Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0019326

Physical Location & Seq

Genomic Coordinates Reverse (-)

22616553 .. 22617232

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACCACTACCAAATTCTTTTTCGTTAACTTCAGCAACTTTGTACTGTTTGGTTCTATTTGTACATTAGTATCCTGCACTATCATATCATTAGTGGAACTCTGGAATTGGGGCTCTATCTTGGTATTTCACTTTCTTTGTCCCATTTGTTTCTTTGGATTCTATTTGCGGTCTAACTATTTTAATCTCCTATTCGTAGCAATTGGTGCAGTATTTGCTGCAACGGATTCTGTTTGCACGTTGCAGGTGCTCAATCAAGAGGAGACACCTTTACCATACAGTCTTGTGTTCGGGGAGGGTGTTGTTAACGATGAGACATCTGCGGTCCTTTTCAATGCTATTCAGAGCTTTGATCTCACCCACCTTGATTCCGGCTTTGCCTTGCACCTTCTCGGAAACTTCTTATATTTGTTTTTCGCAAGCACGGGTCTAGGGAGATTAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099402 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

150

Amino Acids

16.65

Weight (kDa)

4.58

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	7 - 144	7.2e-07	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019326)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g21460
rosa_chinensis	RchiOBHm_Chr2g0132071
rosa_multiflora	Rmu_sc0008453.1_g000012 Rmu_sc0014425.1_g000010
rosa_rugosa	Rorug02G0638200 Rorug05G0316800
rosa_samantha	Rh3CG318500 Rh4AG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	2 cut(s)	169, 323
AcsI	RAATTY	2 cut(s)	14, 442
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	2 cut(s)	45, 64
AgsI	TTSAA	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	348
AluI	AGCT	1 cut(s)	348
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	257, 308
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	14, 442
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	325
BaeI	ACNNNNGTAYC	2 cut(s)	54, 87
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	205
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	257, 308
BfaI	CTAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	2 cut(s)	61, 228
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	126
BsmAI	GTCTC	2 cut(s)	257, 308
BsmFI	GGGAC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	116, 252
Bsp1407I	TGTACA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	2 cut(s)	169, 323
BspMI	ACCTGC	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	62
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	48, 281
BstAPI	GCANNNNNTGC	2 cut(s)	206, 215
BstAUI	TGTACA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	421
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	257, 308
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstV1I	GCAGC	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	44, 63
CviJI	RGCY	3 cut(s)	114, 348, 375
CviKI_1	RGCY	3 cut(s)	114, 348, 375
CviQI	GTAC	2 cut(s)	44, 63
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	16
EcoT38I	GRGCYC	1 cut(s)	116
FaiI	YATR	3 cut(s)	86, 277, 406
FaqI	GGGAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	1 cut(s)	219
HapII	CCGG	1 cut(s)	372
HincII	GTYRAC	2 cut(s)	28, 307
HindII	GTYRAC	2 cut(s)	28, 307
HinfI	GANTC	3 cut(s)	159, 227, 368
HpaI	GTTAAC	2 cut(s)	28, 307
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	28, 307
Hpy188I	TCNGA	2 cut(s)	345, 395
Hpy188III	TCNNGA	2 cut(s)	103, 257
Hpy8I	GTNNAC	2 cut(s)	28, 307
HpyAV	CCTTC	1 cut(s)	398
HpyCH4III	ACNGT	2 cut(s)	48, 281
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	78, 209, 221, 237, 244, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpySE526I	ACGT	1 cut(s)	239
KspAI	GTTAAC	2 cut(s)	28, 307
Kzo9I	GATC	1 cut(s)	352
LpnPI	CCDG	4 cut(s)	88, 88, 230, 385
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	239
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	2 cut(s)	116, 252
MluCI	AATT	4 cut(s)	14, 106, 201, 442
MnlI	CCTC	2 cut(s)	253, 289
MseI	TTAA	4 cut(s)	27, 183, 306, 440
MspI	CCGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NdeII	GATC	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	159, 227, 368
PkrI	GCNGC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	2 cut(s)	45, 64
RsaNI	GTAC	2 cut(s)	44, 63
SaqAI	TTAA	4 cut(s)	27, 183, 306, 440
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	325
SduI	GDGCHC	2 cut(s)	116, 252
SetI	ASST	6 cut(s)	242, 249, 271, 350, 366, 390
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	4 cut(s)	14, 106, 201, 442
SsiI	CCGC	2 cut(s)	169, 323
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	48, 281
TaiI	ACGT	1 cut(s)	242
TasI	AATT	4 cut(s)	14, 106, 201, 442
TatI	WGTACW	2 cut(s)	43, 62
TfiI	GAWTC	3 cut(s)	159, 227, 368
Tru1I	TTAA	4 cut(s)	27, 183, 306, 440
Tru9I	TTAA	4 cut(s)	27, 183, 306, 440
TseI	GCWGC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	2 cut(s)	14, 442
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.