Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015614

Physical Location & Seq

Genomic Coordinates Reverse (-)

509301 .. 512023

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGGGAAAGTTTGGAACACCAGGAAATTACCTTGTGTTAAACACAGGGGATAGAATTCCTGCCATTGGACTTGGGACATGGCAGAGTGGCGGAGACCTTTGTGTTCAAGCCGTAAAAACGGCGTTATCGGTGGGTTACCGCCATATAGATTGTGCACATCTTTATGGTAATGAGATCGAAGTTGGGGAAGCATTAGCTGAAGCATTTAGGGGTTCACTGAAGAGGGAAGACGTTTTCTTGACTTCTAATCTCTACTGCACAATGAATCCTCTCAATAAAATTGAGAATTATGTTCGAGATTCTCTTAAGAATCTTGGAGTTTCGTATTTGGATCTATATTTGATGCATTGGCCTGATAGCTCAGCGTTTGGTGATGCTACTGATCCGCCTTCAAAGTCTGGGAGCGAGTATAGGCAATTCTTGAATCGGTCGAAGAAAGCATGGAAAGCTATGGAAGGTCTGGTTGAGATGGGTCTGGTGAGGGCTATTGGGGTCAGCAATTTCAGTGTTTCGCAAATCAAACAATTGCTTAAATTTGCAAAGATTGTACCCGCTGTCAATCAGGTGGAGTTGCACCCCTTTTGGAGGCAAGATGAACTTGTAAAGTTCTGTCAATTGAAAGGTATTCATGTGTCTGCTCACACACCCTTAGGAGTCCCAACTTCTACTCCTGGACCATCTGATAGCAGTTCAGGTGGGGAAGATGAACCTGGAACTCCTCGCATATCATTCAGGAGGTCAAGGTCTGTGCATGGTCCTATGCTGAAAATATCAACAGTTGCAGAGATAGCAGACCGACACAGAAAAACACCTGAGCAGGTTATTTTGCGTTGGGGGCTGCAAAGAGGAACCAGTGTGCTGCCTTGTAGTCTGAAGCCTGATAGGATTAGAAAAAACATAGACATCTTCAGTTGGTCTCTATCAGATGATGAGTGGAACCGCTTGAACCAAAGATCGATCGAGCCCCAGGTATGCTTGTTTGGAAATGGTCCTTTGAATAATCTTTCGAAGAGTGGGTTTATGTCTGGAAGTGGTCCACTTCAAGCTGTGCATGAGATGGAAGATGACATGGAATCCAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0050113 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

363

Amino Acids

40.05

Weight (kDa)

8.15

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015614)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36371
malus_domestica	MD13G1009500.v1.1 MD16G1007700.v1.1
prunus_persica	Prupe.1G343100_v2.0.a1
pyrus_communis	pycom13g00810 pycom16g00760
rosa_chinensis	RchiOBHm_Chr4g0446121
rosa_laevigata	RLG00000005690
rosa_multiflora	Rmu_sc0012061.1_g000005
rosa_roxburghii	Rroxscaffold_5G00386520
rosa_rugosa	Rorug04G0368000
rosa_samantha	Rh4AG429600 Rh4BG439100 Rh4CG456400 Rh4DG437500
rosa_wichuraiana	Rw4G036710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	811
AciI	CCGC	5 cut(s)	93, 142, 389, 555, 943
AclWI	GGATC	2 cut(s)	342, 380
AcsI	RAATTY	2 cut(s)	57, 536
AcuI	CTGAAG	4 cut(s)	222, 242, 895, 896
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	68, 588
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	7 cut(s)	110, 396, 427, 622, 949, 1000, 1046
AjnI	CCWGG	4 cut(s)	22, 673, 712, 969
AluBI	AGCT	4 cut(s)	200, 363, 452, 1049
AluI	AGCT	4 cut(s)	200, 363, 452, 1049
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	90, 924
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	342, 380
AoxI	GGCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	841, 862
ApoI	RAATTY	2 cut(s)	57, 536
AspS9I	GGNCC	4 cut(s)	677, 758, 992, 1037
AsuHPI	GGTGA	2 cut(s)	386, 493
AsuII	TTCGAA	1 cut(s)	1010
AvaII	GGWCC	4 cut(s)	677, 758, 992, 1037
AxyI	CCTNAGG	1 cut(s)	652
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	828, 849
BccI	CCATC	3 cut(s)	466, 688, 1054
BceAI	ACGGC	2 cut(s)	98, 138
BciT130I	CCWGG	4 cut(s)	24, 675, 714, 971
BcoDI	GTCTC	2 cut(s)	90, 924
BfrI	CTTAAG	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	811
BisI	GCNGC	2 cut(s)	842, 863
BlpI	GCTNAGC	1 cut(s)	364
BlsI	GCNGC	2 cut(s)	843, 864
Bme1390I	CCNGG	4 cut(s)	24, 675, 714, 971
Bme18I	GGWCC	4 cut(s)	677, 758, 992, 1037
BmgT120I	GGNCC	4 cut(s)	677, 758, 992, 1037
BmiI	GGNNCC	2 cut(s)	853, 941
BmrFI	CCNGG	4 cut(s)	24, 675, 714, 971
BmsI	GCATC	2 cut(s)	336, 367
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	364
Bpu14I	TTCGAA	1 cut(s)	1010
Bsa29I	ATCGAT	1 cut(s)	959
BsaI	GGTCTC	2 cut(s)	90, 924
BsaJI	CCNNGG	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 588
Bse1I	ACTGG	1 cut(s)	855
Bse21I	CCTNAGG	1 cut(s)	652
BseBI	CCWGG	4 cut(s)	24, 675, 714, 971
BseCI	ATCGAT	1 cut(s)	959
BseDI	CCNNGG	1 cut(s)	969
BseLI	CCNNNNNNNGG	2 cut(s)	68, 588
BseMII	CTCAG	2 cut(s)	378, 807
BseNI	ACTGG	1 cut(s)	855
BseRI	GAGGAG	1 cut(s)	711
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	828, 849
BsgI	GTGCAG	1 cut(s)	244
Bsh1285I	CGRYCG	2 cut(s)	434, 963
BshFI	GGCC	1 cut(s)	355
BshVI	ATCGAT	1 cut(s)	959
BsiEI	CGRYCG	2 cut(s)	434, 963
BsiHKAI	GWGCWC	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	91, 644
BslI	CCNNNNNNNGG	2 cut(s)	68, 588
BsmAI	GTCTC	2 cut(s)	90, 924
BsmFI	GGGAC	2 cut(s)	91, 644
BsnI	GGCC	1 cut(s)	355
Bso31I	GGTCTC	2 cut(s)	90, 924
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1286I	GDGCHC	2 cut(s)	160, 969
Bsp143I	GATC	5 cut(s)	177, 334, 385, 956, 960
Bsp1720I	GCTNAGC	1 cut(s)	364
BspACI	CCGC	5 cut(s)	93, 142, 389, 555, 943
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	2 cut(s)	377, 808
BspDI	ATCGAT	1 cut(s)	959
BspLI	GGNNCC	2 cut(s)	853, 941
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	2 cut(s)	342, 380
BspT104I	TTCGAA	1 cut(s)	1010
BspTI	CTTAAG	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	90, 924
BsrI	ACTGG	1 cut(s)	855
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	5 cut(s)	177, 334, 385, 956, 960
Bst2UI	CCWGG	4 cut(s)	24, 675, 714, 971
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	2 cut(s)	218, 1007
BstAFI	CTTAAG	1 cut(s)	308
BstBI	TTCGAA	1 cut(s)	1010
BstDEI	CTNAG	3 cut(s)	364, 652, 816
BstEII	GGTNACC	1 cut(s)	137
BstENI	CCTNNNNNAGG	1 cut(s)	586
BstKTI	GATC	5 cut(s)	180, 337, 388, 959, 963
BstMAI	GTCTC	2 cut(s)	90, 924
BstMBI	GATC	5 cut(s)	177, 334, 385, 956, 960
BstMCI	CGRYCG	2 cut(s)	434, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 791, 838
BstNI	CCWGG	4 cut(s)	24, 675, 714, 971
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	22, 673, 712, 969
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	828, 849
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	959
Bsu36I	CCTNAGG	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	355
BsuTUI	ATCGAT	1 cut(s)	959
BtsIMutI	CAGTG	3 cut(s)	218, 514, 862
BveI	ACCTGC	1 cut(s)	811
Cfr13I	GGNCC	4 cut(s)	677, 758, 992, 1037
ClaI	ATCGAT	1 cut(s)	959
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	6 cut(s)	81, 444, 632, 755, 1055, 1072
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	3 cut(s)	364, 652, 816
DpnI	GATC	5 cut(s)	179, 336, 387, 958, 962
DpnII	GATC	5 cut(s)	177, 334, 385, 956, 960
Eam1104I	CTCTTC	2 cut(s)	218, 1007
EarI	CTCTTC	2 cut(s)	218, 1007
EciI	GGCGGA	2 cut(s)	108, 378
Eco24I	GRGCYC	1 cut(s)	969
Eco31I	GGTCTC	2 cut(s)	90, 924
Eco47I	GGWCC	4 cut(s)	677, 758, 992, 1037
Eco57I	CTGAAG	4 cut(s)	222, 242, 895, 896
Eco81I	CCTNAGG	1 cut(s)	652
Eco91I	GGTNACC	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	57
EcoRII	CCWGG	4 cut(s)	22, 673, 712, 969
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	969
FaeI	CATG	6 cut(s)	84, 447, 635, 758, 1058, 1075
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	2 cut(s)	91, 644
FatI	CATG	6 cut(s)	80, 443, 631, 754, 1054, 1071
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	842, 863
FriOI	GRGCYC	1 cut(s)	969
Fsp4HI	GCNGC	2 cut(s)	842, 863
GluI	GCNGC	2 cut(s)	842, 863
HaeIII	GGCC	1 cut(s)	355
Hin1II	CATG	6 cut(s)	84, 447, 635, 758, 1058, 1075
HinfI	GANTC	6 cut(s)	268, 302, 313, 427, 657, 1076
HphI	GGTGA	2 cut(s)	386, 493
Hpy166II	GTNNAC	3 cut(s)	158, 218, 1040
Hpy188I	TCNGA	3 cut(s)	685, 876, 928
Hpy188III	TCNNGA	5 cut(s)	241, 299, 424, 736, 1029
Hpy8I	GTNNAC	3 cut(s)	158, 218, 1040
HpyAV	CCTTC	2 cut(s)	402, 452
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	9 cut(s)	158, 261, 349, 542, 577, 754, 785, 844, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 791, 838
HpyF3I	CTNAG	3 cut(s)	364, 652, 816
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	84, 447, 635, 758, 1058, 1075
Kzo9I	GATC	5 cut(s)	177, 334, 385, 956, 960
LmnI	GCTCC	1 cut(s)	405
Lsp1109I	GCAGC	2 cut(s)	828, 849
LweI	GCATC	2 cut(s)	336, 367
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	5 cut(s)	179, 336, 387, 958, 962
MboI	GATC	5 cut(s)	177, 334, 385, 956, 960
MboII	GAAGA	7 cut(s)	235, 242, 448, 716, 901, 1024, 1076
MfeI	CAATTG	2 cut(s)	527, 617
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	160, 969
MluCI	AATT	9 cut(s)	28, 57, 282, 289, 419, 502, 527, 536, 617
MlyI	GAGTC	1 cut(s)	666
MnlI	CCTC	7 cut(s)	219, 282, 477, 582, 732, 732, 842
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	3 cut(s)	41, 309, 534
MslI	CAYNNNNRTG	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	557
MspCI	CTTAAG	1 cut(s)	308
MspR9I	CCNGG	4 cut(s)	24, 675, 714, 971
MunI	CAATTG	2 cut(s)	527, 617
MvaI	CCWGG	4 cut(s)	24, 675, 714, 971
MwoI	GCNNNNNNNGC	3 cut(s)	449, 791, 838
NdeII	GATC	5 cut(s)	177, 334, 385, 956, 960
NlaIII	CATG	6 cut(s)	84, 447, 635, 758, 1058, 1075
NlaIV	GGNNCC	2 cut(s)	853, 941
NsiI	ATGCAT	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	1010
PfeI	GAWTC	5 cut(s)	268, 302, 313, 427, 1076
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	843, 864
Ple19I	CGATCG	1 cut(s)	963
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp6I	CCWGG	4 cut(s)	22, 673, 712, 969
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	4 cut(s)	22, 673, 712, 969
PspN4I	GGNNCC	2 cut(s)	853, 941
PspPI	GGNCC	4 cut(s)	677, 758, 992, 1037
PsuI	RGATCY	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	963
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	41, 309, 534
SatI	GCNGC	2 cut(s)	842, 863
Sau3AI	GATC	5 cut(s)	177, 334, 385, 956, 960
Sau96I	GGNCC	4 cut(s)	677, 758, 992, 1037
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	4 cut(s)	24, 675, 714, 971
SduI	GDGCHC	2 cut(s)	160, 969
SfaNI	GCATC	2 cut(s)	336, 367
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	4 cut(s)	677, 758, 992, 1037
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	9 cut(s)	28, 57, 282, 289, 419, 502, 527, 536, 617
SsiI	CCGC	5 cut(s)	93, 142, 389, 555, 943
StyD4I	CCNGG	4 cut(s)	22, 673, 712, 969
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	6 cut(s)	180, 298, 434, 959, 963, 1010
TaqII	GACCGA	2 cut(s)	420, 813
TasI	AATT	9 cut(s)	28, 57, 282, 289, 419, 502, 527, 536, 617
TfiI	GAWTC	5 cut(s)	268, 302, 313, 427, 1076
Tru1I	TTAA	3 cut(s)	41, 309, 534
Tru9I	TTAA	3 cut(s)	41, 309, 534
TscAI	CASTG	3 cut(s)	225, 514, 862
TseI	GCWGC	2 cut(s)	841, 862
TspDTI	ATGAA	5 cut(s)	17, 281, 612, 620, 723
TspRI	CASTG	3 cut(s)	225, 514, 862
Vha464I	CTTAAG	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	156
VpaK11BI	GGWCC	4 cut(s)	677, 758, 992, 1037
XagI	CCTNNNNNAGG	1 cut(s)	586
XapI	RAATTY	2 cut(s)	57, 536
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.