pycom13g03120

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009397
Physical Location & Seq
Reverse (-)
2109498 .. 2111987
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
ATGTTGAGTACTGGATTGCCGTTCACGCGTGGCCGCGGAGAGGATCGATTTTACGACCCGGCGAGAGCTCGTAGGGCCCACCAGAACCAGAAGGCGGAGCAACTTCGCAGAGCTCAGAGCGACGTCACGCCCAGTCCATCTCCTTCCTTGAAGGGTAACCCCAACCGGGAGCCGGAGAACCGGACCGGGTCTGATGAGCCGCCCCAGCCCGTCGCCGTGCCTGCTTTTGAGCCCGTCGTGAAACCCTTGAGTAATCTCGAGCGGTTCTTGCAGTCGATCTCTCCGTCCGTCCCGGCCCAGTGCCTTTCCAAGAGGACGATGAGAGGATTGAGTACATGCGACGTGGAATATCAGCCATACTTCGTTCTGGGGGATTTATGGGAGTCCTTCAAGGAGTGGAGTGCTTATGGTGCAGGAGTACCTCTGATTTTGAATGACAGTGACTCTGTGGTTCAGTACTACGTCCCTTACTTGTCCGGCATTCAAATATACGGCCACTCTGCGAAATTGGCAACGAAGACAGGGCGACCAGATGAGGACAGTGATAGTGATTTCAGAGATTCTAGCAGTGACGGTAGCTGTGATTACGAAATTCCTCGTACGATAGAAAGATTATCTTTGAGAGACCCACATTTACCACCCCACGAAGACTGCTCCAGTGATGAGGGCGAATCTATAAATTCTCAAGGTTGCTTACTGTTTGAGTATTTTGAACGGGACCTTCCTTATTGCCGTGAGCCTTTAGCTGACAAGATACTAGATCTCGCGTTCCATTTTCCTGAGCTAAAGATACTAAGAAGCTGTGATCTACTGCCAACCAGCTGGATATCTGTTGCATGGTATCCAATATATAGGATTCCAACAGGACCAACTTTAAAGGATCTTGATGCGTGCTTTCTAACGTACCATTCACTTTGTACACCTATGAGAGGTGTACAAGATGACCGGGCTCCTGTATTGACACATCCAAGTGACATGGACGGTGTCCCTAAGATGTCGTTACCTGCTTTTGGCCTTGCATCATACAAATTCAGAGGTTCCTTGTGGACGCCGAGTGGTGGATGTGAACGCCAGTTAGCCAGCTCTCTTTTGCAGGCTGCTGACGACTTTCTAAGAAAGCATCAGGTCAATCACCCAGATTTTCTGTTTTTTAGCCGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

388

Amino Acids

43.56

Weight (kDa)

5.45

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 84 - 384 2.7e-105 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc36I ACCTGC 1 cut(s) 1012
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 3 cut(s) 28, 36, 767
AciI CCGC 5 cut(s) 34, 36, 95, 200, 262
AclWI GGATC 2 cut(s) 51, 888
AcoI YGGCCR 2 cut(s) 31, 493
AcsI RAATTY 3 cut(s) 591, 679, 1028
AcyI GRCGYC 2 cut(s) 123, 1049
AfaI GTAC 8 cut(s) 10, 334, 420, 458, 601, 905, 919, 936
AfiI CCNNNNNNNGG 7 cut(s) 40, 94, 166, 172, 929, 1010, 1058
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 5 cut(s) 151, 391, 433, 485, 713
AjiI CACGTC 1 cut(s) 343
AluBI AGCT 8 cut(s) 68, 113, 579, 746, 784, 801, 822, 1083
AluI AGCT 8 cut(s) 68, 113, 579, 746, 784, 801, 822, 1083
Alw21I GWGCWC 2 cut(s) 70, 115
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 2 cut(s) 51, 888
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 5 cut(s) 31, 75, 294, 493, 1012
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 1097
ApoI RAATTY 3 cut(s) 591, 679, 1028
AspS9I GGNCC 6 cut(s) 75, 76, 183, 295, 718, 866
AsuC2I CCSGG 5 cut(s) 59, 167, 187, 293, 947
AsuHPI GGTGA 1 cut(s) 1124
AvaI CYCGRG 1 cut(s) 257
AvaII GGWCC 3 cut(s) 183, 718, 866
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 5 cut(s) 70, 79, 115, 234, 952
BbsI GAAGAC 2 cut(s) 524, 654
Bbv12I GWGCWC 2 cut(s) 70, 115
BbvI GCAGC 1 cut(s) 1084
BccI CCATC 1 cut(s) 145
BceAI ACGGC 5 cut(s) 4, 200, 508, 717, 1140
BciVI GTATCC 1 cut(s) 852
BcnI CCSGG 5 cut(s) 59, 167, 187, 293, 947
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 564, 758
BfuAI ACCTGC 1 cut(s) 1012
BfuI GTATCC 1 cut(s) 852
BglII AGATCT 1 cut(s) 760
BisI GCNGC 3 cut(s) 34, 200, 1098
BlsI GCNGC 3 cut(s) 35, 201, 1099
BmcAI AGTACT 2 cut(s) 10, 458
Bme1390I CCNGG 5 cut(s) 59, 167, 187, 293, 947
Bme18I GGWCC 3 cut(s) 183, 718, 866
BmeT110I CYCGRG 1 cut(s) 257
BmgBI CACGTC 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 75, 76, 183, 295, 718, 866
BmiI GGNNCC 5 cut(s) 77, 171, 719, 951, 1039
BmrFI CCNGG 5 cut(s) 59, 167, 187, 293, 947
BmrI ACTGGG 2 cut(s) 126, 292
BmsI GCATC 3 cut(s) 877, 1028, 1129
BmuI ACTGGG 2 cut(s) 126, 292
BpiI GAAGAC 2 cut(s) 524, 654
BpmI CTGGAG 1 cut(s) 640
Bpu10I CCTNAGC 1 cut(s) 780
BpuEI CTTGAG 2 cut(s) 268, 669
BpuMI CCSGG 5 cut(s) 59, 167, 187, 293, 947
Bsa29I ATCGAT 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 123, 1049
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 1 cut(s) 34
BsaWI WCCGGW 1 cut(s) 180
Bsc4I CCNNNNNNNGG 7 cut(s) 40, 94, 166, 172, 929, 1010, 1058
Bse1I ACTGG 5 cut(s) 16, 132, 298, 657, 1072
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 2 cut(s) 964, 1067
BseLI CCNNNNNNNGG 7 cut(s) 40, 94, 166, 172, 929, 1010, 1058
BseMII CTCAG 2 cut(s) 128, 771
BseNI ACTGG 5 cut(s) 16, 132, 298, 657, 1072
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 1084
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 3 cut(s) 28, 36, 767
BshFI GGCC 5 cut(s) 33, 77, 296, 495, 1014
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 70, 115
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 8 cut(s) 59, 166, 173, 181, 186, 293, 477, 946
BsiWI CGTACG 1 cut(s) 599
BslFI GGGAC 4 cut(s) 275, 449, 731, 971
BslI CCNNNNNNNGG 7 cut(s) 40, 94, 166, 172, 929, 1010, 1058
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 4 cut(s) 275, 449, 731, 971
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 5 cut(s) 33, 77, 296, 495, 1014
Bso31I GGTCTC 1 cut(s) 618
BsoBI CYCGRG 1 cut(s) 257
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 5 cut(s) 70, 79, 115, 234, 952
Bsp1407I TGTACA 2 cut(s) 917, 934
Bsp143I GATC 5 cut(s) 43, 276, 760, 805, 880
BspACI CCGC 5 cut(s) 34, 36, 95, 200, 262
BspANI GGCC 5 cut(s) 33, 77, 296, 495, 1014
BspCNI CTCAG 2 cut(s) 127, 772
BspDI ATCGAT 1 cut(s) 46
BspFNI CGCG 3 cut(s) 28, 36, 767
BspLI GGNNCC 5 cut(s) 77, 171, 719, 951, 1039
BspMI ACCTGC 1 cut(s) 1012
BspPI GGATC 2 cut(s) 51, 888
BspTNI GGTCTC 1 cut(s) 618
BsrBI CCGCTC 1 cut(s) 262
BsrGI TGTACA 2 cut(s) 917, 934
BsrI ACTGG 5 cut(s) 16, 132, 298, 657, 1072
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 5 cut(s) 43, 276, 760, 805, 880
BssNI GRCGYC 2 cut(s) 123, 1049
Bst4CI ACNGT 5 cut(s) 440, 542, 575, 699, 983
BstACI GRCGYC 2 cut(s) 123, 1049
BstAUI TGTACA 2 cut(s) 917, 934
BstC8I GCNNGC 4 cut(s) 222, 892, 1081, 1095
BstDEI CTNAG 5 cut(s) 114, 780, 794, 990, 1112
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 155
BstENI CCTNNNNNAGG 1 cut(s) 927
BstF5I GGATG 2 cut(s) 964, 1067
BstFNI CGCG 3 cut(s) 28, 36, 767
BstKTI GATC 5 cut(s) 46, 279, 763, 808, 883
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 5 cut(s) 43, 276, 760, 805, 880
BstMWI GCNNNNNNNGC 7 cut(s) 25, 74, 205, 221, 268, 410, 509
BstNSI RCATGY 1 cut(s) 339
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 5 cut(s) 57, 165, 185, 291, 945
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 3 cut(s) 28, 36, 767
BstV1I GCAGC 1 cut(s) 1084
BstV2I GAAGAC 2 cut(s) 524, 654
BstX2I RGATCY 2 cut(s) 760, 880
BstXI CCANNNNNNTGG 1 cut(s) 822
BstYI RGATCY 2 cut(s) 760, 880
Bsu15I ATCGAT 1 cut(s) 46
BsuI GTATCC 1 cut(s) 852
BsuRI GGCC 5 cut(s) 33, 77, 296, 495, 1014
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 964, 1067
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 5 cut(s) 305, 445, 547, 574, 664
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 4 cut(s) 222, 892, 1081, 1095
Cfr13I GGNCC 6 cut(s) 75, 76, 183, 295, 718, 866
Cfr42I CCGCGG 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 46
CpoI CGGWCCG 1 cut(s) 183
CseI GACGC 1 cut(s) 1057
Csp6I GTAC 8 cut(s) 9, 333, 419, 457, 600, 904, 918, 935
CspI CGGWCCG 1 cut(s) 183
CviAII CATG 3 cut(s) 336, 837, 976
CviQI GTAC 8 cut(s) 9, 333, 419, 457, 600, 904, 918, 935
DdeI CTNAG 5 cut(s) 114, 780, 794, 990, 1112
DpnI GATC 5 cut(s) 45, 278, 762, 807, 882
DpnII GATC 5 cut(s) 43, 276, 760, 805, 880
DraI TTTAAA 1 cut(s) 876
EaeI YGGCCR 2 cut(s) 31, 493
EciI GGCGGA 1 cut(s) 110
Ecl136II GAGCTC 2 cut(s) 68, 113
Eco24I GRGCYC 5 cut(s) 70, 79, 115, 234, 952
Eco31I GGTCTC 1 cut(s) 618
Eco32I GATATC 1 cut(s) 828
Eco47I GGWCC 3 cut(s) 183, 718, 866
Eco53kI GAGCTC 2 cut(s) 68, 113
Eco88I CYCGRG 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 155
EcoICRI GAGCTC 2 cut(s) 68, 113
EcoNI CCTNNNNNAGG 1 cut(s) 927
EcoO109I RGGNCCY 2 cut(s) 75, 718
EcoO65I GGTNACC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 828
EcoT38I GRGCYC 5 cut(s) 70, 79, 115, 234, 952
FaeI CATG 3 cut(s) 339, 840, 979
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 4 cut(s) 275, 449, 731, 971
FatI CATG 3 cut(s) 335, 836, 975
Fnu4HI GCNGC 3 cut(s) 34, 200, 1098
FokI GGATG 2 cut(s) 951, 1074
FriOI GRGCYC 5 cut(s) 70, 79, 115, 234, 952
Fsp4HI GCNGC 3 cut(s) 34, 200, 1098
FspBI CTAG 2 cut(s) 564, 758
GluI GCNGC 3 cut(s) 34, 200, 1098
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 5 cut(s) 33, 77, 296, 495, 1014
HapII CCGG 8 cut(s) 59, 166, 173, 181, 186, 293, 477, 946
HgaI GACGC 1 cut(s) 1057
Hin1I GRCGYC 2 cut(s) 123, 1049
Hin1II CATG 3 cut(s) 339, 840, 979
HinfI GANTC 5 cut(s) 383, 443, 560, 671, 856
HpaII CCGG 8 cut(s) 59, 166, 173, 181, 186, 293, 477, 946
HphI GGTGA 1 cut(s) 1124
Hpy166II GTNNAC 5 cut(s) 24, 920, 935, 1047, 1067
Hpy188I TCNGA 5 cut(s) 117, 193, 426, 557, 1034
Hpy188III TCNNGA 4 cut(s) 238, 257, 779, 884
Hpy8I GTNNAC 5 cut(s) 24, 920, 935, 1047, 1067
Hpy99I CGWCG 4 cut(s) 125, 215, 239, 344
HpyAV CCTTC 5 cut(s) 85, 145, 153, 397, 731
HpyCH4III ACNGT 5 cut(s) 440, 542, 575, 699, 983
HpyCH4IV ACGT 4 cut(s) 123, 342, 462, 902
HpyCH4V TGCA 5 cut(s) 271, 413, 836, 1019, 1093
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 74, 205, 221, 268, 410, 509
HpyF3I CTNAG 5 cut(s) 114, 780, 794, 990, 1112
HpySE526I ACGT 4 cut(s) 123, 342, 462, 902
Hsp92I GRCGYC 2 cut(s) 123, 1049
Hsp92II CATG 3 cut(s) 339, 840, 979
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 5 cut(s) 43, 276, 760, 805, 880
LmnI GCTCC 4 cut(s) 97, 169, 659, 955
Lsp1109I GCAGC 1 cut(s) 1084
LweI GCATC 3 cut(s) 877, 1028, 1129
MaeI CTAG 2 cut(s) 564, 758
MaeII ACGT 4 cut(s) 123, 342, 462, 902
MaeIII GTNAC 6 cut(s) 124, 155, 440, 569, 971, 999
MalI GATC 5 cut(s) 45, 278, 762, 807, 882
MbiI CCGCTC 1 cut(s) 262
MboI GATC 5 cut(s) 43, 276, 760, 805, 880
MboII GAAGA 2 cut(s) 529, 659
MflI RGATCY 2 cut(s) 760, 880
MhlI GDGCHC 5 cut(s) 70, 79, 115, 234, 952
MluCI AATT 4 cut(s) 506, 591, 679, 1028
MluI ACGCGT 1 cut(s) 26
MlyI GAGTC 2 cut(s) 392, 437
MmeI TCCRAC 1 cut(s) 884
MnlI CCTC 9 cut(s) 34, 306, 317, 432, 529, 606, 658, 923, 1028
MseI TTAA 1 cut(s) 875
MslI CAYNNNNRTG 1 cut(s) 969
MspA1I CMGCKG 2 cut(s) 36, 822
MspI CCGG 8 cut(s) 59, 166, 173, 181, 186, 293, 477, 946
MspR9I CCNGG 5 cut(s) 59, 167, 187, 293, 947
Mva1269I GAATGC 1 cut(s) 480
MvnI CGCG 3 cut(s) 28, 36, 767
MwoI GCNNNNNNNGC 7 cut(s) 25, 74, 205, 221, 268, 410, 509
NciI CCSGG 5 cut(s) 59, 167, 187, 293, 947
NdeII GATC 5 cut(s) 43, 276, 760, 805, 880
NlaIII CATG 3 cut(s) 339, 840, 979
NlaIV GGNNCC 5 cut(s) 77, 171, 719, 951, 1039
NmeAIII GCCGAG 1 cut(s) 1077
NmuCI GTSAC 4 cut(s) 124, 440, 569, 971
NspI RCATGY 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 3 cut(s) 560, 671, 856
Pfl23II CGTACG 1 cut(s) 599
PflFI GACNNNGTC 2 cut(s) 187, 983
PkrI GCNGC 3 cut(s) 35, 201, 1099
PleI GAGTC 2 cut(s) 391, 437
PpsI GAGTC 2 cut(s) 391, 437
PpuMI RGGWCCY 1 cut(s) 718
Psp124BI GAGCTC 2 cut(s) 70, 115
Psp5II RGGWCCY 1 cut(s) 718
PspEI GGTNACC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 204
PspLI CGTACG 1 cut(s) 599
PspN4I GGNNCC 5 cut(s) 77, 171, 719, 951, 1039
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 6 cut(s) 75, 76, 183, 295, 718, 866
PspPPI RGGWCCY 1 cut(s) 718
PsuI RGATCY 2 cut(s) 760, 880
PsyI GACNNNGTC 2 cut(s) 187, 983
PvuII CAGCTG 1 cut(s) 822
RsaI GTAC 8 cut(s) 10, 334, 420, 458, 601, 905, 919, 936
RsaNI GTAC 8 cut(s) 9, 333, 419, 457, 600, 904, 918, 935
RseI CAYNNNNRTG 1 cut(s) 969
Rsr2I CGGWCCG 1 cut(s) 183
RsrII CGGWCCG 1 cut(s) 183
SacI GAGCTC 2 cut(s) 70, 115
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 875
SatI GCNGC 3 cut(s) 34, 200, 1098
Sau3AI GATC 5 cut(s) 43, 276, 760, 805, 880
Sau96I GGNCC 6 cut(s) 75, 76, 183, 295, 718, 866
ScaI AGTACT 2 cut(s) 10, 458
SchI GAGTC 2 cut(s) 392, 437
ScrFI CCNGG 5 cut(s) 59, 167, 187, 293, 947
SduI GDGCHC 5 cut(s) 70, 79, 115, 234, 952
SfaNI GCATC 3 cut(s) 877, 1028, 1129
Sfr274I CTCGAG 1 cut(s) 257
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 183, 718, 866
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 969
SmlI CTYRAG 3 cut(s) 247, 257, 684
SmoI CTYRAG 3 cut(s) 247, 257, 684
Sse9I AATT 4 cut(s) 506, 591, 679, 1028
SsiI CCGC 5 cut(s) 34, 36, 95, 200, 262
SspMI CTAG 2 cut(s) 564, 758
SstI GAGCTC 2 cut(s) 70, 115
StyD4I CCNGG 5 cut(s) 57, 165, 185, 291, 945
TaaI ACNGT 5 cut(s) 440, 542, 575, 699, 983
TaiI ACGT 4 cut(s) 126, 345, 465, 905
TaqI TCGA 3 cut(s) 46, 258, 275
TasI AATT 4 cut(s) 506, 591, 679, 1028
TatI WGTACW 5 cut(s) 8, 332, 456, 917, 934
TauI GCSGC 2 cut(s) 36, 202
TfiI GAWTC 3 cut(s) 560, 671, 856
Tru1I TTAA 1 cut(s) 875
Tru9I TTAA 1 cut(s) 875
TscAI CASTG 5 cut(s) 305, 445, 547, 574, 664
TseFI GTSAC 4 cut(s) 124, 440, 569, 971
TseI GCWGC 1 cut(s) 1097
Tsp45I GTSAC 4 cut(s) 124, 440, 569, 971
TspGWI ACGGA 2 cut(s) 273, 277
TspRI CASTG 5 cut(s) 305, 445, 547, 574, 664
Tth111I GACNNNGTC 2 cut(s) 187, 983
VpaK11BI GGWCC 3 cut(s) 183, 718, 866
XagI CCTNNNNNAGG 1 cut(s) 927
XapI RAATTY 3 cut(s) 591, 679, 1028
XceI RCATGY 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 2 cut(s) 564, 758
ZraI GACGTC 1 cut(s) 124
ZrmI AGTACT 2 cut(s) 10, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.