Rh4DG437500

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015614
Physical Location & Seq
Forward (+)
64050088 .. 64054152
4065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG437500.1

Sequence Viewer

Length: 1089 bp
ATGAAAGGAAAGGTAGGATTACCAGGGAATTACTTTGTGTTGAACACAGGAGATAAAATTCCAGCCATTGGACTTGGGACATGGCAGAGTGGTGGAGACCTTTGTGTTCAAGCTGTGAAAACAGCATTATCAGTAGGTTACCGACACATAGATTGTGCACATCTTTATGGTAATGAGGTTGAAGTTGGTGAGGCATTAGCTGAAGCATTCAAGGGTTCACTGAAGAGGGAAGATGTTTTCTTGACTTCTAAGCTCTACTGCACAATGAATTCTCTCAATAAAATTGAGAATTATGTTAGAGTTTCTCTGAAGAACCTCGGCGTTTCGTATTTGGATCTGTATTTGATGCATTGGCCTGACAGCTCTGCGTTTGGTGACGCTACTGATCCTCCTTCGAAATCCGGGAGTGAGTATAGGCAGTTCTTGAATCGGCTGAAGAAAGCATGGAAAGCTATGGAAGGACTGGTTGAGTTGGGTCTGGTTAGAGCTATTGGGGTCAGCAATTTCAGCGTTGAGCAGATCAAACAATTGCTTAAATTTGCAAAAATTGTACCTGCAGTCAATCAGGTGGAGTTGCACCCTTTTTGGAGGCAAGATGAACTTGTAAAGTTATGTCAATTGAAAGGTATTCATGTATCAGCTCACACACCCTTAGGAGTCCCAGCTTCAAATCCTGGACCATCTGATAGCAGTTCAGGTGGGGAAGATGAGCCCGGAACTCCTCGCATATCATTCAGAAGGTCAAGGTCTGTGCATGGGCCTATGCTGAAATTGTCAACTGTTGAACAAATAGCAGATAGACACAGAAAAACACCTGAGCAGGTAATTTTGCGTTGGGGGCTGCAAAGAGGAACCAGCGTCCTACCATGTAGCTTGAAGCCAGATAGGATAAGAAAAAACATAGACATCTTCAGTTGGTCTCTGACAGACGATGAGTGGAATCGGTTGAATCACATTGAACCACAGGTATGCTTATTTGGAAACAGCCCTTTGAATACTCTTTCAGAGAGTGGCTTTGTGTCTGAAAGTGGATGCGGTCCTCTTCAAGCTGTGCATGAGATGGAAGATGACATGGAATCCAATGCCTGA

Protein Analysis

362

Amino Acids

40.02

Weight (kDa)

6.8

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 22 - 319 8.2e-55 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015614)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g36371
malus_domestica MD13G1009500.v1.1 MD16G1007700.v1.1
prunus_persica Prupe.1G343100_v2.0.a1
pyrus_communis pycom13g00810 pycom16g00760
rosa_chinensis RchiOBHm_Chr4g0446121
rosa_laevigata RLG00000005690
rosa_multiflora Rmu_sc0012061.1_g000005
rosa_roxburghii Rroxscaffold_5G00386520
rosa_rugosa Rorug04G0368000
rosa_samantha Rh4AG429600 Rh4BG439100 Rh4CG456400 Rh4DG437500
rosa_wichuraiana Rw4G036710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 562, 811
AccB7I CCANNNNNTGG 1 cut(s) 68
AciI CCGC 1 cut(s) 1035
AclWI GGATC 2 cut(s) 342, 380
AcsI RAATTY 3 cut(s) 57, 268, 536
AcuI CTGAAG 5 cut(s) 222, 242, 329, 455, 895
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 68
AjnI CCWGG 2 cut(s) 22, 673
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 90, 924
Alw44I GTGCAC 1 cut(s) 156
AlwI GGATC 2 cut(s) 342, 380
AoxI GGCC 2 cut(s) 353, 758
ApaLI GTGCAC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 841
ApoI RAATTY 3 cut(s) 57, 268, 536
AspS9I GGNCC 3 cut(s) 677, 758, 1037
AsuC2I CCSGG 2 cut(s) 403, 714
AsuHPI GGTGA 2 cut(s) 200, 386
AsuII TTCGAA 1 cut(s) 395
AvaII GGWCC 2 cut(s) 677, 1037
AxyI CCTNAGG 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 828
BccI CCATC 2 cut(s) 688, 1054
BciT130I CCWGG 2 cut(s) 24, 675
BcnI CCSGG 2 cut(s) 403, 714
BcoDI GTCTC 2 cut(s) 90, 924
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 2 cut(s) 562, 811
BisI GCNGC 1 cut(s) 842
BlsI GCNGC 1 cut(s) 843
Bme1390I CCNGG 4 cut(s) 24, 403, 675, 714
Bme18I GGWCC 2 cut(s) 677, 1037
BmgT120I GGNCC 3 cut(s) 677, 758, 1037
BmiI GGNNCC 1 cut(s) 853
BmrFI CCNGG 4 cut(s) 24, 403, 675, 714
BmsI GCATC 2 cut(s) 336, 1022
Bpu10I CCTNAGC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 395
BpuMI CCSGG 2 cut(s) 403, 714
BsaI GGTCTC 2 cut(s) 90, 924
BsaJI CCNNGG 2 cut(s) 23, 316
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 468
Bse21I CCTNAGG 1 cut(s) 652
BseBI CCWGG 2 cut(s) 24, 675
BseDI CCNNGG 2 cut(s) 23, 316
BseGI GGATG 1 cut(s) 1037
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 807
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 711
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 828
BseYI CCCAGC 1 cut(s) 661
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 2 cut(s) 355, 760
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 402, 714
BslFI GGGAC 2 cut(s) 91, 644
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 90, 924
BsmFI GGGAC 2 cut(s) 91, 644
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 2 cut(s) 355, 760
Bso31I GGTCTC 2 cut(s) 90, 924
Bsp119I TTCGAA 1 cut(s) 395
Bsp1286I GDGCHC 2 cut(s) 160, 714
Bsp143I GATC 3 cut(s) 334, 385, 519
BspACI CCGC 1 cut(s) 1035
BspANI GGCC 2 cut(s) 355, 760
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 1 cut(s) 853
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 2 cut(s) 562, 811
BspPI GGATC 2 cut(s) 342, 380
BspT104I TTCGAA 1 cut(s) 395
BspTNI GGTCTC 2 cut(s) 90, 924
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 2 cut(s) 23, 316
BssMI GATC 3 cut(s) 334, 385, 519
Bst2UI CCWGG 2 cut(s) 24, 675
Bst4CI ACNGT 1 cut(s) 781
Bst6I CTCTTC 2 cut(s) 218, 1047
BstBI TTCGAA 1 cut(s) 395
BstDEI CTNAG 3 cut(s) 249, 652, 816
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 1 cut(s) 1037
BstKTI GATC 3 cut(s) 337, 388, 522
BstMAI GTCTC 2 cut(s) 90, 924
BstMBI GATC 3 cut(s) 334, 385, 519
BstMWI GCNNNNNNNGC 3 cut(s) 449, 507, 838
BstNI CCWGG 2 cut(s) 24, 675
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 22, 401, 673, 712
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 828
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 652
BsuRI GGCC 2 cut(s) 355, 760
BtsCI GGATG 1 cut(s) 1037
BtsIMutI CAGTG 1 cut(s) 218
BveI ACCTGC 2 cut(s) 562, 811
Cfr13I GGNCC 3 cut(s) 677, 758, 1037
CseI GACGC 2 cut(s) 386, 847
Csp6I GTAC 1 cut(s) 551
CviAII CATG 7 cut(s) 81, 444, 632, 755, 867, 1055, 1072
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 249, 652, 816
DpnI GATC 3 cut(s) 336, 387, 521
DpnII GATC 3 cut(s) 334, 385, 519
Eam1104I CTCTTC 2 cut(s) 218, 1047
EarI CTCTTC 2 cut(s) 218, 1047
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 2 cut(s) 90, 924
Eco47I GGWCC 2 cut(s) 677, 1037
Eco57I CTGAAG 5 cut(s) 222, 242, 329, 455, 895
Eco81I CCTNAGG 1 cut(s) 652
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 22, 673
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 714
FaeI CATG 7 cut(s) 84, 447, 635, 758, 870, 1058, 1075
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 2 cut(s) 91, 644
FatI CATG 7 cut(s) 80, 443, 631, 754, 866, 1054, 1071
Fnu4HI GCNGC 1 cut(s) 842
FokI GGATG 1 cut(s) 1044
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 1 cut(s) 842
GluI GCNGC 1 cut(s) 842
GsaI CCCAGC 1 cut(s) 665
HaeIII GGCC 2 cut(s) 355, 760
HapII CCGG 2 cut(s) 402, 714
HgaI GACGC 2 cut(s) 386, 847
Hin1II CATG 7 cut(s) 84, 447, 635, 758, 870, 1058, 1075
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HinfI GANTC 5 cut(s) 427, 657, 940, 949, 1076
HpaII CCGG 2 cut(s) 402, 714
HphI GGTGA 2 cut(s) 200, 386
Hpy166II GTNNAC 3 cut(s) 158, 218, 777
Hpy188I TCNGA 6 cut(s) 309, 685, 737, 924, 1006, 1024
Hpy188III TCNNGA 2 cut(s) 241, 424
Hpy8I GTNNAC 3 cut(s) 158, 218, 777
HpyAV CCTTC 3 cut(s) 402, 452, 732
HpyCH4III ACNGT 1 cut(s) 781
HpyCH4V TGCA 9 cut(s) 158, 261, 349, 542, 557, 577, 754, 844, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 507, 838
HpyF3I CTNAG 3 cut(s) 249, 652, 816
Hsp92II CATG 7 cut(s) 84, 447, 635, 758, 870, 1058, 1075
Kzo9I GATC 3 cut(s) 334, 385, 519
Lsp1109I GCAGC 1 cut(s) 828
LweI GCATC 2 cut(s) 336, 1022
MaeIII GTNAC 2 cut(s) 137, 374
MalI GATC 3 cut(s) 336, 387, 521
MboI GATC 3 cut(s) 334, 385, 519
MboII GAAGA 8 cut(s) 235, 242, 322, 448, 716, 901, 1034, 1076
MfeI CAATTG 2 cut(s) 527, 617
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 160, 714
MlyI GAGTC 1 cut(s) 666
MnlI CCTC 9 cut(s) 169, 184, 219, 326, 399, 582, 732, 842, 1050
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 2 cut(s) 165, 967
MspI CCGG 2 cut(s) 402, 714
MspR9I CCNGG 4 cut(s) 24, 403, 675, 714
MunI CAATTG 2 cut(s) 527, 617
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 2 cut(s) 24, 675
MwoI GCNNNNNNNGC 3 cut(s) 449, 507, 838
NciI CCSGG 2 cut(s) 403, 714
NdeII GATC 3 cut(s) 334, 385, 519
NlaIII CATG 7 cut(s) 84, 447, 635, 758, 870, 1058, 1075
NlaIV GGNNCC 1 cut(s) 853
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 351
NspV TTCGAA 1 cut(s) 395
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 4 cut(s) 427, 940, 949, 1076
PflMI CCANNNNNTGG 1 cut(s) 68
PfoI TCCNGGA 2 cut(s) 401, 673
PkrI GCNGC 1 cut(s) 843
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 22, 673
PspEI GGTNACC 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 661
PspGI CCWGG 2 cut(s) 22, 673
PspN4I GGNNCC 1 cut(s) 853
PspPI GGNCC 3 cut(s) 677, 758, 1037
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 2 cut(s) 165, 967
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 1 cut(s) 842
Sau3AI GATC 3 cut(s) 334, 385, 519
Sau96I GGNCC 3 cut(s) 677, 758, 1037
SchI GAGTC 1 cut(s) 666
ScrFI CCNGG 4 cut(s) 24, 403, 675, 714
SduI GDGCHC 2 cut(s) 160, 714
SfaNI GCATC 2 cut(s) 336, 1022
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 395
SinI GGWCC 2 cut(s) 677, 1037
SmiMI CAYNNNNRTG 2 cut(s) 165, 967
SsiI CCGC 1 cut(s) 1035
StyD4I CCNGG 4 cut(s) 22, 401, 673, 712
TaaI ACNGT 1 cut(s) 781
TaqI TCGA 1 cut(s) 395
TfiI GAWTC 4 cut(s) 427, 940, 949, 1076
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 841
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 4 cut(s) 17, 281, 612, 620
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 68
VneI GTGCAC 1 cut(s) 156
VpaK11BI GGWCC 2 cut(s) 677, 1037
XapI RAATTY 3 cut(s) 57, 268, 536
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.