pycom12g21880
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
22984006 .. 22986347
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1926 bp
ATGTTTAATGGAGTCCCAGCTGAGCAGTTGCACCAATTCATAGCATCCTCAAGAACTTCCCTCCCTCTTCCTCTCCCTCTCCCTCTCCCTCTCTCCTCCTTCCCTCCTCCACCATCAAACAATAATATTAATACCTTCCCTGTCCCTGCTGCTACTCCCTTTGACCCCTACAACAATAACAACCCTTTTCATCTTCATCATCATCAACTTCTGCAAATTCAACCCCATCAGCTTCATCAGAATAATCAGCTTCTGCAACTGCACCGCCAATCTGCCGCCATCCCCAAAAATCTCGAGGAGAAAGAGGAACTCTCTAGTACTGTTTCAAACTCCATAAACAATAATTTGGAGACCGAAGGAGAGAGATCTTCATTGATACCGGCATCATCAGATGTATCAATCATTAGTGATTCTTGGAGTAATGATGAATTGCTTGCACTTCTCAGGATCGATCTACCATGGAGAATTGGTTCCCTGAGTTCGCTTGGGAACATGTCTCAAGTTATGGGGGGAAGCAGGAATCTAGCAGAGCTTGGTTTCAAAAGGAGTGCAGAGAAATGCAAAGAGAAGTTTGAAGAAGAAAGCAGATACTTCAACAACATTAACTTCACCAAAAACTACAGTTTTCTCAGTGACCTCGAACAACTCTGTCAAGGTGGTGGTGATGCTCATCAACAAAACGCTGATGATCATCACCGAAACCCTGCTGATCATCAGGAAGCTCCCGAGGATAAAAATAATGAGAAAGAAAAGGTTGAAAAGCCGAGTGATGAGGGAGATCATCAAGACTCAACGAGAAATGAAACAATTGTTGGGGACAGTATCGGTGTGATTAGCACCGAGCCGCTGAACCCTGAGGAGCACAATGAGAAAGAGGTAGTAGTGGAAACTAGACCAAAGAACAATACTAAGAAGAGGAAAAGGCAAAGGAAATTTGAAATGCTCAAGGGTTTCTGTGAGGACATTGTGAACAGGATGATGGCTCGGCAGGAAGCGATGCACAACAAGCTTCTTGAAGAAATGGTGAAGATAAACGAGGAGAAGCTTGCGAGGGAAGAAGCATGGAAGAAGCAAGAGACGGATAGGATGAACAAGGAGCTCGAGATTATGGCGAGAGAACAAGCGGTTGCTGGTGATCGACAAGCTACAGTCATTAAGTTCTTGAAGAAGTTCACATCGTCGTCCAGCAATTCTAGTACTTCCACTTCGTCTTTTCCGATTCAAGCACAAAACCCTAATCGTCCTACGTGTCACGATGTTAGTGGCCGAAAAGAACTTGATCATCATCAAGAAAAAGAAAATAACCCAACAACGCCTAGTTCATTAACTGAAAGTACTCTTGCACCGCAAAGCCCTAGCTCAAGTACTCTTGCTCCGACTCCGATTGCCGTTCCAACCATGACCATTTTATCTAGAGCTGCTGCTGCTGCTGCTGCTGTCGTCGCACCTCCTGAAAACCCTAGTTCTGATGATGTCATCATCAACACTCAAAACCCTAGTTCCATTAGTCATGACAAACAAGACCTCGGAAAGAGATGGCCGAGAGATGAAGTGCTGGCTCTGATAAACTTAAGGTGCAGCCTCTTCAACAATGGCGGCGGCGGCGATCAGGACAAGGACGGAGGAGTCGTGATGAAAGCTCCTCTTTGGGAGAGAATCTCACAAGGGATGTTGGAGATGGGTTACACAAGGAGTGCCAAGAGGTGCAAAGAGAAATGGGAGAACATTAACAAGTACTTTAGAAAAACAAAAGATGTTAACAAGAAGAGGTCACTTGACTCTAGGACTTGTCCTTATTTTCATCAACTAAGCTCTTTGTACAATCAAGGGATACTCGTACTGCCTTCTGATCATGCACCGGAAGACCGTCCCGCTTCGCCGGAAAACCATTCTCTAGGTGATGATGATTCAACTAAGCATGATTAA

Protein Analysis

642

Amino Acids

71.9

Weight (kDa)

5.89

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 511 - 605 2.3e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1625
AciI CCGC 9 cut(s) 265, 276, 845, 1124, 1346, 1596, 1599, 1602, 1872
AclWI GGATC 1 cut(s) 455
AcoI YGGCCR 2 cut(s) 1264, 1538
AcsI RAATTY 2 cut(s) 216, 932
AfaI GTAC 7 cut(s) 319, 1198, 1336, 1366, 1736, 1820, 1839
AflII CTTAAG 1 cut(s) 1570
AflIII ACRYGT 2 cut(s) 492, 1247
AjuI GAANNNNNNNTTGG 2 cut(s) 795, 827
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
Alw21I GWGCWC 2 cut(s) 864, 1101
Alw26I GTCTC 3 cut(s) 344, 501, 1070
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 253
Ama87I CYCGRG 3 cut(s) 293, 725, 1100
AoxI GGCC 2 cut(s) 1264, 1538
ApeKI GCWGC 8 cut(s) 149, 1418, 1421, 1424, 1427, 1430, 1433, 1578
ApoI RAATTY 2 cut(s) 216, 932
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 2 cut(s) 469, 1169
AsuHPI GGTGA 6 cut(s) 601, 674, 686, 1036, 1145, 1910
AvaI CYCGRG 3 cut(s) 293, 725, 1100
AxyI CCTNAGG 1 cut(s) 855
BanII GRGCYC 1 cut(s) 1101
BarI GAAGNNNNNNTAC 2 cut(s) 1189, 1221
BbsI GAAGAC 1 cut(s) 1869
Bbv12I GWGCWC 2 cut(s) 864, 1101
BbvI GCAGC 8 cut(s) 136, 1405, 1408, 1411, 1414, 1417, 1420, 1590
BccI CCATC 6 cut(s) 121, 234, 287, 973, 1530, 1672
BceAI ACGGC 1 cut(s) 1373
BciVI GTATCC 1 cut(s) 1824
BclI TGATCA 4 cut(s) 688, 709, 1279, 1849
BcoDI GTCTC 3 cut(s) 344, 501, 1070
BfmI CTRYAG 2 cut(s) 619, 1146
BfrI CTTAAG 1 cut(s) 1570
BfuI GTATCC 1 cut(s) 1824
BglII AGATCT 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 21
BmcAI AGTACT 5 cut(s) 319, 1198, 1336, 1366, 1736
BmeT110I CYCGRG 3 cut(s) 293, 725, 1100
BmiI GGNNCC 1 cut(s) 472
BmsI GCATC 4 cut(s) 53, 392, 655, 987
BpiI GAAGAC 1 cut(s) 1869
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 1643, 1675
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 4 cut(s) 34, 483, 929, 1345
Bsa29I ATCGAT 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 1248
BsaBI GATNNNNATC 3 cut(s) 669, 690, 1284
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 458, 726, 1525
BsaWI WCCGGW 1 cut(s) 1858
BsaXI ACNNNNNCTCC 6 cut(s) 454, 484, 1357, 1387, 1614, 1644
Bse118I RCCGGY 1 cut(s) 379
Bse21I CCTNAGG 1 cut(s) 855
Bse8I GATNNNNATC 3 cut(s) 669, 690, 1284
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 3 cut(s) 458, 726, 1525
BseGI GGATG 5 cut(s) 44, 279, 981, 1092, 1674
BseJI GATNNNNATC 3 cut(s) 669, 690, 1284
BseMII CTCAG 5 cut(s) 12, 457, 467, 643, 846
BseRI GAGGAG 7 cut(s) 85, 96, 311, 872, 1052, 1632, 1638
BseXI GCAGC 8 cut(s) 136, 1405, 1408, 1411, 1414, 1417, 1420, 1590
BseYI CCCAGC 1 cut(s) 16
BsgI GTGCAG 3 cut(s) 245, 570, 1597
BshFI GGCC 2 cut(s) 1266, 1540
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 864, 1101
BsiHKCI CYCGRG 3 cut(s) 293, 725, 1100
BsiSI CCGG 3 cut(s) 380, 1859, 1880
BslFI GGGAC 3 cut(s) 128, 830, 1854
BsmAI GTCTC 3 cut(s) 344, 501, 1070
BsmBI CGTCTC 1 cut(s) 1070
BsmFI GGGAC 3 cut(s) 128, 830, 1854
BsnI GGCC 2 cut(s) 1266, 1540
Bso31I GGTCTC 1 cut(s) 344
BsoBI CYCGRG 3 cut(s) 293, 725, 1100
Bsp1286I GDGCHC 2 cut(s) 864, 1101
Bsp1407I TGTACA 1 cut(s) 1818
Bsp1720I GCTNAGC 1 cut(s) 21
Bsp19I CCATGG 1 cut(s) 458
BspACI CCGC 9 cut(s) 265, 276, 845, 1124, 1346, 1596, 1599, 1602, 1872
BspANI GGCC 2 cut(s) 1266, 1540
BspCNI CTCAG 5 cut(s) 13, 456, 468, 642, 847
BspDI ATCGAT 1 cut(s) 450
BspHI TCATGA 1 cut(s) 1510
BspLI GGNNCC 1 cut(s) 472
BspPI GGATC 1 cut(s) 455
BspTI CTTAAG 1 cut(s) 1570
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 379
BsrGI TGTACA 1 cut(s) 1818
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 458, 726, 1525
BssT1I CCWWGG 1 cut(s) 458
Bst4CI ACNGT 5 cut(s) 322, 623, 821, 1150, 1868
Bst6I CTCTTC 4 cut(s) 72, 908, 1589, 1760
BstAFI CTTAAG 1 cut(s) 1570
BstAUI TGTACA 1 cut(s) 1818
BstBAI YACGTR 1 cut(s) 1248
BstC8I GCNNGC 3 cut(s) 435, 1047, 1557
BstDEI CTNAG 8 cut(s) 21, 443, 476, 629, 855, 909, 1808, 1914
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 5 cut(s) 44, 279, 981, 1092, 1674
BstMAI GTCTC 3 cut(s) 344, 501, 1070
BstMWI GCNNNNNNNGC 7 cut(s) 1006, 1424, 1427, 1430, 1433, 1442, 1602
BstNSI RCATGY 1 cut(s) 496
BstSFI CTRYAG 2 cut(s) 619, 1146
BstV1I GCAGC 8 cut(s) 136, 1405, 1408, 1411, 1414, 1417, 1420, 1590
BstV2I GAAGAC 1 cut(s) 1869
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 450
Bsu36I CCTNAGG 1 cut(s) 855
BsuI GTATCC 1 cut(s) 1824
BsuRI GGCC 2 cut(s) 1266, 1540
BsuTUI ATCGAT 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 1010
BtsCI GGATG 5 cut(s) 44, 279, 981, 1092, 1674
BtsIMutI CAGTG 1 cut(s) 637
Cac8I GCNNGC 3 cut(s) 435, 1047, 1557
CaiI CAGNNNCTG 1 cut(s) 253
CciI TCATGA 1 cut(s) 1510
Cfr10I RCCGGY 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 450
Csp6I GTAC 7 cut(s) 318, 1197, 1335, 1365, 1735, 1819, 1838
CviAII CATG 7 cut(s) 459, 493, 1062, 1399, 1511, 1853, 1919
CviQI GTAC 7 cut(s) 318, 1197, 1335, 1365, 1735, 1819, 1838
DdeI CTNAG 8 cut(s) 21, 443, 476, 629, 855, 909, 1808, 1914
DrdI GACNNNNNNGTC 1 cut(s) 1625
DseDI GACNNNNNNGTC 1 cut(s) 1625
EaeI YGGCCR 2 cut(s) 1264, 1538
Eam1104I CTCTTC 4 cut(s) 72, 908, 1589, 1760
EarI CTCTTC 4 cut(s) 72, 908, 1589, 1760
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 1101
Eco31I GGTCTC 1 cut(s) 344
Eco53kI GAGCTC 1 cut(s) 1099
Eco81I CCTNAGG 1 cut(s) 855
Eco88I CYCGRG 3 cut(s) 293, 725, 1100
EcoICRI GAGCTC 1 cut(s) 1099
EcoT14I CCWWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 458
Esp3I CGTCTC 1 cut(s) 1070
FaeI CATG 7 cut(s) 462, 496, 1065, 1402, 1514, 1856, 1922
FalI AAGNNNNNCTT 2 cut(s) 1629, 1661
FaqI GGGAC 3 cut(s) 128, 830, 1854
FatI CATG 7 cut(s) 458, 492, 1061, 1398, 1510, 1852, 1918
FauI CCCGC 1 cut(s) 1879
FbaI TGATCA 4 cut(s) 688, 709, 1279, 1849
FokI GGATG 5 cut(s) 31, 266, 988, 1099, 1681
FriOI GRGCYC 1 cut(s) 1101
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 2 cut(s) 1266, 1540
HapII CCGG 3 cut(s) 380, 1859, 1880
Hin1II CATG 7 cut(s) 462, 496, 1065, 1402, 1514, 1856, 1922
HincII GTYRAC 1 cut(s) 1759
HindII GTYRAC 1 cut(s) 1759
HindIII AAGCTT 2 cut(s) 1007, 1043
HpaI GTTAAC 1 cut(s) 1759
HpaII CCGG 3 cut(s) 380, 1859, 1880
HphI GGTGA 6 cut(s) 601, 674, 686, 1036, 1145, 1910
Hpy166II GTNNAC 3 cut(s) 970, 1173, 1759
Hpy188I TCNGA 9 cut(s) 240, 391, 1218, 1377, 1383, 1468, 1529, 1563, 1849
Hpy8I GTNNAC 3 cut(s) 970, 1173, 1759
Hpy99I CGWCG 2 cut(s) 1183, 1445
HpyAV CCTTC 4 cut(s) 109, 145, 350, 1854
HpyCH4III ACNGT 5 cut(s) 322, 623, 821, 1150, 1868
HpyCH4IV ACGT 1 cut(s) 1247
HpyF10VI GCNNNNNNNGC 7 cut(s) 1006, 1424, 1427, 1430, 1433, 1442, 1602
HpyF3I CTNAG 8 cut(s) 21, 443, 476, 629, 855, 909, 1808, 1914
HpySE526I ACGT 1 cut(s) 1247
Hsp92II CATG 7 cut(s) 462, 496, 1065, 1402, 1514, 1856, 1922
Ksp22I TGATCA 4 cut(s) 688, 709, 1279, 1849
KspAI GTTAAC 1 cut(s) 1759
LmnI GCTCC 5 cut(s) 727, 859, 1096, 1378, 1645
Lsp1109I GCAGC 8 cut(s) 136, 1405, 1408, 1411, 1414, 1417, 1420, 1590
LweI GCATC 4 cut(s) 53, 392, 655, 987
MaeII ACGT 1 cut(s) 1247
MaeIII GTNAC 4 cut(s) 632, 1250, 1682, 1770
MfeI CAATTG 1 cut(s) 807
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 864, 1101
MluCI AATT 8 cut(s) 35, 216, 343, 428, 465, 807, 932, 1189
MlyI GAGTC 5 cut(s) 21, 782, 1372, 1635, 1772
MmeI TCCRAC 3 cut(s) 1400, 1418, 1653
MroXI GAANNNNTTC 2 cut(s) 469, 1169
MseI TTAA 9 cut(s) 6, 129, 603, 1155, 1325, 1571, 1728, 1758, 1924
MspA1I CMGCKG 2 cut(s) 20, 847
MspCI CTTAAG 1 cut(s) 1570
MspI CCGG 3 cut(s) 380, 1859, 1880
MunI CAATTG 1 cut(s) 807
MwoI GCNNNNNNNGC 7 cut(s) 1006, 1424, 1427, 1430, 1433, 1442, 1602
NcoI CCATGG 1 cut(s) 458
NlaIII CATG 7 cut(s) 462, 496, 1065, 1402, 1514, 1856, 1922
NlaIV GGNNCC 1 cut(s) 472
NmeAIII GCCGAG 3 cut(s) 789, 964, 1566
NmuCI GTSAC 3 cut(s) 632, 1250, 1770
NspI RCATGY 1 cut(s) 496
PaeR7I CTCGAG 2 cut(s) 293, 1100
PagI TCATGA 1 cut(s) 1510
PciI ACATGT 1 cut(s) 492
PcsI WCGNNNNNNNCGW 2 cut(s) 1214, 1626
PdmI GAANNNNTTC 2 cut(s) 469, 1169
PfeI GAWTC 5 cut(s) 410, 520, 1219, 1656, 1907
PleI GAGTC 5 cut(s) 20, 782, 1372, 1634, 1772
PpsI GAGTC 5 cut(s) 20, 782, 1372, 1634, 1772
Ppu21I YACGTR 1 cut(s) 1248
PscI ACATGT 1 cut(s) 492
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 1101
PspFI CCCAGC 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 7 cut(s) 319, 1198, 1336, 1366, 1736, 1820, 1839
RsaNI GTAC 7 cut(s) 318, 1197, 1335, 1365, 1735, 1819, 1838
SacI GAGCTC 1 cut(s) 1101
SaqAI TTAA 9 cut(s) 6, 129, 603, 1155, 1325, 1571, 1728, 1758, 1924
ScaI AGTACT 5 cut(s) 319, 1198, 1336, 1366, 1736
SchI GAGTC 5 cut(s) 21, 782, 1372, 1635, 1772
SduI GDGCHC 2 cut(s) 864, 1101
SfaNI GCATC 4 cut(s) 53, 392, 655, 987
SfcI CTRYAG 2 cut(s) 619, 1146
Sfr274I CTCGAG 2 cut(s) 293, 1100
SlaI CTCGAG 2 cut(s) 293, 1100
SmlI CTYRAG 7 cut(s) 49, 293, 498, 944, 1100, 1360, 1570
SmoI CTYRAG 7 cut(s) 49, 293, 498, 944, 1100, 1360, 1570
Sse9I AATT 8 cut(s) 35, 216, 343, 428, 465, 807, 932, 1189
SsiI CCGC 9 cut(s) 265, 276, 845, 1124, 1346, 1596, 1599, 1602, 1872
SspI AATATT 1 cut(s) 127
SstI GAGCTC 1 cut(s) 1101
StyI CCWWGG 1 cut(s) 458
TaaI ACNGT 5 cut(s) 322, 623, 821, 1150, 1868
TaiI ACGT 1 cut(s) 1250
TaqI TCGA 5 cut(s) 294, 450, 639, 1101, 1138
TaqII GACCGA 1 cut(s) 368
TasI AATT 8 cut(s) 35, 216, 343, 428, 465, 807, 932, 1189
TatI WGTACW 6 cut(s) 317, 1196, 1334, 1364, 1734, 1818
TauI GCSGC 5 cut(s) 278, 847, 1599, 1602, 1605
TfiI GAWTC 5 cut(s) 410, 520, 1219, 1656, 1907
Tru1I TTAA 9 cut(s) 6, 129, 603, 1155, 1325, 1571, 1728, 1758, 1924
Tru9I TTAA 9 cut(s) 6, 129, 603, 1155, 1325, 1571, 1728, 1758, 1924
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 3 cut(s) 632, 1250, 1770
TseI GCWGC 8 cut(s) 149, 1418, 1421, 1424, 1427, 1430, 1433, 1578
Tsp45I GTSAC 3 cut(s) 632, 1250, 1770
TspGWI ACGGA 2 cut(s) 1094, 1635
TspRI CASTG 1 cut(s) 637
Vha464I CTTAAG 1 cut(s) 1570
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 2 cut(s) 216, 932
XbaI TCTAGA 1 cut(s) 1412
XceI RCATGY 1 cut(s) 496
XhoI CTCGAG 2 cut(s) 293, 1100
XmnI GAANNNNTTC 2 cut(s) 469, 1169
ZrmI AGTACT 5 cut(s) 319, 1198, 1336, 1366, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.