Rorug03G0124400

Transcriptional activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010236
Physical Location & Seq
Forward (+)
10042659 .. 10045252
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0124400.1

Sequence Viewer

Length: 600 bp
ATGGGTCTGATGAGCCTTGCTTTTTTGGGTGATACAGTTGCAGATGTGATCTTGTGGAGGCAGAAAGATGTGACAATGGGGATACTGTTAGTAGCTTTAGCTGCTTGGGTGGTGTTTGAGAAGTCTGGTTATACATTGCTATCACTGGTCTCTAGTGTTCTTCTCCTCCTCTTTGTCATACTCTTTCTCTGGGCTAAATCGGCTGCCATTCTTAACCGACCAGCTCCACCCCTGCCTGAATTGCAGTTATCAGAAGAAATGGTGAATGAAGCTGCAGCTGTCATCCGGACTCATGTAAATGCTTTGCTTTTGGTTTCACAAGATATTTCTCTTGGTAAAGACTCGAGGTTGTTCTTCGAAGTAGCTGCTTACCTGCTGCTGATTTATTTTGTTGGTGGCTTGACTGATTTCCTGACTCTGAGCTACACCAGCCTTGTCATTGTTCTAACAATTCCAGCATTCTATGAGAGATATGAACATTATGTGGACAAGTATGTCATGATGGGGTACAGGAAATTGCTGCAATTGTATGTTAAACTAGATGAAGAATATGTGAGCAGATTTCAACACTTGGTTCTGGAAAAGAAGAAACTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04115 map04115
Pfam Domains
Protein Families
Transcrip_act

Protein Analysis

199

Amino Acids

22.64

Weight (kDa)

6.3

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 13 - 167 1.8e-48 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 381
AccIII TCCGGA 1 cut(s) 285
AfaI GTAC 1 cut(s) 509
AgsI TTSAA 1 cut(s) 566
AluBI AGCT 7 cut(s) 95, 101, 224, 272, 278, 365, 423
AluI AGCT 7 cut(s) 95, 101, 224, 272, 278, 365, 423
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 285
ApeKI GCWGC 7 cut(s) 101, 203, 272, 275, 365, 376, 520
AsuHPI GGTGA 2 cut(s) 41, 274
AsuII TTCGAA 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 343
BbvI GCAGC 7 cut(s) 88, 190, 259, 287, 352, 363, 507
BccI CCATC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 153, 539
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 381
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 7 cut(s) 102, 204, 273, 276, 366, 377, 521
BlsI GCNGC 7 cut(s) 103, 205, 274, 277, 367, 378, 522
BmeT110I CYCGRG 1 cut(s) 343
Bpu14I TTCGAA 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 285
BseGI GGATG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 155, 158
BseXI GCAGC 7 cut(s) 88, 190, 259, 287, 352, 363, 507
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 458
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 343
Bsp119I TTCGAA 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 411
BspEI TCCGGA 1 cut(s) 285
BspHI TCATGA 1 cut(s) 498
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 381
BspT104I TTCGAA 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 150
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 2 cut(s) 37, 87
BstBI TTCGAA 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 4 cut(s) 101, 200, 241, 429
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 7 cut(s) 88, 190, 259, 287, 352, 363, 507
BsuI GTATCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 498
Csp6I GTAC 1 cut(s) 508
CviAII CATG 2 cut(s) 293, 499
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 419
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 494
DseDI GACNNNNNNGTC 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 343
FaeI CATG 2 cut(s) 296, 502
FatI CATG 2 cut(s) 292, 498
Fnu4HI GCNGC 7 cut(s) 102, 204, 273, 276, 366, 377, 521
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 7 cut(s) 102, 204, 273, 276, 366, 377, 521
FspBI CTAG 2 cut(s) 153, 539
GluI GCNGC 7 cut(s) 102, 204, 273, 276, 366, 377, 521
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 296, 502
HinfI GANTC 3 cut(s) 289, 341, 415
HpaII CCGG 1 cut(s) 286
HphI GGTGA 2 cut(s) 41, 274
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 3 cut(s) 9, 253, 420
Hpy188III TCNNGA 4 cut(s) 286, 412, 499, 578
Hpy8I GTNNAC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 37, 87
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 41, 244, 275, 523
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 200, 241, 429
HpyF3I CTNAG 1 cut(s) 419
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 2 cut(s) 296, 502
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 7 cut(s) 88, 190, 259, 287, 352, 363, 507
MaeI CTAG 2 cut(s) 153, 539
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 5 cut(s) 152, 266, 346, 557, 598
MfeI CAATTG 1 cut(s) 524
MluCI AATT 4 cut(s) 239, 450, 515, 524
MlyI GAGTC 3 cut(s) 283, 335, 409
MnlI CCTC 4 cut(s) 51, 176, 179, 339
MroI TCCGGA 1 cut(s) 285
MseI TTAA 2 cut(s) 213, 534
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 101, 200, 241, 429
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 296, 502
NmuCI GTSAC 1 cut(s) 70
NspV TTCGAA 1 cut(s) 357
PaeR7I CTCGAG 1 cut(s) 343
PagI TCATGA 1 cut(s) 498
PctI GAATGC 1 cut(s) 458
PkrI GCNGC 7 cut(s) 103, 205, 274, 277, 367, 378, 522
PleI GAGTC 3 cut(s) 283, 335, 409
PpsI GAGTC 3 cut(s) 283, 335, 409
PspXI VCTCGAGB 1 cut(s) 343
PstI CTGCAG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 2 cut(s) 213, 534
SatI GCNGC 7 cut(s) 102, 204, 273, 276, 366, 377, 521
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 3 cut(s) 283, 335, 409
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 343
SfuI TTCGAA 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 4 cut(s) 239, 450, 515, 524
SspMI CTAG 2 cut(s) 153, 539
TaaI ACNGT 2 cut(s) 37, 87
TaiI ACGT 1 cut(s) 598
TaqI TCGA 2 cut(s) 344, 357
TasI AATT 4 cut(s) 239, 450, 515, 524
Tru1I TTAA 2 cut(s) 213, 534
Tru9I TTAA 2 cut(s) 213, 534
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 7 cut(s) 101, 203, 272, 275, 365, 376, 520
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 282, 489, 558
TspRI CASTG 1 cut(s) 150
XhoI CTCGAG 1 cut(s) 343
XspI CTAG 2 cut(s) 153, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.