pycom11g26130

CUGBP Elav-like family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
28776523 .. 28780226
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
ATGGCGGAAGGAGGGAAGAAGGAGAGGAACTCGCACGGCGAGGACTGCGTGAAGCTGTTCGTCGGCCAAGTGCCGAAGCACATGACGGAGGCTCAGCTCCTCGCAATGTTCAAAGACTTCGCTCTCGTCGACGAAGTCAACATCATCAAGGACAAGGCCACGCGCGCTTCCAGAGGGTGTTGCTTTGTGATATGCCCGTCGAGGGAGGAGGCGGATAAAGCGGTCGATGCGTGTCATAACAAGACGACTTTGCCCGGGGCATCTAGTCCTTTGCAAGTGAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACACAAGCTCTTTATTGGTATGCTTCCAAAGAATGTTTCCGAAGTTGAAGTTTCTGATCTTTTCTCTCAATATGGGACAGTAAAGGACCTACAAATATTAAGAGGTTCTCAGCAAACGAGCAAAGGCTGTGCATTCTTAAAGTATGAGACAAAACACCAAGCTCTTGCTGCCCTCGAAGCCATCAATGCAAAGTATAAAATGGAGGGTTCAAGCGTTCCTTTAGTTGTCAAATGGGCAGACACAGAAAAGGAAAGGCTAGCTCGGCGAGCTCAGAAAGCTCATTCCCAGGCTGCTAACGAGCCAAATGGTGATTCACATCCTTCATTATTTGGAGCCTTGCCCATGGGTTATGTTCCCTCATATAATGGTTACGGTTATCAGGCTCCTGGGACTTATGGACTCATGCCATACCGCCTACCTGGACTGCAGAATCAACAAGGTTTCCAAAATATGATGCCCCCCATAAACCAAGGAAATGCTTTGCATAGAATCACACCCCGCAATATTGCCCCTAGAAATTTTCCTATGCCTCCTACGAGTTATGTGGGCTCTGCTTATCATGCGGTTCCAGGTCTTCGGCATCCGATGGTGTATCCTGGAGGAATAATGAGCCACCAGCCATTGAGTTCACCTGGTTCAGTGTCACCTACAGTTGTGAACATTAACCCAGCATCGCCTGGCACTAGTAAAAGCCCTGGGTGTCAGGTTGAAGGTCCAGCTGGTGCTAATTTGTTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCCAATGCTTTTCAACCATTTGGTAGGGTTTTGAGTGCCAAGGTTTTTGTTGATAAAACAACCGGCATCAGCAAATGTTTCGGATTTGTAAGTTACGATTTACCAGAGTCTGCTGAATCTGCTATAAGTATGATGAATGGATACCAATTAGGGGGTAAGAAATTGAAGGTCCAGCTTAAGAGAGACAACAAAGAGAGCAAACCATATTGA

Protein Analysis

432

Amino Acids

47.01

Weight (kDa)

8.9

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 82 9.8e-14 RNA recognition motif
RRM_1 PF00076 107 - 170 1e-14 RNA recognition motif
RRM_1 PF00076 348 - 418 4.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 163, 165
AciI CCGC 6 cut(s) 5, 212, 221, 724, 811, 875
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 2 cut(s) 829, 1067
AfiI CCNNNNNNNGG 2 cut(s) 202, 1237
AflII CTTAAG 1 cut(s) 1262
AgsI TTSAA 6 cut(s) 112, 359, 522, 1022, 1100, 1252
AhlI ACTAGT 1 cut(s) 995
AjnI CCWGG 8 cut(s) 597, 697, 730, 880, 907, 943, 988, 1006
AjuI GAANNNNNNNTTGG 4 cut(s) 331, 363, 607, 639
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 2 cut(s) 452, 1263
AlwNI CAGNNNCTG 1 cut(s) 1196
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 2 cut(s) 64, 156
ApeKI GCWGC 2 cut(s) 479, 602
ApoI RAATTY 2 cut(s) 829, 1067
Asp700I GAANNNNTTC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 165, 167
AspS9I GGNCC 3 cut(s) 397, 1025, 1255
AsuC2I CCSGG 2 cut(s) 255, 256
AsuHPI GGTGA 3 cut(s) 632, 933, 948
AsuNHI GCTAGC 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 3 cut(s) 397, 1025, 1255
BanII GRGCYC 2 cut(s) 583, 863
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 2 cut(s) 466, 589
BccI CCATC 3 cut(s) 284, 500, 892
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 8 cut(s) 599, 699, 732, 882, 909, 945, 990, 1008
BciVI GTATCC 2 cut(s) 915, 1220
BcnI CCSGG 2 cut(s) 255, 256
BcoDI GTCTC 2 cut(s) 452, 1263
BcuI ACTAGT 1 cut(s) 995
BfaI CTAG 4 cut(s) 264, 569, 825, 996
BfmI CTRYAG 2 cut(s) 737, 960
BfrI CTTAAG 1 cut(s) 1262
BfuI GTATCC 2 cut(s) 915, 1220
BisI GCNGC 2 cut(s) 480, 603
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 2 cut(s) 481, 604
Bme18I GGWCC 3 cut(s) 397, 1025, 1255
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 397, 1025, 1255
BmiI GGNNCC 3 cut(s) 646, 696, 879
BmsI GCATC 6 cut(s) 217, 269, 756, 901, 992, 1161
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 878
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BpmI CTGGAG 1 cut(s) 930
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 1047
BpuMI CCSGG 2 cut(s) 255, 256
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 9 cut(s) 254, 255, 597, 654, 698, 781, 1006, 1007, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 1237
Bse118I RCCGGY 1 cut(s) 1148
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 8 cut(s) 599, 699, 732, 882, 909, 945, 990, 1008
BseDI CCNNGG 9 cut(s) 254, 255, 597, 654, 698, 781, 1006, 1007, 1125
BseGI GGATG 2 cut(s) 628, 892
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 2 cut(s) 202, 1237
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 107, 434, 596
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 2 cut(s) 89, 221
BseXI GCAGC 2 cut(s) 466, 589
BseYI CCCAGC 1 cut(s) 979
Bsh1236I CGCG 2 cut(s) 163, 165
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 66, 158
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 2 cut(s) 255, 1149
BslFI GGGAC 2 cut(s) 400, 715
BslI CCNNNNNNNGG 2 cut(s) 202, 1237
BsmAI GTCTC 2 cut(s) 452, 1263
BsmFI GGGAC 2 cut(s) 400, 715
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 66, 158
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 583, 863
Bsp143I GATC 2 cut(s) 367, 1075
Bsp1720I GCTNAGC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 654
BspACI CCGC 6 cut(s) 5, 212, 221, 724, 811, 875
BspANI GGCC 2 cut(s) 66, 158
BspCNI CTCAG 3 cut(s) 106, 433, 595
BspFNI CGCG 2 cut(s) 163, 165
BspLI GGNNCC 3 cut(s) 646, 696, 879
BspMAI CTGCAG 1 cut(s) 741
BspOI GCTAGC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 1262
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 1148
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 9 cut(s) 254, 255, 597, 654, 698, 781, 1006, 1007, 1125
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 2 cut(s) 367, 1075
BssT1I CCWWGG 3 cut(s) 654, 781, 1125
Bst2UI CCWGG 8 cut(s) 599, 699, 732, 882, 909, 945, 990, 1008
Bst4CI ACNGT 3 cut(s) 391, 686, 964
BstAFI CTTAAG 1 cut(s) 1262
BstC8I GCNNGC 4 cut(s) 165, 570, 579, 1086
BstDEI CTNAG 3 cut(s) 93, 420, 582
BstDSI CCRYGG 1 cut(s) 654
BstF5I GGATG 2 cut(s) 628, 892
BstFNI CGCG 2 cut(s) 163, 165
BstHHI GCGC 2 cut(s) 165, 167
BstKTI GATC 2 cut(s) 370, 1078
BstMAI GTCTC 2 cut(s) 452, 1263
BstMBI GATC 2 cut(s) 367, 1075
BstMCI CGRYCG 1 cut(s) 225
BstNI CCWGG 8 cut(s) 599, 699, 732, 882, 909, 945, 990, 1008
BstSFI CTRYAG 2 cut(s) 737, 960
BstUI CGCG 2 cut(s) 163, 165
BstV1I GCAGC 2 cut(s) 466, 589
BstV2I GAAGAC 1 cut(s) 878
BsuI GTATCC 2 cut(s) 915, 1220
BsuRI GGCC 2 cut(s) 66, 158
BtgI CCRYGG 1 cut(s) 654
BtgZI GCGATG 1 cut(s) 969
BtsCI GGATG 2 cut(s) 628, 892
BtsIMutI CAGTG 1 cut(s) 957
Cac8I GCNNGC 4 cut(s) 165, 570, 579, 1086
CaiI CAGNNNCTG 1 cut(s) 1196
CfoI GCGC 2 cut(s) 165, 167
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 3 cut(s) 397, 1025, 1255
Cfr9I CCCGGG 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 943
CviAII CATG 4 cut(s) 82, 655, 715, 872
DdeI CTNAG 3 cut(s) 93, 420, 582
DpnI GATC 2 cut(s) 369, 1077
DpnII GATC 2 cut(s) 367, 1075
EaeI YGGCCR 1 cut(s) 64
EciI GGCGGA 2 cut(s) 20, 227
Ecl136II GAGCTC 1 cut(s) 581
Eco130I CCWWGG 3 cut(s) 654, 781, 1125
Eco24I GRGCYC 2 cut(s) 583, 863
Eco47I GGWCC 3 cut(s) 397, 1025, 1255
Eco53kI GAGCTC 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 581
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 8 cut(s) 597, 697, 730, 880, 907, 943, 988, 1006
EcoT14I CCWWGG 3 cut(s) 654, 781, 1125
EcoT38I GRGCYC 2 cut(s) 583, 863
ErhI CCWWGG 3 cut(s) 654, 781, 1125
FaeI CATG 4 cut(s) 85, 658, 718, 875
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 2 cut(s) 400, 715
FatI CATG 4 cut(s) 81, 654, 714, 871
FauI CCCGC 1 cut(s) 818
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 480, 603
FokI GGATG 2 cut(s) 615, 879
FriOI GRGCYC 2 cut(s) 583, 863
Fsp4HI GCNGC 2 cut(s) 480, 603
FspBI CTAG 4 cut(s) 264, 569, 825, 996
GlaI GCGC 2 cut(s) 164, 166
GluI GCNGC 2 cut(s) 480, 603
GsaI CCCAGC 1 cut(s) 983
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 2 cut(s) 66, 158
HapII CCGG 2 cut(s) 255, 1149
HhaI GCGC 2 cut(s) 165, 167
Hin1II CATG 4 cut(s) 85, 658, 718, 875
Hin6I GCGC 2 cut(s) 163, 165
HinP1I GCGC 2 cut(s) 163, 165
HincII GTYRAC 2 cut(s) 130, 139
HindII GTYRAC 2 cut(s) 130, 139
HinfI GANTC 6 cut(s) 623, 711, 742, 801, 1193, 1202
HpaII CCGG 2 cut(s) 255, 1149
HphI GGTGA 3 cut(s) 632, 933, 948
Hpy166II GTNNAC 4 cut(s) 130, 139, 941, 970
Hpy188I TCNGA 5 cut(s) 352, 367, 585, 897, 1169
Hpy188III TCNNGA 3 cut(s) 171, 1064, 1079
Hpy8I GTNNAC 4 cut(s) 130, 139, 941, 970
Hpy99I CGWCG 4 cut(s) 65, 131, 134, 202
HpyAV CCTTC 4 cut(s) 13, 642, 1016, 1246
HpyCH4III ACNGT 3 cut(s) 391, 686, 964
HpyCH4V TGCA 5 cut(s) 274, 443, 500, 739, 796
HpyF3I CTNAG 3 cut(s) 93, 420, 582
Hsp92II CATG 4 cut(s) 85, 658, 718, 875
HspAI GCGC 2 cut(s) 163, 165
Kzo9I GATC 2 cut(s) 367, 1075
LmnI GCTCC 3 cut(s) 102, 644, 700
Lsp1109I GCAGC 2 cut(s) 466, 589
LweI GCATC 6 cut(s) 217, 269, 756, 901, 992, 1161
MabI ACCWGGT 1 cut(s) 943
MaeI CTAG 4 cut(s) 264, 569, 825, 996
MaeIII GTNAC 3 cut(s) 680, 954, 1178
MalI GATC 2 cut(s) 369, 1077
MboI GATC 2 cut(s) 367, 1075
MboII GAAGA 2 cut(s) 28, 878
MhlI GDGCHC 2 cut(s) 583, 863
MluCI AATT 5 cut(s) 829, 1039, 1067, 1232, 1247
MlyI GAGTC 2 cut(s) 705, 1202
MmeI TCCRAC 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 4 cut(s) 410, 449, 975, 1263
MspA1I CMGCKG 1 cut(s) 1031
MspCI CTTAAG 1 cut(s) 1262
MspI CCGG 2 cut(s) 255, 1149
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 8 cut(s) 599, 699, 732, 882, 909, 945, 990, 1008
MvnI CGCG 2 cut(s) 163, 165
NciI CCSGG 2 cut(s) 255, 256
NcoI CCATGG 1 cut(s) 654
NdeII GATC 2 cut(s) 367, 1075
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 4 cut(s) 85, 658, 718, 875
NlaIV GGNNCC 3 cut(s) 646, 696, 879
NmeAIII GCCGAG 1 cut(s) 553
NmuCI GTSAC 1 cut(s) 954
PasI CCCWGGG 1 cut(s) 1007
PauI GCGCGC 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 443
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 4 cut(s) 623, 742, 801, 1202
PflFI GACNNNGTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 2 cut(s) 481, 604
PleI GAGTC 2 cut(s) 705, 1201
PpsI GAGTC 2 cut(s) 705, 1201
PpuMI RGGWCCY 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 583
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 8 cut(s) 597, 697, 730, 880, 907, 943, 988, 1006
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 8 cut(s) 597, 697, 730, 880, 907, 943, 988, 1006
PspN4I GGNNCC 3 cut(s) 646, 696, 879
PspPI GGNCC 3 cut(s) 397, 1025, 1255
PspPPI RGGWCCY 1 cut(s) 397
PstI CTGCAG 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 1196
PsyI GACNNNGTC 1 cut(s) 134
PteI GCGCGC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 1031
SacI GAGCTC 1 cut(s) 583
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 4 cut(s) 410, 449, 975, 1263
SatI GCNGC 2 cut(s) 480, 603
Sau3AI GATC 2 cut(s) 367, 1075
Sau96I GGNCC 3 cut(s) 397, 1025, 1255
SchI GAGTC 2 cut(s) 705, 1202
SduI GDGCHC 2 cut(s) 583, 863
SexAI ACCWGGT 1 cut(s) 943
SfaNI GCATC 6 cut(s) 217, 269, 756, 901, 992, 1161
SfcI CTRYAG 2 cut(s) 737, 960
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 3 cut(s) 397, 1025, 1255
SmaI CCCGGG 1 cut(s) 256
SmlI CTYRAG 2 cut(s) 1062, 1262
SmoI CTYRAG 2 cut(s) 1062, 1262
SpeI ACTAGT 1 cut(s) 995
Sse9I AATT 5 cut(s) 829, 1039, 1067, 1232, 1247
SsiI CCGC 6 cut(s) 5, 212, 221, 724, 811, 875
SspI AATATT 2 cut(s) 408, 817
SspMI CTAG 4 cut(s) 264, 569, 825, 996
SstI GAGCTC 1 cut(s) 583
StyI CCWWGG 3 cut(s) 654, 781, 1125
TaaI ACNGT 3 cut(s) 391, 686, 964
TaqI TCGA 4 cut(s) 129, 200, 225, 486
TasI AATT 5 cut(s) 829, 1039, 1067, 1232, 1247
TfiI GAWTC 4 cut(s) 623, 742, 801, 1202
Tru1I TTAA 4 cut(s) 410, 449, 975, 1263
Tru9I TTAA 4 cut(s) 410, 449, 975, 1263
TscAI CASTG 1 cut(s) 957
TseFI GTSAC 1 cut(s) 954
TseI GCWGC 2 cut(s) 479, 602
Tsp45I GTSAC 1 cut(s) 954
TspDTI ATGAA 2 cut(s) 624, 1235
TspGWI ACGGA 1 cut(s) 101
TspMI CCCGGG 1 cut(s) 254
TspRI CASTG 1 cut(s) 957
Tth111I GACNNNGTC 1 cut(s) 134
Vha464I CTTAAG 1 cut(s) 1262
VpaK11BI GGWCC 3 cut(s) 397, 1025, 1255
XapI RAATTY 2 cut(s) 829, 1067
XmaI CCCGGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 4 cut(s) 264, 569, 825, 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.