180, 2452, 2714, 2932 |
| RseI | CAYNNNNRTG | 4 cut(s) | 320, 1734, 2763, 2815 |
| SacI | GAGCTC | 1 cut(s) | 1050 |
| SalI | GTCGAC | 1 cut(s) | 2663 |
| SapI | GCTCTTC | 1 cut(s) | 2679 |
| SaqAI | TTAA | 6 cut(s) | 140, 1068, 2196, 2253, 2378, 2949 |
| SatI | GCNGC | 3 cut(s) | 55, 303, 2598 |
| Sau96I | GGNCC | 9 cut(s) | 418, 1424, 1469, 1481, 1546, 1978, 2042, 2095, 2159 |
| ScaI | AGTACT | 3 cut(s) | 490, 645, 2933 |
| SchI | GAGTC | 3 cut(s) | 486, 2608, 2972 |
| ScrFI | CCNGG | 5 cut(s) | 1370, 1631, 2071, 2547, 2685 |
| SduI | GDGCHC | 3 cut(s) | 184, 1050, 2770 |
| SfaNI | GCATC | 8 cut(s) | 661, 683, 832, 1103, 1120, 1766, 2783, 3041 |
| SfcI | CTRYAG | 3 cut(s) | 389, 2163, 3036 |
| Sfr274I | CTCGAG | 1 cut(s) | 912 |
| SfuI | TTCGAA | 1 cut(s) | 692 |
| SinI | GGWCC | 5 cut(s) | 418, 1424, 1469, 1546, 2095 |
| SlaI | CTCGAG | 1 cut(s) | 912 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 320, 1734, 2763, 2815 |
| SmlI | CTYRAG | 2 cut(s) | 912, 2948 |
| SmoI | CTYRAG | 2 cut(s) | 912, 2948 |
| SphI | GCATGC | 1 cut(s) | 1094 |
| SseBI | AGGCCT | 1 cut(s) | 254 |
| SspI | AATATT | 1 cut(s) | 598 |
| SstI | GAGCTC | 1 cut(s) | 1050 |
| StuI | AGGCCT | 1 cut(s) | 254 |
| StyD4I | CCNGG | 5 cut(s) | 1368, 1629, 2069, 2545, 2683 |
| TaaI | ACNGT | 4 cut(s) | 332, 422, 2303, 2762 |
| TaiI | ACGT | 3 cut(s) | 1227, 1275, 1734 |
| TatI | WGTACW | 4 cut(s) | 488, 643, 2179, 2931 |
| TfiI | GAWTC | 2 cut(s) | 848, 1599 |
| Tru1I | TTAA | 6 cut(s) | 140, 1068, 2196, 2253, 2378, 2949 |
| Tru9I | TTAA | 6 cut(s) | 140, 1068, 2196, 2253, 2378, 2949 |
| TscAI | CASTG | 8 cut(s) | 286, 754, 2116, 2308, 2337, 2599, 2822, 2847 |
| TseI | GCWGC | 3 cut(s) | 54, 302, 2597 |
| TspGWI | ACGGA | 5 cut(s) | 1551, 2645, 2908, 2993, 3042 |
| TspRI | CASTG | 8 cut(s) | 286, 754, 2116, 2308, 2337, 2599, 2822, 2847 |
| Vha464I | CTTAAG | 1 cut(s) | 2948 |
| VneI | GTGCAC | 1 cut(s) | 180 |
| VpaK11BI | GGWCC | 5 cut(s) | 418, 1424, 1469, 1546, 2095 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1476 |
| XbaI | TCTAGA | 4 cut(s) | 775, 1054, 1475, 2882 |
| XceI | RCATGY | 2 cut(s) | 325, 1094 |
| XhoI | CTCGAG | 1 cut(s) | 912 |
| XmiI | GTMKAC | 2 cut(s) | 480, 2664 |
| ZrmI | AGTACT | 3 cut(s) | 490, 645, 2933 |
| Zsp2I | ATGCAT | 4 cut(s) | 327, 676, 1096, 1759 |