Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010236

Physical Location & Seq

Genomic Coordinates Reverse (-)

1357121 .. 1359551

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAACATGGCGGCGCAGAAGCACTTACACGAGCTGCTGAGAGAAGTCCAGGAGCCGTTCCTGCTCAACAACTACATTGCCGATAAACGCTGCCAGCTGAAAAGTGCTTCCACGAAAAGCCAACAACACTTACAGGTCAAAAAACGCAGACCCATCTCCCAAGTTTCCAACTTTCCCGGCAAGCTTTGCAAAAACGCCTGCTTTTTCTCCCTCCAAGACTCGCCGGACCTCAGAAAATCCCCGCTCTTTGATTTCTCGTCACCGGCGTCCAAAAGCCCATGCAAAAGTCCTAACGCTATCTTCCTCCATATCCCGAACAGAACCGCCGCTCTCCTCGTCGAAGCCGCGATGAGGATTCAGAAGCAGTCGGTGAACTCAAAACCGAAAACCCAGAACAAAAACCACGGGTTCGGGCTACTCGGGTCGCTTTTTAAGAGGTTAAAGAATCGGAATCGGACCCGAAAGCGGGAAATCAACGGCGGCGATGGGGTTCAGGTCTCAGTGAAGGACATTCTCCAGTGGGATTCGTCAGTGGGGCGAAGAAAGATTTCTTCCGATCAGTTGGAGGAAACGGTTAAGTCTTGTTTGGAAGTTGAGGTCAAAAGTGCTTCCCTCATAAGCATTGGGAGGCCCAGCAGCGCGGTGTGGTCCGAAACCAACGAAGCCACTTCAAGCAGCTGCAGCCAGTCCGAGGAGGAATCGGCCGATACAGATTGCCCTTGTAATTGCGACAAGATTAATCCTTTTTGCGAAAGCCCTTTTCGTTTCGTCCTCCAACCAACCCCCTCGCCATCCGGCCACTGCACGCCGGAATTCACGTCGCCGGCGGCGTCCCCTAGTCGCCACAAACAAGAGGAGGAGGGGTTGCAGAAATTCCAAGCAGAAGTGGAGGAGGAGGAGGAAGAGAAGGAACAATGCAGTCCGGTTTCTGTATTGGACCCTCCGTTCCAAGAAGATGACGAGGGACATGACGATGAAGACGGTTTTGACTTGGAGTGCAGCTATGCCAATGTGCAGAGAACAAAGCACCACCTTCTGCTGAAGCTTCGTAGATTTGAGCAATTGTGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378

Protein Analysis

358

Amino Acids

40.29

Weight (kDa)

6.8

Isoelectric Point (pI)

78.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03670 AT5G03670
fragaria_vesca	FvH4_6g18100
malus_domestica	MD12G1019500.v1.1 MD14G1017300.v1.1
prunus_persica	Prupe.7G115800_v2.0.a1
pyrus_communis	pycom12g01650 pycom14g01520
rosa_chinensis	RchiOBHm_Chr3g0472371
rosa_laevigata	RLG00000024084
rosa_multiflora	Rmu_sc0000627.1_g000009 Rmu_sc0000798.1_g000016
rosa_roxburghii	Rroxscaffold_4G00299320 Rroxscaffold_6G00408980
rosa_rugosa	Rorug03G0124400
rosa_samantha	Rh3AG176800 Rh3BG202700 Rh3CG193000 Rh3CG200200 Rh3DG172400
rosa_wichuraiana	Rw3G016470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	244, 329
AccII	CGCG	2 cut(s)	347, 641
AciI	CCGC	9 cut(s)	11, 242, 324, 327, 345, 466, 480, 641, 827
AcoI	YGGCCR	2 cut(s)	702, 796
AcsI	RAATTY	2 cut(s)	812, 872
AcuI	CTGAAG	1 cut(s)	1061
AcyI	GRCGYC	2 cut(s)	266, 830
AfiI	CCNNNNNNNGG	4 cut(s)	351, 465, 466, 691
AgsI	TTSAA	1 cut(s)	672
AjiI	CACGTC	1 cut(s)	819
AjnI	CCWGG	1 cut(s)	48
AloI	GAACNNNNNNTCC	2 cut(s)	929, 961
AluBI	AGCT	6 cut(s)	34, 97, 184, 678, 1002, 1045
AluI	AGCT	6 cut(s)	34, 97, 184, 678, 1002, 1045
Alw26I	GTCTC	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	629, 702, 796
ApeKI	GCWGC	7 cut(s)	34, 90, 636, 675, 678, 681, 999
ApoI	RAATTY	2 cut(s)	812, 872
AseI	ATTAAT	1 cut(s)	738
Asp700I	GAANNNNTTC	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	16, 641
AspS9I	GGNCC	5 cut(s)	226, 456, 630, 648, 937
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	252, 382
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	4 cut(s)	226, 456, 648, 937
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	984
BbvI	GCAGC	7 cut(s)	21, 77, 648, 665, 687, 693, 1011
BccI	CCATC	3 cut(s)	161, 479, 799
BceAI	ACGGC	2 cut(s)	40, 493
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	502
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	1 cut(s)	679
Bme1390I	CCNGG	2 cut(s)	50, 177
Bme18I	GGWCC	4 cut(s)	226, 456, 648, 937
BmeT110I	CYCGRG	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	819
BmgT120I	GGNCC	5 cut(s)	226, 456, 630, 648, 937
BmiI	GGNNCC	3 cut(s)	54, 458, 939
BmrFI	CCNGG	2 cut(s)	50, 177
BpiI	GAAGAC	1 cut(s)	984
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	2 cut(s)	266, 830
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	403, 690
BsaWI	WCCGGW	1 cut(s)	922
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 465, 466, 691
Bse118I	RCCGGY	2 cut(s)	262, 823
Bse1I	ACTGG	2 cut(s)	517, 685
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	403, 690
BseGI	GGATG	1 cut(s)	791
BseLI	CCNNNNNNNGG	4 cut(s)	351, 465, 466, 691
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	3 cut(s)	29, 244, 513
BseNI	ACTGG	2 cut(s)	517, 685
BseRI	GAGGAG	7 cut(s)	323, 707, 869, 872, 905, 908, 911
BseX3I	CGGCCG	1 cut(s)	702
BseXI	GCAGC	7 cut(s)	21, 77, 648, 665, 687, 693, 1011
BseYI	CCCAGC	1 cut(s)	632
BsgI	GTGCAG	3 cut(s)	787, 1018, 1034
Bsh1236I	CGCG	2 cut(s)	347, 641
Bsh1285I	CGRYCG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	631, 704, 798
BsiEI	CGRYCG	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	7 cut(s)	177, 224, 263, 795, 809, 824, 923
BslFI	GGGAC	2 cut(s)	817, 978
BslI	CCNNNNNNNGG	4 cut(s)	351, 465, 466, 691
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	2 cut(s)	817, 978
BsnI	GGCC	3 cut(s)	631, 704, 798
Bso31I	GGTCTC	1 cut(s)	502
BsoBI	CYCGRG	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	556
BspACI	CCGC	9 cut(s)	11, 242, 324, 327, 345, 466, 480, 641, 827
BspANI	GGCC	3 cut(s)	631, 704, 798
BspCNI	CTCAG	3 cut(s)	30, 243, 512
BspFNI	CGCG	2 cut(s)	347, 641
BspLI	GGNNCC	3 cut(s)	54, 458, 939
BspMAI	CTGCAG	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	502
BsrBI	CCGCTC	2 cut(s)	244, 329
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	262, 823
BsrI	ACTGG	2 cut(s)	517, 685
BssAI	RCCGGY	2 cut(s)	262, 823
BssECI	CCNNGG	2 cut(s)	403, 690
BssMI	GATC	1 cut(s)	556
BssNI	GRCGYC	2 cut(s)	266, 830
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	574, 983
Bst6I	CTCTTC	1 cut(s)	897
BstACI	GRCGYC	2 cut(s)	266, 830
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	95, 182, 199, 806, 825
BstDEI	CTNAG	3 cut(s)	38, 230, 499
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	791
BstFNI	CGCG	2 cut(s)	347, 641
BstHHI	GCGC	2 cut(s)	16, 641
BstKTI	GATC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	502
BstMBI	GATC	1 cut(s)	556
BstMCI	CGRYCG	1 cut(s)	705
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 186, 681
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	48, 175
BstSFI	CTRYAG	1 cut(s)	679
BstUI	CGCG	2 cut(s)	347, 641
BstV1I	GCAGC	7 cut(s)	21, 77, 648, 665, 687, 693, 1011
BstV2I	GAAGAC	1 cut(s)	984
BstZI	CGGCCG	1 cut(s)	702
BsuRI	GGCC	3 cut(s)	631, 704, 798
BtgI	CCRYGG	1 cut(s)	403
BtgZI	GCGATG	2 cut(s)	362, 498
BtrI	CACGTC	1 cut(s)	819
BtsCI	GGATG	1 cut(s)	791
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	4 cut(s)	507, 524, 537, 799
Cac8I	GCNNGC	5 cut(s)	95, 182, 199, 806, 825
CfoI	GCGC	2 cut(s)	16, 641
Cfr10I	RCCGGY	2 cut(s)	262, 823
Cfr13I	GGNCC	5 cut(s)	226, 456, 630, 648, 937
CseI	GACGC	2 cut(s)	255, 819
CviAII	CATG	3 cut(s)	7, 279, 968
DdeI	CTNAG	3 cut(s)	38, 230, 499
DpnI	GATC	1 cut(s)	558
DpnII	GATC	1 cut(s)	556
EaeI	YGGCCR	2 cut(s)	702, 796
EagI	CGGCCG	1 cut(s)	702
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
EclXI	CGGCCG	1 cut(s)	702
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	4 cut(s)	226, 456, 648, 937
Eco52I	CGGCCG	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	1061
Eco88I	CYCGRG	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	10, 282, 971
FaiI	YATR	6 cut(s)	8, 280, 309, 617, 969, 1005
FaqI	GGGAC	2 cut(s)	817, 978
FatI	CATG	3 cut(s)	6, 278, 967
FauI	CCCGC	2 cut(s)	249, 459
FokI	GGATG	1 cut(s)	778
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	2 cut(s)	15, 640
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	631, 704, 798
HapII	CCGG	7 cut(s)	177, 224, 263, 795, 809, 824, 923
HgaI	GACGC	2 cut(s)	255, 819
HhaI	GCGC	2 cut(s)	16, 641
Hin1I	GRCGYC	2 cut(s)	266, 830
Hin1II	CATG	3 cut(s)	10, 282, 971
Hin6I	GCGC	2 cut(s)	14, 639
HinP1I	GCGC	2 cut(s)	14, 639
HindIII	AAGCTT	2 cut(s)	182, 1043
HinfI	GANTC	6 cut(s)	218, 355, 445, 451, 524, 698
HpaII	CCGG	7 cut(s)	177, 224, 263, 795, 809, 824, 923
HphI	GGTGA	2 cut(s)	252, 382
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	7 cut(s)	233, 360, 450, 456, 556, 652, 691
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	373
Hpy99I	CGWCG	2 cut(s)	341, 823
HpyAV	CCTTC	3 cut(s)	499, 901, 1043
HpyCH4III	ACNGT	2 cut(s)	574, 983
HpyCH4IV	ACGT	1 cut(s)	818
HpyCH4V	TGCA	8 cut(s)	189, 282, 681, 804, 868, 918, 999, 1015
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 186, 681
HpyF3I	CTNAG	3 cut(s)	38, 230, 499
HpySE526I	ACGT	1 cut(s)	818
Hsp92I	GRCGYC	2 cut(s)	266, 830
Hsp92II	CATG	3 cut(s)	10, 282, 971
HspAI	GCGC	2 cut(s)	14, 639
KroI	GCCGGC	1 cut(s)	823
KroNI	GCCGGC	1 cut(s)	825
Kzo9I	GATC	1 cut(s)	556
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	7 cut(s)	21, 77, 648, 665, 687, 693, 1011
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	1 cut(s)	818
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	1 cut(s)	558
MbiI	CCGCTC	2 cut(s)	244, 329
MboI	GATC	1 cut(s)	556
MboII	GAAGA	6 cut(s)	292, 543, 552, 914, 965, 989
MfeI	CAATTG	1 cut(s)	1061
MluCI	AATT	4 cut(s)	724, 812, 872, 1061
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	3 cut(s)	192, 543, 799
MreI	CGCCGGCG	1 cut(s)	823
MroNI	GCCGGC	1 cut(s)	823
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	4 cut(s)	432, 440, 576, 738
MslI	CAYNNNNRTG	1 cut(s)	972
MspA1I	CMGCKG	2 cut(s)	97, 678
MspI	CCGG	7 cut(s)	177, 224, 263, 795, 809, 824, 923
MspR9I	CCNGG	2 cut(s)	50, 177
MunI	CAATTG	1 cut(s)	1061
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	2 cut(s)	347, 641
MwoI	GCNNNNNNNGC	3 cut(s)	61, 186, 681
NaeI	GCCGGC	1 cut(s)	825
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	1 cut(s)	556
NgoMIV	GCCGGC	1 cut(s)	823
NlaIII	CATG	3 cut(s)	10, 282, 971
NlaIV	GGNNCC	3 cut(s)	54, 458, 939
NmuCI	GTSAC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	263, 827
PdiI	GCCGGC	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	355, 445, 451, 524, 698
PfoI	TCCNGGA	1 cut(s)	48
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	48
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	54, 458, 939
PspPI	GGNCC	5 cut(s)	226, 456, 630, 648, 937
PstI	CTGCAG	1 cut(s)	683
PvuII	CAGCTG	2 cut(s)	97, 678
RseI	CAYNNNNRTG	1 cut(s)	972
SaqAI	TTAA	4 cut(s)	432, 440, 576, 738
Sau3AI	GATC	1 cut(s)	556
Sau96I	GGNCC	5 cut(s)	226, 456, 630, 648, 937
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	50, 177
SfcI	CTRYAG	1 cut(s)	679
SgrAI	CRCCGGYG	2 cut(s)	262, 823
SinI	GGWCC	4 cut(s)	226, 456, 648, 937
SmiMI	CAYNNNNRTG	1 cut(s)	972
Sse9I	AATT	4 cut(s)	724, 812, 872, 1061
SsiI	CCGC	9 cut(s)	11, 242, 324, 327, 345, 466, 480, 641, 827
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	48, 175
TaaI	ACNGT	2 cut(s)	574, 983
TaiI	ACGT	1 cut(s)	821
TaqI	TCGA	1 cut(s)	339
TasI	AATT	4 cut(s)	724, 812, 872, 1061
TauI	GCSGC	5 cut(s)	14, 329, 347, 483, 830
TfiI	GAWTC	5 cut(s)	355, 445, 451, 524, 698
Tru1I	TTAA	4 cut(s)	432, 440, 576, 738
Tru9I	TTAA	4 cut(s)	432, 440, 576, 738
TscAI	CASTG	4 cut(s)	507, 524, 537, 806
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	7 cut(s)	34, 90, 636, 675, 678, 681, 999
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	17, 990
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	4 cut(s)	507, 524, 537, 806
VpaK11BI	GGWCC	4 cut(s)	226, 456, 648, 937
VspI	ATTAAT	1 cut(s)	738
XapI	RAATTY	2 cut(s)	812, 872
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.