pycom12g11740

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015654
Physical Location & Seq
Reverse (-)
14139310 .. 14139849
540 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGGCGTCGAGGAATTCCTCCTTTTATGGCAAACCCAGTTCCATTTTTCCAGCCACGTCGACGGACGACAGCCCAATTGGCTCGGATGGGCTATTCGATTTCGACGAGGCGGATATCTGGAACTCATCATCCAGCCCAGTTGCAGAGTCCAAGAAGAGCTCAGTTCCCAGCCTCAGAGAGCCGAAGAAAACGGGGAGGAAGGTGATGGTGATGAGCATGGGCGTGGCGGAGATTGGTGGCGCTGCCAAGGTGGTGACGTCATCGTCGTTGCCAGTGAACATTCCGGACTGCTCCAAGATTCTCAAGGAGGGGTACAAAGAGCATAGGAAGCTGGAAAGTGGTGAAGGCGGCGGTGGGGATTTCTACGGTGCCGACGACGACAACGACGGCGGGTATGGGAGCGTCCCACCTCACGAGTACTTGGCGAGGATGAGAGGGGCTTCGTTTTCTGTTCACGAAGGGATTGGGAGGACTCTGAAAGGCAGAGATTTGAGGCGGGTGAGAAACGCAATTTGGGAAAAAGTTGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

180

Amino Acids

19.21

Weight (kDa)

5.96

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 63 - 179 1.6e-31 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
AatII GACGTC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 6 cut(s) 110, 227, 348, 351, 390, 496
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 2 cut(s) 5, 257
AfaI GTAC 2 cut(s) 314, 419
AjiI CACGTC 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 159, 331
AluI AGCT 2 cut(s) 159, 331
Alw21I GWGCWC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 242
AsuHPI GGTGA 5 cut(s) 214, 220, 265, 353, 511
AsuII TTCGAA 1 cut(s) 531
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 413
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 80, 199
BceAI ACGGC 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 2 cut(s) 243, 349
BlsI GCNGC 2 cut(s) 244, 350
BmcAI AGTACT 1 cut(s) 419
BmgBI CACGTC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 370
BmrI ACTGGG 2 cut(s) 30, 131
BmuI ACTGGG 2 cut(s) 30, 131
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 287
BsaHI GRCGYC 2 cut(s) 5, 257
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 283
Bse1I ACTGG 3 cut(s) 36, 137, 272
BseAI TCCGGA 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 91, 128, 435
BseMII CTCAG 2 cut(s) 174, 187
BseNI ACTGG 3 cut(s) 36, 137, 272
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 283
BspACI CCGC 6 cut(s) 110, 227, 348, 351, 390, 496
BspCNI CTCAG 2 cut(s) 173, 186
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 370
BspQI GCTCTTC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 368
BsrI ACTGG 3 cut(s) 36, 137, 272
BssECI CCNNGG 1 cut(s) 246
BssNI GRCGYC 2 cut(s) 5, 257
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 2 cut(s) 5, 257
BstBI TTCGAA 1 cut(s) 531
BstDEI CTNAG 2 cut(s) 160, 173
BstF5I GGATG 3 cut(s) 91, 128, 435
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 78, 328
BstV1I GCAGC 1 cut(s) 229
BtrI CACGTC 1 cut(s) 57
BtsCI GGATG 3 cut(s) 91, 128, 435
BtsIMutI CAGTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 242
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 313, 418
CviAII CATG 1 cut(s) 217
CviQI GTAC 2 cut(s) 313, 418
DdeI CTNAG 2 cut(s) 160, 173
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 125, 242
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 13
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 27, 218, 324, 396
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 216
FauI CCCGC 2 cut(s) 383, 489
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 243, 349
FokI GGATG 3 cut(s) 98, 115, 442
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 243, 349
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 243, 349
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 1 cut(s) 284
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 2 cut(s) 5, 257
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 146, 298, 472
HpaII CCGG 1 cut(s) 284
HphI GGTGA 5 cut(s) 214, 220, 265, 353, 511
Hpy166II GTNNAC 3 cut(s) 60, 277, 454
Hpy188I TCNGA 3 cut(s) 85, 176, 477
Hpy188III TCNNGA 4 cut(s) 118, 284, 413, 455
Hpy8I GTNNAC 3 cut(s) 60, 277, 454
Hpy99I CGWCG 8 cut(s) 10, 61, 64, 107, 268, 377, 380, 389
HpyAV CCTTC 3 cut(s) 193, 338, 452
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 2 cut(s) 56, 257
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 328
HpyF3I CTNAG 2 cut(s) 160, 173
HpySE526I ACGT 2 cut(s) 56, 257
Hsp92I GRCGYC 2 cut(s) 5, 257
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 240
Kpn2I TCCGGA 1 cut(s) 283
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 296, 399
LpnPI CCDG 9 cut(s) 49, 63, 103, 145, 150, 181, 285, 297, 317
Lsp1109I GCAGC 1 cut(s) 229
MaeII ACGT 2 cut(s) 56, 257
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 2 cut(s) 166, 196
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 3 cut(s) 13, 75, 510
MlyI GAGTC 2 cut(s) 155, 466
MroI TCCGGA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 284
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 78, 328
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 253
NspV TTCGAA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 263, 372, 381
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 244, 350
PleI GAGTC 2 cut(s) 154, 466
PpsI GAGTC 2 cut(s) 154, 466
Psp124BI GAGCTC 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 370
RsaI GTAC 2 cut(s) 314, 419
RsaNI GTAC 2 cut(s) 313, 418
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 161
SalI GTCGAC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 149
SatI GCNGC 2 cut(s) 243, 349
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 2 cut(s) 155, 466
SduI GDGCHC 1 cut(s) 161
SetI ASST 7 cut(s) 59, 161, 204, 252, 260, 333, 412
SfuI TTCGAA 1 cut(s) 531
SgrDI CGTCGACG 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 13, 75, 510
SsiI CCGC 6 cut(s) 110, 227, 348, 351, 390, 496
SstI GAGCTC 1 cut(s) 161
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 2 cut(s) 59, 260
TaqI TCGA 5 cut(s) 8, 59, 96, 102, 531
TasI AATT 3 cut(s) 13, 75, 510
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 298
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 279
XapI RAATTY 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.