Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0018738

Physical Location & Seq

Genomic Coordinates Reverse (-)

23981318 .. 23981857

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGGCAAGTAATAAGAACCAAAAGTGTGGAATTCATGCCATTTTCTTTGTCCTTTTTCCTGACACTTTGTGCCACCATGTGGTTCTTCTACGGATTATTTACAAAGGATTACTACATTGCATTACCAAACGTATTAGGGTTTCTATTTGGCATTGCCCAAATGATCCTATACATGACATACAAGAATTCAGGAAACAATGTCGAAGAGAAAAGGAGTACTCAGGAGATGAAGAAGTTGAGCTCGACCAATCGTCCAAAGTTGGTGCGCAGCGTGAGCGAATATCCAAGATCAGATAAACTAAATCAGATTACGTATATCTACGAAGCAAACGATGAACACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0012505 GO:0012506 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031982 GO:0031984 GO:0032588 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046903 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071836 GO:0071944 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

116

Amino Acids

13.58

Weight (kDa)

9.24

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	1 - 64	1.2e-20	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39060
fragaria_vesca	FvH4_6g01150
malus_domestica	MD04G1236000.v1.1 MD12G1255000.v1.1
prunus_persica	Prupe.2G245600_v2.0.a1 Prupe.6G355900_v2.0.a1 Prupe.6G355900_v2.0.a1
pyrus_communis	pycom04g20970 pycom12g23360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	81
AclWI	GGATC	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	32, 187
AdeI	CACNNNGTG	2 cut(s)	71, 81
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	252
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw21I	GWGCWC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	2 cut(s)	32, 187
AspLEI	GCGC	1 cut(s)	270
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	220
BmeRI	GACNNNNNGTC	1 cut(s)	252
BsaAI	YACGTR	2 cut(s)	315, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse3DI	GCAATG	2 cut(s)	117, 153
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	2 cut(s)	117, 153
BseMII	CTCAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	165, 290
BspCNI	CTCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	117, 153
BssMI	GATC	2 cut(s)	165, 290
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	2 cut(s)	315, 343
BstDEI	CTNAG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	2 cut(s)	168, 293
BstMBI	GATC	2 cut(s)	165, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	276
BstSNI	TACGTA	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	37, 79, 175
CviJI	RGCY	1 cut(s)	243
CviKI_1	RGCY	1 cut(s)	243
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	167, 292
DpnII	GATC	2 cut(s)	165, 290
DraIII	CACNNNGTG	2 cut(s)	71, 81
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	243
EcoRI	GAATTC	2 cut(s)	32, 187
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	3 cut(s)	40, 82, 178
FaiI	YATR	7 cut(s)	38, 80, 172, 176, 181, 318, 346
FatI	CATG	3 cut(s)	36, 78, 174
Fnu4HI	GCNGC	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	271
FspI	TGCGCA	1 cut(s)	269
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	3 cut(s)	40, 82, 178
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	295, 309
Hpy188III	TCNNGA	3 cut(s)	61, 192, 224
HpyCH4IV	ACGT	3 cut(s)	132, 314, 342
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	3 cut(s)	132, 314, 342
Hsp92II	CATG	3 cut(s)	40, 82, 178
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	165, 290
LpnPI	CCDG	3 cut(s)	74, 177, 209
Lsp1109I	GCAGC	1 cut(s)	282
MaeII	ACGT	3 cut(s)	132, 314, 342
MalI	GATC	2 cut(s)	167, 292
MboI	GATC	2 cut(s)	165, 290
MboII	GAAGA	3 cut(s)	79, 218, 244
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	2 cut(s)	32, 187
MwoI	GCNNNNNNNGC	1 cut(s)	276
NdeII	GATC	2 cut(s)	165, 290
NlaIII	CATG	3 cut(s)	40, 82, 178
NsbI	TGCGCA	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 339
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	272
Ppu21I	YACGTR	2 cut(s)	315, 343
Psp124BI	GAGCTC	1 cut(s)	245
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	165, 290
ScaI	AGTACT	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	4 cut(s)	135, 245, 317, 345
SnaBI	TACGTA	1 cut(s)	315
Sse9I	AATT	2 cut(s)	32, 187
SstI	GAGCTC	1 cut(s)	245
TaiI	ACGT	3 cut(s)	135, 317, 345
TaqI	TCGA	2 cut(s)	204, 245
TasI	AATT	2 cut(s)	32, 187
TatI	WGTACW	1 cut(s)	218
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	25, 245
TspGWI	ACGGA	1 cut(s)	108
Van91I	CCANNNNNTGG	1 cut(s)	81
XapI	RAATTY	2 cut(s)	32, 187
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.