pycom12g05090

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011995
Physical Location & Seq
Reverse (-)
4966315 .. 4968245
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGAGACATGCTCGAGAACAGGGAACCATATCTGAAGATATCCTTAGAAGTGCCTTTTCTTCAACTGAGGATGGGTTCCTTACTCTTGTGCGTAGGACATGTGGAATAAAGCCATTAATGGCAGCAATTGGGTCTTGTTGTCTGGTTGGAGTTATCTGGAGGGGGACATTGTATGTTGCTAATCTAGGAGACTCCCGAGCAGTCATTGGTTCTGTAGGTAGATCGAATAAGATAGGTGCCGAACAGCTAAATAGGGAGCACAATGCAAGTATGGAGGAGGTTAGACAAGAACTCAGGTCTTTGCATCCAGATGATTCACATATCGTAGTTATGAAGCAGGGAGTTTGGCGTATCAAAGGCATCATACAGGTATCTAGATCTATCGGTGATGCATACTTAAAGAGACCAGAGTTTTCGCTTGATCCTACGTTTCCGAGGTTCCACCTTCCTGAACCTCTTGGGCGACCTGTGCTAACAGCAGAACCATCTGTATGTGCTAGAGTGCTACAGCCCAATGATAAATTTGTAATATTCGCATCCGATGGGCTATGGGAGCACATGACAAATCAGGAAGCTGTGGAGATTGTACACAATAATCCACGAGCAGGAATTGCGAAAAGACTTCTTAAAACAGCTCTGAGTGAGGCAGCTAGGAAAAGGGAGATGGGACACGATGACCTTAAGAAGGTTGAAAAGGGAGTTAGGCGGTTCTTTCACGATGACATTACGATTGTTGTCATTTTTGCTGGGATCGATCACGATTTACTGGGGAAGAACCAACCCGCGCCTGAGCTGTCAGTAAGAGGGTTCGTTGACACTGTTGGACCGTCAAGGTTTAACATGTACAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

285

Amino Acids

31.73

Weight (kDa)

8.9

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 11 - 218 3.3e-32 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06750 AT5G06750 AT5G06750
fragaria_vesca FvH4_6g22310
malus_domestica MD12G1057000.v1.1 MD14G1057600.v1.1
prunus_persica Prupe.7G077100_v2.0.a1
pyrus_communis pycom12g05090 pycom14g04670
rosa_chinensis RchiOBHm_Chr3g0479661
rosa_laevigata RLG00000023549
rosa_multiflora Rmu_sc0003755.1_g000003
rosa_roxburghii Rroxscaffold_6G00402080
rosa_rugosa Rorug03G0177300
rosa_samantha Rh3AG228000 Rh3BG261200 Rh3CG258300 Rh3DG254500
rosa_wichuraiana Rw3G020400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccII CGCG 1 cut(s) 785
AciI CCGC 2 cut(s) 706, 783
AclWI GGATC 2 cut(s) 416, 758
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 2 cut(s) 588, 845
AfiI CCNNNNNNNGG 2 cut(s) 605, 685
AflII CTTAAG 1 cut(s) 680
AflIII ACRYGT 2 cut(s) 98, 840
AgsI TTSAA 2 cut(s) 63, 692
AluBI AGCT 5 cut(s) 247, 575, 635, 650, 793
AluI AGCT 5 cut(s) 247, 575, 635, 650, 793
Alw21I GWGCWC 2 cut(s) 261, 558
Alw26I GTCTC 2 cut(s) 183, 397
AlwI GGATC 2 cut(s) 416, 758
Ama87I CYCGRG 2 cut(s) 12, 195
ApeKI GCWGC 2 cut(s) 122, 647
ApoI RAATTY 1 cut(s) 521
AseI ATTAAT 1 cut(s) 116
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 2 cut(s) 12, 195
AvaII GGWCC 1 cut(s) 824
BanI GGYRCC 1 cut(s) 236
BauI CACGAG 1 cut(s) 600
Bbv12I GWGCWC 2 cut(s) 261, 558
BbvI GCAGC 2 cut(s) 134, 659
BccI CCATC 4 cut(s) 65, 493, 536, 658
BcoDI GTCTC 2 cut(s) 183, 397
BfaI CTAG 4 cut(s) 185, 375, 498, 651
BfmI CTRYAG 2 cut(s) 213, 506
BfrI CTTAAG 1 cut(s) 680
BglII AGATCT 1 cut(s) 377
BisI GCNGC 2 cut(s) 123, 648
BlsI GCNGC 2 cut(s) 124, 649
Bme18I GGWCC 1 cut(s) 824
BmeT110I CYCGRG 2 cut(s) 12, 195
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 4 cut(s) 25, 77, 238, 440
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 4 cut(s) 313, 369, 379, 545
BmuI ACTGGG 1 cut(s) 776
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 789
Bsa29I ATCGAT 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 434
Bsc4I CCNNNNNNNGG 2 cut(s) 605, 685
Bse1I ACTGG 1 cut(s) 771
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 3 cut(s) 76, 304, 536
BseLI CCNNNNNNNGG 2 cut(s) 605, 685
BseMII CTCAG 4 cut(s) 57, 307, 629, 780
BseNI ACTGG 1 cut(s) 771
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 134, 659
BseYI CCCAGC 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 785
BshNI GGYRCC 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 753
BsiHKAI GWGCWC 2 cut(s) 261, 558
BsiHKCI CYCGRG 2 cut(s) 12, 195
BslFI GGGAC 2 cut(s) 178, 681
BslI CCNNNNNNNGG 2 cut(s) 605, 685
BsmAI GTCTC 2 cut(s) 183, 397
BsmFI GGGAC 2 cut(s) 178, 681
Bso31I GGTCTC 1 cut(s) 397
BsoBI CYCGRG 2 cut(s) 12, 195
Bsp1286I GDGCHC 2 cut(s) 261, 558
Bsp1407I TGTACA 2 cut(s) 586, 843
Bsp143I GATC 5 cut(s) 221, 377, 421, 750, 754
BspACI CCGC 2 cut(s) 706, 783
BspCNI CTCAG 4 cut(s) 58, 306, 630, 781
BspDI ATCGAT 1 cut(s) 753
BspFNI CGCG 1 cut(s) 785
BspLI GGNNCC 4 cut(s) 25, 77, 238, 440
BspPI GGATC 2 cut(s) 416, 758
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 397
BsrGI TGTACA 2 cut(s) 586, 843
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 5 cut(s) 221, 377, 421, 750, 754
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst4CI ACNGT 2 cut(s) 820, 828
BstAFI CTTAAG 1 cut(s) 680
BstAPI GCANNNNNTGC 1 cut(s) 611
BstAUI TGTACA 2 cut(s) 586, 843
BstDEI CTNAG 5 cut(s) 44, 66, 293, 638, 789
BstENI CCTNNNNNAGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 76, 304, 536
BstFNI CGCG 1 cut(s) 785
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 5 cut(s) 224, 380, 424, 753, 757
BstMAI GTCTC 2 cut(s) 183, 397
BstMBI GATC 5 cut(s) 221, 377, 421, 750, 754
BstMWI GCNNNNNNNGC 3 cut(s) 469, 553, 611
BstNSI RCATGY 3 cut(s) 11, 102, 844
BstSFI CTRYAG 2 cut(s) 213, 506
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 2 cut(s) 134, 659
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 753
BsuTUI ATCGAT 1 cut(s) 753
BtsCI GGATG 3 cut(s) 76, 304, 536
BtsIMutI CAGTG 1 cut(s) 816
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 824
ClaI ATCGAT 1 cut(s) 753
Csp6I GTAC 2 cut(s) 587, 844
CviAII CATG 4 cut(s) 8, 99, 559, 841
CviJI RGCY 8 cut(s) 112, 247, 511, 547, 575, 635, 650, 793
CviKI_1 RGCY 8 cut(s) 112, 247, 511, 547, 575, 635, 650, 793
CviQI GTAC 2 cut(s) 587, 844
DdeI CTNAG 5 cut(s) 44, 66, 293, 638, 789
DpnI GATC 5 cut(s) 223, 379, 423, 752, 756
DpnII GATC 5 cut(s) 221, 377, 421, 750, 754
Eco31I GGTCTC 1 cut(s) 397
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 824
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 12, 195
EcoNI CCTNNNNNAGG 1 cut(s) 683
EcoRV GATATC 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 394
FaeI CATG 4 cut(s) 11, 102, 562, 844
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 2 cut(s) 178, 681
FatI CATG 4 cut(s) 7, 98, 558, 840
FauI CCCGC 1 cut(s) 790
Fnu4HI GCNGC 2 cut(s) 123, 648
FokI GGATG 3 cut(s) 83, 291, 523
Fsp4HI GCNGC 2 cut(s) 123, 648
FspBI CTAG 4 cut(s) 185, 375, 498, 651
GlaI GCGC 1 cut(s) 786
GluI GCNGC 2 cut(s) 123, 648
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 178
HhaI GCGC 1 cut(s) 787
Hin1II CATG 4 cut(s) 11, 102, 562, 844
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 2 cut(s) 191, 314
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 589, 814
Hpy188I TCNGA 4 cut(s) 34, 435, 541, 639
Hpy188III TCNNGA 9 cut(s) 14, 157, 195, 308, 375, 449, 569, 716, 758
Hpy8I GTNNAC 2 cut(s) 589, 814
HpyAV CCTTC 2 cut(s) 455, 679
HpyCH4III ACNGT 2 cut(s) 820, 828
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 266, 304, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 469, 553, 611
HpyF3I CTNAG 5 cut(s) 44, 66, 293, 638, 789
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 4 cut(s) 11, 102, 562, 844
HspAI GCGC 1 cut(s) 785
Kzo9I GATC 5 cut(s) 221, 377, 421, 750, 754
LmnI GCTCC 2 cut(s) 256, 553
Lsp1109I GCAGC 2 cut(s) 134, 659
LweI GCATC 4 cut(s) 313, 369, 379, 545
MaeI CTAG 4 cut(s) 185, 375, 498, 651
MaeII ACGT 1 cut(s) 428
MalI GATC 5 cut(s) 223, 379, 423, 752, 756
MboI GATC 5 cut(s) 221, 377, 421, 750, 754
MboII GAAGA 3 cut(s) 47, 51, 784
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 2 cut(s) 261, 558
MluCI AATT 3 cut(s) 126, 521, 609
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 127, 802
MnlI CCTC 8 cut(s) 61, 153, 268, 271, 429, 465, 637, 797
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 5 cut(s) 116, 398, 627, 681, 837
MslI CAYNNNNRTG 2 cut(s) 309, 490
MspCI CTTAAG 1 cut(s) 680
MunI CAATTG 1 cut(s) 126
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 3 cut(s) 469, 553, 611
NdeII GATC 5 cut(s) 221, 377, 421, 750, 754
NlaIII CATG 4 cut(s) 11, 102, 562, 844
NlaIV GGNNCC 4 cut(s) 25, 77, 238, 440
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 3 cut(s) 11, 102, 844
PaeR7I CTCGAG 1 cut(s) 12
PciI ACATGT 2 cut(s) 98, 840
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 2 cut(s) 124, 649
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PscI ACATGT 2 cut(s) 98, 840
PshBI ATTAAT 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 746
PspN4I GGNNCC 4 cut(s) 25, 77, 238, 440
PspPI GGNCC 1 cut(s) 824
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 2 cut(s) 588, 845
RsaNI GTAC 2 cut(s) 587, 844
RseI CAYNNNNRTG 2 cut(s) 309, 490
SaqAI TTAA 5 cut(s) 116, 398, 627, 681, 837
SatI GCNGC 2 cut(s) 123, 648
Sau3AI GATC 5 cut(s) 221, 377, 421, 750, 754
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 1 cut(s) 185
SduI GDGCHC 2 cut(s) 261, 558
SfaNI GCATC 4 cut(s) 313, 369, 379, 545
SfcI CTRYAG 2 cut(s) 213, 506
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 824
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 2 cut(s) 309, 490
SmlI CTYRAG 2 cut(s) 12, 680
SmoI CTYRAG 2 cut(s) 12, 680
Sse9I AATT 3 cut(s) 126, 521, 609
SsiI CCGC 2 cut(s) 706, 783
SspI AATATT 1 cut(s) 531
SspMI CTAG 4 cut(s) 185, 375, 498, 651
TaaI ACNGT 2 cut(s) 820, 828
TaiI ACGT 1 cut(s) 431
TaqI TCGA 3 cut(s) 13, 224, 753
TasI AATT 3 cut(s) 126, 521, 609
TatI WGTACW 2 cut(s) 586, 843
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 5 cut(s) 116, 398, 627, 681, 837
Tru9I TTAA 5 cut(s) 116, 398, 627, 681, 837
TscAI CASTG 1 cut(s) 823
TseI GCWGC 2 cut(s) 122, 647
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 1 cut(s) 823
Vha464I CTTAAG 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 824
VspI ATTAAT 1 cut(s) 116
XagI CCTNNNNNAGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 521
XbaI TCTAGA 1 cut(s) 374
XceI RCATGY 3 cut(s) 11, 102, 844
XhoI CTCGAG 1 cut(s) 12
XspI CTAG 4 cut(s) 185, 375, 498, 651
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.