pycom12g23730

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011891
Physical Location & Seq
Reverse (-)
24236023 .. 24237533
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGTGGTGTGTTGGGGCCTTGGGCTCAAAAACTATGACACCATCTGCCCCTTTCCCTCTCGCTGGAGCTGCGAGCAGAGCCCCCACCAATTCCCTCGCTTCATTCCACCTCCACCGTGCCTCTCGGCGTCCCCGCCCTCCTTCCGCCGTCTCTCTTTCAAATCACTCGTCCTTCGGACCCAAGCTATCTTCGAAGAAGATCCTCACTATCCGATGCTCCGCCGCATTAACTCCGGAGCTGAAGAATACGTTGGACAAAGTTGTTACTTCACACAAAGTTGTTCTGTTTATGAAGGGAACAAAGGATTTTCCACAATGTGGTTTTTCTAACACTTGCGTACAGATATTGAGGTCTTTGAATGTACCCTTCGAAACAATAAACATACTAGAAAATGAACTTTTGCGCCAGGGATTAAAGGAGTATTCGAGTTGGCCAACATTTCCTCAACTCTACATTGAAGGAGAGTTTTTCGGAGGCTGTGACATCACTGTTGATGCATATAAAAGCGGGGAGTTGCAGGAACTATTGGAGAAGGCAATGTGCTCGTAA

Protein Analysis

183

Amino Acids

19.94

Weight (kDa)

9.1

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 93 - 156 5.9e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54900
fragaria_vesca FvH4_6g00720 FvH4_6g00720
malus_domestica MD04G1241900.v1.1 MD12G1258800.v1.1
prunus_persica Prupe.6G359300_v2.0.a1 Prupe.6G359300_v2.0.a1
pyrus_communis pycom04g21340 pycom12g23730
rosa_chinensis RchiOBHm_Chr3g0448191
rosa_laevigata RLG00000025939
rosa_multiflora Rmu_sc0013667.1_g000004
rosa_roxburghii Rroxscaffold_6G00426330
rosa_rugosa Rorug02G0608500
rosa_samantha Rh3AG008700 Rh3BG008200 Rh3CG008300 Rh3DG008900
rosa_wichuraiana Rw3G000690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 317
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 5 cut(s) 133, 144, 219, 222, 507
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 127
AdeI CACNNNGTG 1 cut(s) 317
AfaI GTAC 2 cut(s) 339, 363
AfiI CCNNNNNNNGG 2 cut(s) 62, 317
AgsI TTSAA 3 cut(s) 159, 358, 458
AjnI CCWGG 1 cut(s) 405
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 68, 184, 238
AluI AGCT 3 cut(s) 68, 184, 238
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 2 cut(s) 15, 431
ApeKI GCWGC 1 cut(s) 68
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 15, 176
AsuII TTCGAA 2 cut(s) 191, 369
AvaII GGWCC 1 cut(s) 176
BalI TGGCCA 1 cut(s) 433
BanII GRGCYC 2 cut(s) 26, 82
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 131
BcgI CGANNNNNNTGC 1 cut(s) 525
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 386
BisI GCNGC 2 cut(s) 69, 222
BlsI GCNGC 2 cut(s) 70, 223
Bme1390I CCNGG 1 cut(s) 407
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 15, 176
BmiI GGNNCC 2 cut(s) 16, 178
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 2 cut(s) 203, 484
BpmI CTGGAG 1 cut(s) 84
Bpu14I TTCGAA 2 cut(s) 191, 369
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 18, 406
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 317
Bse3DI GCAATG 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 18, 406
BseLI CCNNNNNNNGG 2 cut(s) 62, 317
BseMI GCAATG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 55
BshFI GGCC 2 cut(s) 17, 433
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 62, 317
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 17, 433
Bsp119I TTCGAA 2 cut(s) 191, 369
Bsp1286I GDGCHC 3 cut(s) 26, 82, 545
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 5 cut(s) 133, 144, 219, 222, 507
BspANI GGCC 2 cut(s) 17, 433
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 2 cut(s) 16, 178
BspPI GGATC 1 cut(s) 193
BspT104I TTCGAA 2 cut(s) 191, 369
BsrDI GCAATG 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 18, 406
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 116, 490
BstACI GRCGYC 1 cut(s) 127
BstBI TTCGAA 2 cut(s) 191, 369
BstC8I GCNNGC 1 cut(s) 73
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 68, 77
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 2 cut(s) 17, 433
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 15, 176
CseI GACGC 1 cut(s) 116
Csp6I GTAC 2 cut(s) 338, 362
CviJI RGCY 8 cut(s) 17, 24, 68, 80, 184, 238, 433, 477
CviKI_1 RGCY 8 cut(s) 17, 24, 68, 80, 184, 238, 433, 477
CviQI GTAC 2 cut(s) 338, 362
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
DraIII CACNNNGTG 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 431
EciI GGCGGA 2 cut(s) 133, 208
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 26, 82
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 26, 82
ErhI CCWWGG 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 5 cut(s) 35, 290, 383, 499, 501
FaqI GGGAC 1 cut(s) 114
FauI CCCGC 2 cut(s) 140, 500
Fnu4HI GCNGC 2 cut(s) 69, 222
FriOI GRGCYC 2 cut(s) 26, 82
Fsp4HI GCNGC 2 cut(s) 69, 222
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 404
GluI GCNGC 2 cut(s) 69, 222
GsuI CTGGAG 1 cut(s) 84
HaeIII GGCC 2 cut(s) 17, 433
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 176, 212, 473
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 6 cut(s) 150, 181, 286, 376, 452, 526
HpyCH4III ACNGT 2 cut(s) 116, 490
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 497, 517
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 77
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 127
HspAI GCGC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 65, 221, 235
LpnPI CCDG 5 cut(s) 48, 246, 392, 419, 503
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 203, 484
MaeI CTAG 1 cut(s) 386
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 2 cut(s) 262, 479
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 4 cut(s) 180, 205, 208, 253
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 3 cut(s) 26, 82, 545
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 1 cut(s) 88
MluNI TGGCCA 1 cut(s) 433
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 9 cut(s) 66, 104, 119, 130, 147, 212, 342, 453, 467
Mox20I TGGCCA 1 cut(s) 433
Mph1103I ATGCAT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 232
MscI TGGCCA 1 cut(s) 433
MseI TTAA 2 cut(s) 227, 413
Msp20I TGGCCA 1 cut(s) 433
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 68, 77
NdeII GATC 1 cut(s) 198
NlaIV GGNNCC 2 cut(s) 16, 178
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 499
NspV TTCGAA 2 cut(s) 191, 369
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 2 cut(s) 70, 223
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 16, 178
PspPI GGNCC 2 cut(s) 15, 176
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 2 cut(s) 339, 363
RsaNI GTAC 2 cut(s) 338, 362
SaqAI TTAA 2 cut(s) 227, 413
SatI GCNGC 2 cut(s) 69, 222
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 2 cut(s) 15, 176
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 3 cut(s) 26, 82, 545
SetI ASST 6 cut(s) 70, 111, 186, 240, 251, 353
SfaNI GCATC 2 cut(s) 203, 484
SfuI TTCGAA 2 cut(s) 191, 369
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 88
SsiI CCGC 5 cut(s) 133, 144, 219, 222, 507
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 405
StyI CCWWGG 1 cut(s) 18
TaaI ACNGT 2 cut(s) 116, 490
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 191, 369, 425
TasI AATT 1 cut(s) 88
TauI GCSGC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 227, 413
Tru9I TTAA 2 cut(s) 227, 413
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 68
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 90, 305, 408
TspRI CASTG 1 cut(s) 493
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 176
XspI CTAG 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.