Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019326

Physical Location & Seq

Genomic Coordinates Reverse (-)

52951239 .. 52955875

Gene Structure 4637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG228200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGTTGGATTTGAGCTCAATGGCATCGGAATCGATTCTTTTACATTTTGACTTAGGTGCTATGCACTTTTTCCGCAAGTTCAGCATTGGTGACCTCAACATCGGAGATTATCTCGCACTTGGAGCAATATTTTCTGCAACCGATTCTGTTTGCACCTTGCAGGTGCTTAATCAAGATGAGACACCTTTGTTATACAGTCTGGTTTTTGGGGAAGGTGTAGTCAATGATGCTACATCAGTCGTGCTTTTCAATGCAATCCAGAGCTTTGACCTCTCCCACATCAATACAAGCACTGTTATGCAGTTTATTGGAAACTTTTTATATCTATTCGCTACGAGTACAATGCTGGGAGTTGTAGCTGGACTACTTAGTGCATATGTAATTAGAAAGCTCTATTTTGGCAGACACTCAACTGATCGTGAAGTTGCTCTTATGATCCTCATGGCTTACCTTTCGTACATGCTAGCTGAACTGTTTTATTTAAGTGCCATTCTCACTGTGTTCTTTTGTGGAATTGTTATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACAACTAAGCATGCTTTTGCCACTCTATCATTTGTTGCTGAGATTTTTATCTTTCTTTACGTTGGTATGGACGCCTTAGACATTGACAAGTGGAGATTTGTGAGCGATAGGTTATATTGGGTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

231

Amino Acids

25.95

Weight (kDa)

5.03

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	22 - 214	3e-33	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019326)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g21460
rosa_chinensis	RchiOBHm_Chr2g0132071
rosa_multiflora	Rmu_sc0008453.1_g000012 Rmu_sc0014425.1_g000010
rosa_rugosa	Rorug02G0638200 Rorug05G0316800
rosa_samantha	Rh3CG318500 Rh4AG228200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	2 cut(s)	343, 461
AgsI	TTSAA	2 cut(s)	253, 561
AluBI	AGCT	5 cut(s)	18, 267, 362, 394, 470
AluI	AGCT	5 cut(s)	18, 267, 362, 394, 470
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	176, 531
AlwI	GGATC	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	104
AsuNHI	GCTAGC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BcgI	CGANNNNNNTGC	4 cut(s)	15, 49, 328, 362
BcoDI	GTCTC	2 cut(s)	176, 531
BfaI	CTAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	35, 220
BmtI	GCTAGC	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	639
Bse8I	GATNNNNATC	1 cut(s)	614
BseCI	ATCGAT	1 cut(s)	35
BseJI	GATNNNNATC	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	597
BseYI	CCCAGC	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	176, 531
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	418, 438
BspACI	CCGC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	598
BspDI	ATCGAT	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	433
BssMI	GATC	2 cut(s)	418, 438
BssNI	GRCGYC	1 cut(s)	639
Bst4CI	ACNGT	4 cut(s)	200, 298, 477, 502
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	468, 579
BstDEI	CTNAG	6 cut(s)	55, 371, 573, 606, 643, 693
BstEII	GGTNACC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	421, 441
BstMAI	GTCTC	2 cut(s)	176, 531
BstMBI	GATC	2 cut(s)	418, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 125
BstNSI	RCATGY	2 cut(s)	466, 581
BstPI	GGTNACC	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	35
BtsIMutI	CAGTG	2 cut(s)	294, 498
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	468, 579
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	342, 460
CviAII	CATG	4 cut(s)	445, 463, 537, 578
CviJI	RGCY	6 cut(s)	18, 267, 362, 394, 449, 470
CviKI_1	RGCY	6 cut(s)	18, 267, 362, 394, 449, 470
CviQI	GTAC	2 cut(s)	342, 460
DdeI	CTNAG	6 cut(s)	55, 371, 573, 606, 643, 693
DpnI	GATC	2 cut(s)	420, 440
DpnII	GATC	2 cut(s)	418, 438
Ecl136II	GAGCTC	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco91I	GGTNACC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	4 cut(s)	448, 466, 540, 581
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FatI	CATG	4 cut(s)	444, 462, 536, 577
FauNDI	CATATG	1 cut(s)	379
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	467
GsaI	CCCAGC	1 cut(s)	353
HgaI	GACGC	1 cut(s)	647
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	4 cut(s)	448, 466, 540, 581
HinfI	GANTC	3 cut(s)	32, 37, 146
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	31, 107
Hpy188III	TCNNGA	4 cut(s)	176, 262, 422, 561
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	4 cut(s)	200, 298, 477, 502
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	7 cut(s)	67, 140, 156, 163, 257, 304, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 125
HpyF3I	CTNAG	6 cut(s)	55, 371, 573, 606, 643, 693
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	448, 466, 540, 581
Kzo9I	GATC	2 cut(s)	418, 438
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	149, 188, 275, 335, 348
LweI	GCATC	2 cut(s)	35, 220
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	92, 547, 565
MalI	GATC	2 cut(s)	420, 440
MboI	GATC	2 cut(s)	418, 438
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	384, 516
MnlI	CCTC	3 cut(s)	107, 284, 452
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	2 cut(s)	171, 485
MslI	CAYNNNNRTG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	84, 125
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	2 cut(s)	418, 438
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	448, 466, 540, 581
NmuCI	GTSAC	3 cut(s)	92, 547, 565
NspI	RCATGY	2 cut(s)	466, 581
PaeI	GCATGC	1 cut(s)	581
PaqCI	CACCTGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	32, 37, 146
Psp124BI	GAGCTC	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	343, 461
RsaNI	GTAC	2 cut(s)	342, 460
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	171, 485
Sau3AI	GATC	2 cut(s)	418, 438
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	35, 220
SmiMI	CAYNNNNRTG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	2 cut(s)	384, 516
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	20
TaaI	ACNGT	4 cut(s)	200, 298, 477, 502
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	384, 516
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	3 cut(s)	32, 37, 146
Tru1I	TTAA	2 cut(s)	171, 485
Tru9I	TTAA	2 cut(s)	171, 485
TscAI	CASTG	2 cut(s)	301, 505
TseFI	GTSAC	3 cut(s)	92, 547, 565
Tsp45I	GTSAC	3 cut(s)	92, 547, 565
TspRI	CASTG	2 cut(s)	301, 505
XceI	RCATGY	2 cut(s)	466, 581
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.