Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014425.1

Orthogroup ID

OG0019326

Physical Location & Seq

Genomic Coordinates Forward (+)

26449 .. 27840

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014425.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggtcgtcgcccatttcctcatctccgcctgtgcaggtaactatttgattcttattctgatactttcagcgtctctctctgttgcggccaccaagatgaaggcttttctctgttcgatttctcctctctctctctctctcctcttcctgggtatcgctgatctaacctccttcgtttgtgttttgcacttcaacatcgccaacctcaccaccggttgccagaagaagttggagatcgatgacgaccataaactgagtgcctcttctgacaagaggatctcacaggaattgagtggatatgccttcggagaggctggtaaatatgcaaaagcttccaaattgaagctgaaagagtacaaacaggttgaaaagctgattttggttggtatcagcattggagtttcttggaatgttgttcttcctgaatgggaaattgcgaaacatctctctcttcctccagtcaagctacactgcagtatgcttgctgaggatgccatcaaggcagctgttaaagactatcaaacaaagctggctaaatcatcaaatggcagctcagaggcctcacctgtggagaaggctgctaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0010467 GO:0016740 GO:0016782 GO:0019538 GO:0019725 GO:0030003 GO:0031974 GO:0036455 GO:0042592 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048037 GO:0048878 GO:0050801 GO:0051536 GO:0051537 GO:0051539 GO:0051540 GO:0051604 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0097428 GO:0098771 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU_N

Protein Analysis

196

Amino Acids

21.04

Weight (kDa)

8.73

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019326)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g21460
rosa_chinensis	RchiOBHm_Chr2g0132071
rosa_multiflora	Rmu_sc0008453.1_g000012 Rmu_sc0014425.1_g000010
rosa_rugosa	Rorug02G0638200 Rorug05G0316800
rosa_samantha	Rh3CG318500 Rh4AG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AciI	CCGC	2 cut(s)	27, 86
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	148
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	193, 343, 368
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	7 cut(s)	332, 346, 373, 466, 506, 529, 552
AluI	AGCT	7 cut(s)	332, 346, 373, 466, 506, 529, 552
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	2 cut(s)	87, 558
ApeKI	GCWGC	3 cut(s)	503, 549, 578
AsiGI	ACCGGT	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	199, 555
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	515, 561, 565
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	26
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	4 cut(s)	87, 504, 550, 579
BlsI	GCNGC	4 cut(s)	88, 505, 551, 580
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	245, 477, 567
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	114, 131
BseXI	GCAGC	3 cut(s)	515, 561, 565
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	89, 560
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	213
BslI	CCNNNNNNNGG	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	78
BsmBI	CGTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	89, 560
Bsp143I	GATC	3 cut(s)	160, 234, 276
BspACI	CCGC	2 cut(s)	27, 86
BspANI	GGCC	2 cut(s)	89, 560
BspCNI	CTCAG	3 cut(s)	246, 478, 566
BspDI	ATCGAT	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	458
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	160, 234, 276
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	3 cut(s)	149, 268, 456
BstC8I	GCNNGC	2 cut(s)	483, 531
BstDEI	CTNAG	3 cut(s)	254, 486, 553
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	3 cut(s)	163, 237, 279
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	160, 234, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 500, 584
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	472
BstV1I	GCAGC	3 cut(s)	515, 561, 565
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	89, 560
BsuTUI	ATCGAT	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	483, 531
Cfr10I	RCCGGY	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	212
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	3 cut(s)	254, 486, 553
DpnI	GATC	3 cut(s)	162, 236, 278
DpnII	GATC	3 cut(s)	160, 234, 276
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	149, 268, 456
EarI	CTCTTC	3 cut(s)	149, 268, 456
EciI	GGCGGA	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	147
Esp3I	CGTCTC	1 cut(s)	78
FaiI	YATR	4 cut(s)	249, 300, 324, 479
Fnu4HI	GCNGC	4 cut(s)	87, 504, 550, 579
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	4 cut(s)	87, 504, 550, 579
GluI	GCNGC	4 cut(s)	87, 504, 550, 579
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	89, 560
HapII	CCGG	1 cut(s)	213
HgaI	GACGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	213
HphI	GGTGA	2 cut(s)	199, 555
Hpy188I	TCNGA	4 cut(s)	60, 268, 308, 556
Hpy188III	TCNNGA	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	4 cut(s)	94, 181, 313, 568
HpyCH4V	TGCA	4 cut(s)	35, 187, 326, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 500, 584
HpyF3I	CTNAG	3 cut(s)	254, 486, 553
Kzo9I	GATC	3 cut(s)	160, 234, 276
Lsp1109I	GCAGC	3 cut(s)	515, 561, 565
LweI	GCATC	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	162, 236, 278
MboI	GATC	3 cut(s)	160, 234, 276
MboII	GAAGA	5 cut(s)	136, 235, 255, 410, 443
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	3 cut(s)	287, 338, 432
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	491, 500, 584
NdeII	GATC	3 cut(s)	160, 234, 276
PceI	AGGCCT	1 cut(s)	560
PfeI	GAWTC	1 cut(s)	49
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	88, 505, 551, 580
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	4 cut(s)	87, 504, 550, 579
Sau3AI	GATC	3 cut(s)	160, 234, 276
ScrFI	CCNGG	1 cut(s)	149
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	3 cut(s)	287, 338, 432
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	2 cut(s)	27, 86
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	147
TaqI	TCGA	2 cut(s)	116, 237
TasI	AATT	3 cut(s)	287, 338, 432
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	476
TseI	GCWGC	3 cut(s)	503, 549, 578
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.