pycom12g10720

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015655
Physical Location & Seq
Reverse (-)
12780443 .. 12783032
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2523 bp
ATGGATATACCTGTCAACCTAAGCCTGCAAACACCACCTCCCACACCCAAACAGCTCCAAATCCAAAACCCAAAACCAGAAGACTGGAACTTGATCATAAAGCAACACGCCAGGCTAAAAAATGACAGTGCAATCCTCTCAACATATACCCAGATGGAATCTCTTGGAGTGGCACTGGATAGCGCCTCTCTGCCTCTGGTTCTCAAGGCATGTGCGAGGCTGGGCGCCGTTGAGAGAGGCAAGGGAATACATTCGAGCATTCGGAACACGGGTCTGATGAAAGATGTTAGAATTGGGACTGCCCTTGTCGATTTTTACTTCAAAGGCGGGTTTGTTGATGATGCAGTTGACGTGTTTGATGAAATGAAGGAGAGAGATTTGGTTTTGTGGAATGCTTTGATACATGGGTATGTGGGGTGTTGTTGTTACCGGGAGGCTGTGTTGTTGTTTTTGCAGATGCAGAATGAGGGATTGAGACCGAATTCACGTAGTGTGGTTGCATTGCTTTTGGCGTGTAGGGAGGTTTCGGAGTTGAGATCAGGAAAGGAGATACATGGGTTTGGTTTGAGGAATGGACTCCTTGATCTGGATGCTCATGTGGGTACTGCATTGATTGGGTTTTATCTGAGATTCGACATCAAAATGTCGCGCCTAACGTTTGATTCGATGGTTGTGAGGAACATTGTTAGTTGGAATGCAATAATTACCGGTTATGTTAATGTTGGGGAGCACCTGATGGCCTTGAAGCTTTTTTTGCAGATGCTTGCGGATGGTGTTAAGTTCGACTCTACTACACTGCTGGTTGTTATTCAAGCCTGTGCAGGAATTGGATCTATTGAACTGGGCAGACAAATTCATCAAATGGTTATCAAGAATAGTTACAGTGGTCGATCTGTTCACGTTATCCCCAACCGCGATGTTGCTTTGTGGAACTCCATGATATCTGCATATGTTGAATATGGCTTTTATGAGCAAGCTTTGAGCTTGTTTTCTAGAATGCGAATAGAGGGAATCAAGGAGGACGAAAGAACTATTGTTGTAATGTTGTCGGTGTGTGAAAATTTAGTTGATGGCTTGAGGAAGGGTAAAAGTTTGCATGCTCTAGCGAGGAAGAGTGGGATGAAAATCGATGTTTCCCTGGGGAATAGATTGTTGAATATGTATGCTGAGCTGAACTGCGTTGAATTTGTTCAGAAGGTTTTTGCTGAGATGAAAGATTCAGACGTTATCTCATGGAATACTCTCATCCGGGCATTGGCCTGCAATGGATTACAAGACGAAGCATGGAAAATGTTTGCGGTGATGCGAGATTCTGAAACTAAGCCTAACTCGCACACAATAATCTCTATCCTCGCTATTTGTGAAGATGGAACTTGTGTAAATACAGTGCAAGCAATTCACGGTTTTGTGATAAAACATGGGATTGAAGTTGACCTCCCTTTAAACACTGCACTAACAGATATGTATATGAATTGCGGTGAAGAAGCAACAGCTAGAACTTTATTTGAGGGATGTTCCAGCAGAGACGTGATTGCATGGAATTCTTTGATTGCCAGTTACATCAGGAACAATGAAATCGACAAAGCTCAGTTACTCTTTAGCCGTATGGTTGTAGAAGTGAAACCCAACTCGGTGACGATCATAAATATTCTATCATCATGCACCCAACTTGCCTCTCTGCCTCTAGGTCAATGCTTGCATGCTTATGCAACTAGAAGGCAACTCTCTTTTGGTTTTGATTTACCTCTTGCAAATGCTTTTACATCAATGTATGCAAGAAGCGGGAGTATGCAAAATGCTGAAAATATCTTTAGAATTTTACCGACGAGGGATATTATTTCATGGAATGCCTTGATTACTGGGTACAGCATGCACGGTCAAGGATATGATGCTATTCGTGCGTTCTCACGAGTGATACAAGATGGTTTCCGTCCAAATGGGGCAACTTTTGTAGCTGTTCTATCTGCTTGCAGGCATTCTGGTTTGATAGAGATAGGATTGCAGCTTTTTCACATTATGGTACATGATTTTAAGATATCACCTGAGCTTGTTCACTATGGTTGTGTTGTTGACCTTCTTGGTCGCGCAGGCCGATTAAATGAAGCTAAAGAGTTCATCGAATCAATGCCTATTGAACCGGATGCATCAGTGTGGAGAGCCTTGCTCAATGCTTGTCGGATTCATTCTGCCACTGAGTTAGTTGGAACTGTCTTTGAAAAACTTGTCGAATTAGAACCCATGAATGCAGGGAATTATGTTTTGGTATCTAATATATACGCTGCAGCAGGGCTGTGGTTAGAGGTTAGGCAGACAAGAACAATGCTCAGGGAAAAGGGTTTAAAACAGCCTCCGGGAATAAGTTGGATTGTTGTAAAAAGTCAGGTTCACTGTTTTGTTGCCTCAGACACATCACACCTTCAATCCGACGAAATTTATTTAATCTTAAACTCACTTTCAGTCCTAATCAAAGAAAGTGGATATATTCCTGATCTTCAATGGGTTTTCCGAGATGAAGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

841

Amino Acids

93.58

Weight (kDa)

6.26

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 126 - 171 4.4e-07 PPR repeat family
PPR_2 PF13041 226 - 274 8.8e-10 PPR repeat family
PPR_2 PF13041 306 - 352 8.5e-08 PPR repeat family
PPR PF01535 310 - 338 1.7e-06 PPR repeat
PPR_2 PF13041 408 - 451 1.5e-08 PPR repeat family
PPR_2 PF13041 508 - 554 9.3e-07 PPR repeat family
PPR_2 PF13041 610 - 657 1.7e-06 PPR repeat family
E_motif PF20431 728 - 789 7.9e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g16860
malus_domestica MD12G1106700.v1.1
prunus_persica Prupe.7G125600_v2.0.a1
pyrus_communis pycom12g10720
rosa_chinensis RchiOBHm_Chr3g0470881
rosa_laevigata RLG00000024237
rosa_multiflora Rmu_sc0013860.1_g000005
rosa_roxburghii Rroxscaffold_1G00027940 Rroxscaffold_4G00331780 Rroxscaffold_6G00410450
rosa_rugosa Rorug03G0113300
rosa_samantha Rh3AG163100 Rh3BG188500 Rh3CG178500 Rh3DG187600
rosa_wichuraiana Rw3G015360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccII CGCG 3 cut(s) 649, 915, 2085
AciI CCGC 6 cut(s) 327, 767, 913, 1298, 1476, 1782
AclI AACGTT 1 cut(s) 656
AclWI GGATC 1 cut(s) 838
AcsI RAATTY 7 cut(s) 481, 852, 1060, 1184, 1540, 1815, 2430
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 3 cut(s) 604, 1865, 2022
AfiI CCNNNNNNNGG 2 cut(s) 586, 1255
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 707
AjiI CACGTC 2 cut(s) 352, 1528
AjnI CCWGG 2 cut(s) 110, 1137
AjuI GAANNNNNNNTTGG 2 cut(s) 2243, 2275
Alw21I GWGCWC 1 cut(s) 732
Alw26I GTCTC 2 cut(s) 469, 1518
AlwI GGATC 1 cut(s) 838
AoxI GGCC 3 cut(s) 738, 1257, 2089
ApeKI GCWGC 3 cut(s) 2002, 2279, 2282
ApoI RAATTY 7 cut(s) 481, 852, 1060, 1184, 1540, 1815, 2430
AsiGI ACCGGT 1 cut(s) 707
Asp700I GAANNNNTTC 2 cut(s) 250, 1188
AspLEI GCGC 4 cut(s) 185, 227, 651, 2087
AsuC2I CCSGG 3 cut(s) 431, 1250, 2352
AsuHPI GGTGA 4 cut(s) 1312, 1490, 1645, 2031
BaeI ACNNNNGTAYC 4 cut(s) 392, 425, 542, 575
BanI GGYRCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 1908
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 2014, 2266, 2294
BccI CCATC 7 cut(s) 148, 661, 730, 764, 1064, 1361, 1916
BceAI ACGGC 2 cut(s) 212, 1587
BciT130I CCWGG 2 cut(s) 112, 1139
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 3 cut(s) 431, 1250, 2352
BcoDI GTCTC 2 cut(s) 469, 1518
BfaI CTAG 5 cut(s) 993, 1103, 1494, 1685, 1713
BfmI CTRYAG 1 cut(s) 2280
BfoI RGCGCY 2 cut(s) 186, 228
BisI GCNGC 3 cut(s) 2003, 2280, 2283
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 3 cut(s) 2004, 2281, 2284
Bme1390I CCNGG 5 cut(s) 112, 431, 1139, 1250, 2352
BmgBI CACGTC 2 cut(s) 352, 1528
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 5 cut(s) 112, 431, 1139, 1250, 2352
BmrI ACTGGG 2 cut(s) 851, 1869
BmsI GCATC 8 cut(s) 331, 447, 580, 750, 1293, 1879, 2131, 2153
BmuI ACTGGG 2 cut(s) 851, 1869
BpiI GAAGAC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 2148, 2180
Bpu10I CCTNAGC 3 cut(s) 20, 2043, 2324
Bpu1102I GCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 2 cut(s) 188, 1096
BpuMI CCSGG 3 cut(s) 431, 1250, 2352
Bsa29I ATCGAT 1 cut(s) 1128
BsaAI YACGTR 1 cut(s) 488
BsaBI GATNNNNATC 1 cut(s) 1124
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 1137, 1138
BsaWI WCCGGW 2 cut(s) 707, 2137
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 586, 1255
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 5 cut(s) 89, 180, 846, 1554, 1864
Bse3DI GCAATG 2 cut(s) 500, 1270
Bse8I GATNNNNATC 1 cut(s) 1124
BseBI CCWGG 2 cut(s) 112, 1139
BseCI ATCGAT 1 cut(s) 1128
BseDI CCNNGG 2 cut(s) 1137, 1138
BseGI GGATG 6 cut(s) 595, 775, 1125, 1245, 1517, 2146
BseJI GATNNNNATC 1 cut(s) 1124
BseLI CCNNNNNNNGG 2 cut(s) 586, 1255
BseMI GCAATG 2 cut(s) 500, 1270
BseMII CTCAG 8 cut(s) 617, 1158, 1197, 1601, 2034, 2184, 2338, 2415
BseNI ACTGG 5 cut(s) 89, 180, 846, 1554, 1864
BseXI GCAGC 3 cut(s) 2014, 2266, 2294
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 840, 1434
Bsh1236I CGCG 3 cut(s) 649, 915, 2085
BshFI GGCC 3 cut(s) 740, 1259, 2091
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 1128
BsiHKAI GWGCWC 1 cut(s) 732
BsiSI CCGG 5 cut(s) 430, 708, 1249, 2138, 2351
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 586, 1255
BsmAI GTCTC 2 cut(s) 469, 1518
BsmBI CGTCTC 1 cut(s) 1518
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 7 cut(s) 258, 397, 700, 1002, 1852, 1975, 2248
BsnI GGCC 3 cut(s) 740, 1259, 2091
Bso31I GGTCTC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 732
Bsp143I GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
Bsp1720I GCTNAGC 1 cut(s) 1167
BspACI CCGC 6 cut(s) 327, 767, 913, 1298, 1476, 1782
BspANI GGCC 3 cut(s) 740, 1259, 2091
BspCNI CTCAG 8 cut(s) 618, 1159, 1198, 1600, 2035, 2185, 2337, 2414
BspDI ATCGAT 1 cut(s) 1128
BspFNI CGCG 3 cut(s) 649, 915, 2085
BspLI GGNNCC 1 cut(s) 226
BspMAI CTGCAG 1 cut(s) 2284
BspPI GGATC 1 cut(s) 838
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 2 cut(s) 500, 1270
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 5 cut(s) 89, 180, 846, 1554, 1864
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 1137, 1138
BssMI GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 1908
Bst2BI CACGAG 1 cut(s) 1908
Bst2UI CCWGG 2 cut(s) 112, 1139
Bst4CI ACNGT 7 cut(s) 128, 884, 1387, 1403, 1877, 2209, 2390
Bst6I CTCTTC 2 cut(s) 1106, 2508
BstACI GRCGYC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 488
BstF5I GGATG 6 cut(s) 595, 775, 1125, 1245, 1517, 2146
BstFNI CGCG 3 cut(s) 649, 915, 2085
BstH2I RGCGCY 2 cut(s) 186, 228
BstHHI GCGC 4 cut(s) 185, 227, 651, 2087
BstKTI GATC 7 cut(s) 96, 539, 586, 833, 893, 1641, 2491
BstMAI GTCTC 2 cut(s) 469, 1518
BstMBI GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
BstMWI GCNNNNNNNGC 3 cut(s) 754, 1330, 1898
BstNI CCWGG 2 cut(s) 112, 1139
BstNSI RCATGY 4 cut(s) 213, 1100, 1703, 1873
BstSCI CCNGG 5 cut(s) 110, 429, 1137, 1248, 2350
BstSFI CTRYAG 1 cut(s) 2280
BstUI CGCG 3 cut(s) 649, 915, 2085
BstV1I GCAGC 3 cut(s) 2014, 2266, 2294
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 830
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 1 cut(s) 830
Bsu15I ATCGAT 1 cut(s) 1128
BsuRI GGCC 3 cut(s) 740, 1259, 2091
BsuTUI ATCGAT 1 cut(s) 1128
BtgZI GCGATG 1 cut(s) 930
BtrI CACGTC 2 cut(s) 352, 1528
BtsCI GGATG 6 cut(s) 595, 775, 1125, 1245, 1517, 2146
BtsI GCAGTG 2 cut(s) 794, 1446
BtsIMutI CAGTG 9 cut(s) 133, 173, 794, 889, 1392, 1446, 2154, 2190, 2386
CfoI GCGC 4 cut(s) 185, 227, 651, 2087
Cfr10I RCCGGY 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 1128
Csp6I GTAC 3 cut(s) 603, 1864, 2021
CspAI ACCGGT 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 2455, 2490
CviQI GTAC 3 cut(s) 603, 1864, 2021
DinI GGCGCC 1 cut(s) 226
DpnI GATC 7 cut(s) 95, 538, 585, 832, 892, 1640, 2490
DpnII GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
DraI TTTAAA 2 cut(s) 1443, 2340
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 1106, 2508
EarI CTCTTC 2 cut(s) 1106, 2508
Eco31I GGTCTC 1 cut(s) 469
Eco32I GATATC 2 cut(s) 942, 2037
EcoRI GAATTC 2 cut(s) 481, 1540
EcoRII CCWGG 2 cut(s) 110, 1137
EcoRV GATATC 2 cut(s) 942, 2037
EcoT22I ATGCAT 1 cut(s) 2146
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 1518
FaqI GGGAC 1 cut(s) 310
FauI CCCGC 2 cut(s) 320, 1775
FauNDI CATATG 1 cut(s) 949
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 2003, 2280, 2283
FokI GGATG 6 cut(s) 602, 782, 1132, 1232, 1524, 2153
Fsp4HI GCNGC 3 cut(s) 2003, 2280, 2283
FspBI CTAG 5 cut(s) 993, 1103, 1494, 1685, 1713
GlaI GCGC 4 cut(s) 184, 226, 650, 2086
GluI GCNGC 3 cut(s) 2003, 2280, 2283
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 186, 228
HaeIII GGCC 3 cut(s) 740, 1259, 2091
HapII CCGG 5 cut(s) 430, 708, 1249, 2138, 2351
HhaI GCGC 4 cut(s) 185, 227, 651, 2087
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 4 cut(s) 183, 225, 649, 2085
HinP1I GCGC 4 cut(s) 183, 225, 649, 2085
HincII GTYRAC 4 cut(s) 16, 349, 1432, 2071
HindII GTYRAC 4 cut(s) 16, 349, 1432, 2071
HindIII AAGCTT 2 cut(s) 746, 975
HpaII CCGG 5 cut(s) 430, 708, 1249, 2138, 2351
HphI GGTGA 4 cut(s) 1312, 1490, 1645, 2031
Hpy166II GTNNAC 7 cut(s) 16, 349, 898, 1432, 2053, 2071, 2386
Hpy188III TCNNGA 7 cut(s) 540, 587, 871, 993, 1564, 1908, 2486
Hpy8I GTNNAC 7 cut(s) 16, 349, 898, 1432, 2053, 2071, 2386
Hpy99I CGWCG 2 cut(s) 1828, 2429
HpyAV CCTTC 6 cut(s) 361, 1075, 1189, 1710, 2084, 2426
HpyCH4III ACNGT 7 cut(s) 128, 884, 1387, 1403, 1877, 2209, 2390
HpyCH4IV ACGT 6 cut(s) 351, 487, 656, 900, 1224, 1527
HpyF10VI GCNNNNNNNGC 3 cut(s) 754, 1330, 1898
HpySE526I ACGT 6 cut(s) 351, 487, 656, 900, 1224, 1527
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 4 cut(s) 183, 225, 649, 2085
KasI GGCGCC 1 cut(s) 224
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
LmnI GCTCC 2 cut(s) 60, 727
Lsp1109I GCAGC 3 cut(s) 2014, 2266, 2294
LweI GCATC 8 cut(s) 331, 447, 580, 750, 1293, 1879, 2131, 2153
MaeI CTAG 5 cut(s) 993, 1103, 1494, 1685, 1713
MaeII ACGT 6 cut(s) 351, 487, 656, 900, 1224, 1527
MaeIII GTNAC 5 cut(s) 425, 878, 1556, 1590, 1633
MalI GATC 7 cut(s) 95, 538, 585, 832, 892, 1640, 2490
MboI GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
MboII GAAGA 5 cut(s) 92, 1123, 1376, 1493, 2483
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 1 cut(s) 732
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 570, 779
MmeI TCCRAC 5 cut(s) 671, 2156, 2182, 2342, 2448
Mph1103I ATGCAT 1 cut(s) 2146
MroXI GAANNNNTTC 2 cut(s) 250, 1188
MseI TTAA 8 cut(s) 717, 777, 1442, 2031, 2096, 2339, 2438, 2444
MslI CAYNNNNRTG 4 cut(s) 408, 641, 1704, 2149
MspI CCGG 5 cut(s) 430, 708, 1249, 2138, 2351
MspR9I CCNGG 5 cut(s) 112, 431, 1139, 1250, 2352
Mva1269I GAATGC 7 cut(s) 258, 397, 700, 1002, 1852, 1975, 2248
MvaI CCWGG 2 cut(s) 112, 1139
MvnI CGCG 3 cut(s) 649, 915, 2085
MwoI GCNNNNNNNGC 3 cut(s) 754, 1330, 1898
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 3 cut(s) 431, 1250, 2352
NdeI CATATG 1 cut(s) 949
NdeII GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 1633
NsiI ATGCAT 1 cut(s) 2146
NspI RCATGY 4 cut(s) 213, 1100, 1703, 1873
PaeI GCATGC 3 cut(s) 1100, 1703, 1873
PasI CCCWGGG 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 3 cut(s) 653, 662, 2089
PctI GAATGC 7 cut(s) 258, 397, 700, 1002, 1852, 1975, 2248
PdmI GAANNNNTTC 2 cut(s) 250, 1188
PfeI GAWTC 8 cut(s) 158, 630, 662, 1011, 1217, 1310, 2120, 2179
PfoI TCCNGGA 1 cut(s) 2350
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 3 cut(s) 2004, 2281, 2284
PleI GAGTC 2 cut(s) 570, 779
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 2 cut(s) 570, 779
Ppu21I YACGTR 1 cut(s) 488
Psp1406I AACGTT 1 cut(s) 656
Psp6I CCWGG 2 cut(s) 110, 1137
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 110, 1137
PspN4I GGNNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 2284
PsuI RGATCY 1 cut(s) 830
RsaI GTAC 3 cut(s) 604, 1865, 2022
RsaNI GTAC 3 cut(s) 603, 1864, 2021
RseI CAYNNNNRTG 4 cut(s) 408, 641, 1704, 2149
SaqAI TTAA 8 cut(s) 717, 777, 1442, 2031, 2096, 2339, 2438, 2444
SatI GCNGC 3 cut(s) 2003, 2280, 2283
Sau3AI GATC 7 cut(s) 93, 536, 583, 830, 890, 1638, 2488
SchI GAGTC 2 cut(s) 570, 779
ScrFI CCNGG 5 cut(s) 112, 431, 1139, 1250, 2352
SduI GDGCHC 1 cut(s) 732
SfaNI GCATC 8 cut(s) 331, 447, 580, 750, 1293, 1879, 2131, 2153
SfcI CTRYAG 1 cut(s) 2280
SfoI GGCGCC 1 cut(s) 226
SmiMI CAYNNNNRTG 4 cut(s) 408, 641, 1704, 2149
SmlI CTYRAG 2 cut(s) 203, 1075
SmoI CTYRAG 2 cut(s) 203, 1075
SphI GCATGC 3 cut(s) 1100, 1703, 1873
SsiI CCGC 6 cut(s) 327, 767, 913, 1298, 1476, 1782
SspDI GGCGCC 1 cut(s) 224
SspI AATATT 1 cut(s) 1648
SspMI CTAG 5 cut(s) 993, 1103, 1494, 1685, 1713
StyD4I CCNGG 5 cut(s) 110, 429, 1137, 1248, 2350
TaaI ACNGT 7 cut(s) 128, 884, 1387, 1403, 1877, 2209, 2390
TaiI ACGT 6 cut(s) 354, 490, 659, 903, 1227, 1530
TaqII GACCGA 1 cut(s) 493
TfiI GAWTC 8 cut(s) 158, 630, 662, 1011, 1217, 1310, 2120, 2179
Tru1I TTAA 8 cut(s) 717, 777, 1442, 2031, 2096, 2339, 2438, 2444
Tru9I TTAA 8 cut(s) 717, 777, 1442, 2031, 2096, 2339, 2438, 2444
TscAI CASTG 9 cut(s) 133, 180, 801, 889, 1392, 1453, 2154, 2197, 2393
TseFI GTSAC 1 cut(s) 1633
TseI GCWGC 3 cut(s) 2002, 2279, 2282
Tsp45I GTSAC 1 cut(s) 1633
TspGWI ACGGA 1 cut(s) 1919
TspRI CASTG 9 cut(s) 133, 180, 801, 889, 1392, 1453, 2154, 2197, 2393
XapI RAATTY 7 cut(s) 481, 852, 1060, 1184, 1540, 1815, 2430
XbaI TCTAGA 1 cut(s) 992
XceI RCATGY 4 cut(s) 213, 1100, 1703, 1873
XmnI GAANNNNTTC 2 cut(s) 250, 1188
XspI CTAG 5 cut(s) 993, 1103, 1494, 1685, 1713
Zsp2I ATGCAT 1 cut(s) 2146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.