Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012470

Physical Location & Seq

Genomic Coordinates Reverse (-)

29155135 .. 29156659

Gene Structure 1525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACCATGGATGCTGCTAGAAAGGAAATTCTCCGGCTAGTATTCGGCGATTCGTCGGACAGCGAGGACCTGGAACCGGGCGATGGATCCGATTCCGACCCGACCCATTTCTGGGAGCCAATCAAACAAATCAAGGGGCTGTGGTTGTGCAGAGACTTCCTCTCTCCTCAGCACCAGTCCTCTTTGCTCTCCACAATCCAAAACGAAGCATGGTTCACTCAAGCCTCTCATAATCAGGCAATGAGGTTCGGGGATCTTCCAGCATGGGCGGACGAGCTTTCGCGTTCTATTCACAAGGTTGCGCTTGCAAGTGACTATGTTTTGGGAAGCAATGATGGTGTGAAGGAGAATGCCTCTCCATTTCCATCCCATCTTTTGTGCAGAGAGCCGCTCTTTGACCAGCTCATTCTAAATTCTTACCAACCGGGTGAGGGAATCTGTGCGCACGTTGATCGATCATGCGCTTCGAAGATGGAATTGCCATTCTCTCCTTGGAGTCGTCATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

170

Amino Acids

18.96

Weight (kDa)

5.0

Isoelectric Point (pI)

57.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02485 AT4G02485
fragaria_vesca	FvH4_2g25440 FvH4_2g25440
malus_domestica	MD11G1304900.v1.1
prunus_persica	Prupe.8G258600_v2.0.a1
pyrus_communis	pycom11g26670
rosa_chinensis	RchiOBHm_Chr6g0293671
rosa_laevigata	RLG00000011934
rosa_multiflora	Rmu_sc0008436.1_g000003
rosa_roxburghii	Rroxscaffold_7G00174000
rosa_rugosa	Rorug06G0237200 Rorug06G0237300
rosa_samantha	Rh6AG349900 Rh6BG357400 Rh6CG364200 Rh6DG351100
rosa_wichuraiana	Rw0G003430 Rw6G030460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	391
AccII	CGCG	1 cut(s)	283
AciI	CCGC	2 cut(s)	269, 389
AclWI	GGATC	3 cut(s)	81, 94, 261
AcsI	RAATTY	2 cut(s)	27, 412
AfiI	CCNNNNNNNGG	5 cut(s)	76, 83, 111, 112, 431
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	277, 403
AluI	AGCT	2 cut(s)	277, 403
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	81, 94, 261
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	2 cut(s)	27, 412
AspLEI	GCGC	3 cut(s)	304, 445, 464
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	2 cut(s)	78, 426
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	67
BamHI	GGATCC	1 cut(s)	86
BbvCI	CCTCAGC	1 cut(s)	168
BccI	CCATC	5 cut(s)	77, 329, 373, 378, 466
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	78, 426
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	18, 38
BisI	GCNGC	2 cut(s)	15, 389
BlsI	GCNGC	2 cut(s)	16, 390
Bme1390I	CCNGG	3 cut(s)	71, 78, 426
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	75, 88, 117
BmrFI	CCNGG	3 cut(s)	71, 78, 426
BplI	GAGNNNNNCTC	6 cut(s)	144, 176, 338, 370, 375, 407
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	78, 426
Bsa29I	ATCGAT	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	6, 491
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 83, 111, 112, 431
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	246, 337
BseBI	CCWGG	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	6, 491
BseGI	GGATG	2 cut(s)	16, 365
BseLI	CCNNNNNNNGG	5 cut(s)	76, 83, 111, 112, 431
BseMI	GCAATG	2 cut(s)	246, 337
BseMII	CTCAG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	156
BsgI	GTGCAG	2 cut(s)	169, 400
Bsh1236I	CGCG	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	454
BsiSI	CCGG	3 cut(s)	34, 77, 425
BslI	CCNNNNNNNGG	5 cut(s)	76, 83, 111, 112, 431
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	467
Bsp143I	GATC	4 cut(s)	86, 253, 451, 455
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	2 cut(s)	269, 389
BspCNI	CTCAG	1 cut(s)	181
BspDI	ATCGAT	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	75, 88, 117
BspPI	GGATC	3 cut(s)	81, 94, 261
BspT104I	TTCGAA	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	391
BsrDI	GCAATG	2 cut(s)	246, 337
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	6, 491
BssMI	GATC	4 cut(s)	86, 253, 451, 455
BssT1I	CCWWGG	2 cut(s)	6, 491
Bst2UI	CCWGG	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	168
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	16, 365
BstFNI	CGCG	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	304, 445, 464
BstKTI	GATC	4 cut(s)	89, 256, 454, 458
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	86, 253, 451, 455
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	69, 76, 424
BstUI	CGCG	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	86, 253
BstYI	RGATCY	2 cut(s)	86, 253
Bsu15I	ATCGAT	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	16, 365
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	3 cut(s)	304, 445, 464
Cfr13I	GGNCC	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	454
CviAII	CATG	5 cut(s)	7, 210, 264, 459, 503
CviJI	RGCY	7 cut(s)	37, 118, 139, 224, 277, 388, 403
CviKI_1	RGCY	7 cut(s)	37, 118, 139, 224, 277, 388, 403
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	4 cut(s)	88, 255, 453, 457
DpnII	GATC	4 cut(s)	86, 253, 451, 455
EciI	GGCGGA	1 cut(s)	284
Eco130I	CCWWGG	2 cut(s)	6, 491
Eco47I	GGWCC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	6, 491
ErhI	CCWWGG	2 cut(s)	6, 491
FaeI	CATG	5 cut(s)	10, 213, 267, 462, 506
FaiI	YATR	7 cut(s)	8, 211, 231, 265, 318, 460, 504
FatI	CATG	5 cut(s)	6, 209, 263, 458, 502
Fnu4HI	GCNGC	2 cut(s)	15, 389
FokI	GGATG	2 cut(s)	23, 352
Fsp4HI	GCNGC	2 cut(s)	15, 389
FspAI	RTGCGCAY	1 cut(s)	444
FspBI	CTAG	2 cut(s)	18, 38
FspI	TGCGCA	1 cut(s)	444
GlaI	GCGC	3 cut(s)	303, 444, 463
GluI	GCNGC	2 cut(s)	15, 389
HapII	CCGG	3 cut(s)	34, 77, 425
HhaI	GCGC	3 cut(s)	304, 445, 464
Hin1II	CATG	5 cut(s)	10, 213, 267, 462, 506
Hin6I	GCGC	3 cut(s)	302, 443, 462
HinP1I	GCGC	3 cut(s)	302, 443, 462
HinfI	GANTC	4 cut(s)	50, 92, 435, 496
HpaII	CCGG	3 cut(s)	34, 77, 425
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	58, 91, 97
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	150, 308, 381
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	10, 213, 267, 462, 506
HspAI	GCGC	3 cut(s)	302, 443, 462
Kzo9I	GATC	4 cut(s)	86, 253, 451, 455
LmnI	GCTCC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	18, 38
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	4 cut(s)	88, 255, 453, 457
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	4 cut(s)	86, 253, 451, 455
MboII	GAAGA	2 cut(s)	248, 481
MflI	RGATCY	2 cut(s)	86, 253
MluCI	AATT	3 cut(s)	27, 412, 476
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	2 cut(s)	36, 120
MnlI	CCTC	8 cut(s)	58, 170, 177, 190, 235, 237, 364, 424
MspI	CCGG	3 cut(s)	34, 77, 425
MspR9I	CCNGG	3 cut(s)	71, 78, 426
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	283
NciI	CCSGG	2 cut(s)	78, 426
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	86, 253, 451, 455
NlaIII	CATG	5 cut(s)	10, 213, 267, 462, 506
NlaIV	GGNNCC	3 cut(s)	75, 88, 117
NmuCI	GTSAC	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	444
NspV	TTCGAA	1 cut(s)	467
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	3 cut(s)	50, 92, 435
PkrI	GCNGC	2 cut(s)	16, 390
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	75, 88, 117
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	86, 253
SatI	GCNGC	2 cut(s)	15, 389
Sau3AI	GATC	4 cut(s)	86, 253, 451, 455
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	71, 78, 426
SetI	ASST	6 cut(s)	72, 248, 279, 300, 405, 450
SfuI	TTCGAA	1 cut(s)	467
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	3 cut(s)	27, 412, 476
SsiI	CCGC	2 cut(s)	269, 389
SspMI	CTAG	2 cut(s)	18, 38
StyD4I	CCNGG	3 cut(s)	69, 76, 424
StyI	CCWWGG	2 cut(s)	6, 491
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	454, 467
TasI	AATT	3 cut(s)	27, 412, 476
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	3 cut(s)	50, 92, 435
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	2 cut(s)	27, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	489
XspI	CTAG	2 cut(s)	18, 38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.