Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008453.1

Orthogroup ID

OG0019326

Physical Location & Seq

Genomic Coordinates Forward (+)

39717 .. 43494

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008453.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcctatgtcgccattatgccacctttgtggcgtcaccatactaccatccatggtaatggtgcagtacccatcttctctaggtggcaccatgtcctcttgtggggacatcaatccttgcaggcatgtttgcagcagacacgctctcaaatactcggctcagatgctcttcaagctccgaatctccaggctctctccctcactcttctgttctgttcgcgagtcatggtgggtcgagccctgaattccgaccaccttggacagcccatacgagccgccgagcaaattacgattcagtttcgatatcttggattaatccctcgccctctgagcgtctctctctgttgcggccaccaagatgaaggcttttctctgttcgatttctcctctctctctctctctttgcacttcaacatcgccaacctcaccaccggttgccagaagaagttggagatcgatgacgaccataaactgagtgcctcttctgacaagaggatctcacaggaattgagtggagatgcctttggagaggctggtaaatatgcaaaagcttccaaattgaagctgaaagagtacaaacaggttgaaaagctgattttggttggtatcagcattggagtttcttggaatgttcttcctgaatgggaaattgcgaaacatctctctcttcctccagtcaagctacactgcagtatgcttgctgaggatgccatcaaggcagctgttaaagactatcaaacaaagctggctaaatcatcaaatggcagctcagaggcctcacctgtggagaaggctgctaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

268

Amino Acids

29.43

Weight (kDa)

8.69

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019326)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g21460
rosa_chinensis	RchiOBHm_Chr2g0132071
rosa_multiflora	Rmu_sc0008453.1_g000012 Rmu_sc0014425.1_g000010
rosa_rugosa	Rorug02G0638200 Rorug05G0316800
rosa_samantha	Rh3CG318500 Rh4AG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccII	CGCG	1 cut(s)	220
AciI	CCGC	2 cut(s)	276, 348
AclWI	GGATC	1 cut(s)	503
AcoI	YGGCCR	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	2 cut(s)	69, 575
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	173, 412, 562, 587
AjnI	CCWGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	8 cut(s)	176, 551, 565, 592, 682, 722, 745, 768
AluI	AGCT	8 cut(s)	176, 551, 565, 592, 682, 722, 745, 768
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	3 cut(s)	3, 349, 774
ApeKI	GCWGC	4 cut(s)	133, 719, 765, 794
ApoI	RAATTY	1 cut(s)	244
AseI	ATTAAT	1 cut(s)	314
AsiGI	ACCGGT	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	29, 418, 771
BanI	GGYRCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	4 cut(s)	145, 731, 777, 781
BccI	CCATC	3 cut(s)	56, 80, 719
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	6 cut(s)	134, 276, 349, 720, 766, 795
BlsI	GCNGC	6 cut(s)	135, 277, 350, 721, 767, 796
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	154, 508, 697
BplI	GAGNNNNNCTC	2 cut(s)	322, 354
BpmI	CTGGAG	2 cut(s)	170, 657
Bpu10I	CCTNAGC	1 cut(s)	702
Bsa29I	ATCGAT	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	52, 256
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	188
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	52, 256
BseGI	GGATG	2 cut(s)	48, 712
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	5 cut(s)	174, 320, 464, 693, 783
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	376
BseXI	GCAGC	4 cut(s)	145, 731, 777, 781
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	5, 351, 776
BshNI	GGYRCC	1 cut(s)	87
BshTI	ACCGGT	1 cut(s)	431
BshVI	ATCGAT	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	5, 351, 776
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	453, 495
Bsp19I	CCATGG	1 cut(s)	52
Bsp68I	TCGCGA	1 cut(s)	220
BspACI	CCGC	2 cut(s)	276, 348
BspANI	GGCC	3 cut(s)	5, 351, 776
BspCNI	CTCAG	5 cut(s)	173, 321, 465, 694, 782
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	692
BspPI	GGATC	1 cut(s)	503
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	52, 256
BssMI	GATC	2 cut(s)	453, 495
BssNI	GRCGYC	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	52, 256
Bst2UI	CCWGG	1 cut(s)	188
Bst6I	CTCTTC	4 cut(s)	174, 210, 487, 672
BstACI	GRCGYC	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	123, 699, 747
BstDEI	CTNAG	5 cut(s)	160, 329, 473, 702, 769
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	48, 712
BstFNI	CGCG	1 cut(s)	220
BstKTI	GATC	2 cut(s)	456, 498
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	2 cut(s)	453, 495
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 173, 330, 707, 716, 800
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	688
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	4 cut(s)	145, 731, 777, 781
BstX2I	RGATCY	1 cut(s)	495
BstXI	CCANNNNNNTGG	2 cut(s)	30, 59
BstYI	RGATCY	1 cut(s)	495
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	5, 351, 776
BsuTUI	ATCGAT	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	52
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	48, 712
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	685
BtuMI	TCGCGA	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	123, 699, 747
Cfr10I	RCCGGY	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	456
CseI	GACGC	2 cut(s)	23, 322
Csp6I	GTAC	2 cut(s)	68, 574
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	4 cut(s)	53, 92, 126, 226
CviQI	GTAC	2 cut(s)	68, 574
DdeI	CTNAG	5 cut(s)	160, 329, 473, 702, 769
DpnI	GATC	2 cut(s)	455, 497
DpnII	GATC	2 cut(s)	453, 495
EaeI	YGGCCR	1 cut(s)	349
Eam1104I	CTCTTC	4 cut(s)	174, 210, 487, 672
EarI	CTCTTC	4 cut(s)	174, 210, 487, 672
Eco130I	CCWWGG	2 cut(s)	52, 256
Eco147I	AGGCCT	1 cut(s)	776
Eco24I	GRGCYC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	2 cut(s)	52, 256
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	2 cut(s)	52, 256
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	4 cut(s)	56, 95, 129, 229
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	4 cut(s)	52, 91, 125, 225
Fnu4HI	GCNGC	6 cut(s)	134, 276, 349, 720, 766, 795
FokI	GGATG	2 cut(s)	35, 719
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	134, 276, 349, 720, 766, 795
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	6 cut(s)	134, 276, 349, 720, 766, 795
GsuI	CTGGAG	2 cut(s)	170, 657
HaeIII	GGCC	3 cut(s)	5, 351, 776
HapII	CCGG	1 cut(s)	432
HgaI	GACGC	2 cut(s)	23, 322
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	4 cut(s)	56, 95, 129, 229
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	3 cut(s)	181, 222, 292
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	3 cut(s)	29, 418, 771
Hpy188I	TCNGA	6 cut(s)	163, 180, 250, 330, 487, 772
Hpy188III	TCNNGA	2 cut(s)	219, 638
HpyAV	CCTTC	2 cut(s)	356, 784
HpyCH4V	TGCA	6 cut(s)	65, 121, 133, 406, 545, 690
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 173, 330, 707, 716, 800
HpyF3I	CTNAG	5 cut(s)	160, 329, 473, 702, 769
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	4 cut(s)	56, 95, 129, 229
Kzo9I	GATC	2 cut(s)	453, 495
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	181
Lsp1109I	GCAGC	4 cut(s)	145, 731, 777, 781
LweI	GCATC	3 cut(s)	154, 508, 697
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	2 cut(s)	455, 497
MboI	GATC	2 cut(s)	453, 495
MboII	GAAGA	7 cut(s)	67, 161, 197, 454, 474, 626, 659
MflI	RGATCY	1 cut(s)	495
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	5 cut(s)	244, 285, 506, 557, 648
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	273, 429
MseI	TTAA	2 cut(s)	314, 726
MslI	CAYNNNNRTG	3 cut(s)	28, 57, 357
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	6 cut(s)	11, 173, 330, 707, 716, 800
NcoI	CCATGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	453, 495
NlaIII	CATG	4 cut(s)	56, 95, 129, 229
NlaIV	GGNNCC	1 cut(s)	89
NmeAIII	GCCGAG	2 cut(s)	135, 304
NmuCI	GTSAC	1 cut(s)	35
NruI	TCGCGA	1 cut(s)	220
NspI	RCATGY	1 cut(s)	129
OliI	CACNNNNGTG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	181, 292
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	135, 277, 350, 721, 767, 796
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	495
PvuII	CAGCTG	1 cut(s)	722
RruI	TCGCGA	1 cut(s)	220
RsaI	GTAC	2 cut(s)	69, 575
RsaNI	GTAC	2 cut(s)	68, 574
RseI	CAYNNNNRTG	3 cut(s)	28, 57, 357
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	314, 726
SatI	GCNGC	6 cut(s)	134, 276, 349, 720, 766, 795
Sau3AI	GATC	2 cut(s)	453, 495
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	241
SfaNI	GCATC	3 cut(s)	154, 508, 697
SfcI	CTRYAG	1 cut(s)	688
SmiMI	CAYNNNNRTG	3 cut(s)	28, 57, 357
Sse9I	AATT	5 cut(s)	244, 285, 506, 557, 648
SseBI	AGGCCT	1 cut(s)	776
SsiI	CCGC	2 cut(s)	276, 348
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	52, 256
TaqI	TCGA	4 cut(s)	235, 301, 378, 456
TasI	AATT	5 cut(s)	244, 285, 506, 557, 648
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	2 cut(s)	278, 351
TfiI	GAWTC	2 cut(s)	181, 292
Tru1I	TTAA	2 cut(s)	314, 726
Tru9I	TTAA	2 cut(s)	314, 726
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	133, 719, 765, 794
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.