pycom13g04120

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012088
Physical Location & Seq
Reverse (-)
2764214 .. 2766159
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
ATGATGTGTGGGAAGAAAGAAGATCAAGGGGAGTGCTCTCAGTCAGTCCAGAACCTACAAGCTTTCCAAGAACACTTGTTTCTCCAACAACAACAACATCATCAGATGCAACAACAACAACATCATCAGATGCAACAACAACAAGGTTTGATTTTTCCACATGATCATCAACCTCCTCCTCCAATCTTGCAGCCATGGACTCTCCCACCGAACCACACCTTCAACCCAACCGCCCACGACCCATTTCTCCTCTCAACTCCTCCCCCAATTCCGTCGTCATCATCCTATGCTTCTTTCTTCAATCGAAGAGCTCCTTCTCTCCAGCTCACATACGACGGTTCAGCGTCTGACCACCACCACCACCTCAGAATTTTGTCCGAGACGCTTGGACCGATGGTTCAACCCGGTTCGGGCCCTTTCGGTCTTCAGGCCGAGTTAGGAAAGTTGACCGCCCAAGAAATCATGGACGCCAAGGCACTCGCCGCTTCTAAGAGTCACAGCGAGGCTGAGAGGAGACGAAGAGAGAGAATCAACAACCATCTCGCCAAGTTGCGTAGCTTATTGCCCAGCACCACCAAAACGGACAAAGCTTCATTGCTAGCGGAAGTGATACAACATGTGAAAGAGCTGAAACGCCAAACTTCTCTGATCGCCGAGACGAGTCCGGTACCGACAGAAACTGACGAACTAATAGTAGACGATGAATCGGACGAGGACGGTAAGTTTGTGATAAAGGCCTCACTTTGCTGCGAGGACCGATCGGATCTCTTGCCCGACCTAATCAAGACATTGAAAGCCTTGCGCTTGAGAACGCTCAAAGCTGAGATCACAACACTCGGCGGACGTGTGAAGAACGTGTTGTTTATAACCGGAGAAGAGGACTCAAGTAATAGCGGAGGGGAGCAAGTACAAATGCCGCATCAGCAGTACTGTAAAAGTTCGATACAAGAAGCGCTGAAGGCGGTCATGGAGAAGACCGCCGGCGGTGGTGGTGATCAGGATCAGTCTTCCTCAGGGAGTGCTAAGAGACAAAGGACTAATAACATCAATATCCTTGAACACAGGTCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

358

Amino Acids

39.74

Weight (kDa)

6.41

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 164 - 211 8.7e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68810
fragaria_vesca FvH4_4g28130 FvH4_4g28130
malus_domestica MD13G1047100.v1.1 MD16G1048700.v1.1
prunus_persica Prupe.1G304900_v2.0.a1
pyrus_communis pycom13g04120 pycom16g04260
rosa_chinensis RchiOBHm_Chr4g0435901
rosa_laevigata RLG00000006551
rosa_multiflora Rmu_sc0003165.1_g000008
rosa_roxburghii Rroxscaffold_5G00377070
rosa_rugosa Rorug04G0290700 Rorug04G0290700
rosa_samantha Rh4AG344900 Rh4BG353700 Rh4CG368100 Rh4DG347500
rosa_wichuraiana Rw4G030120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
Acc65I GGTACC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 696
AclWI GGATC 2 cut(s) 771, 1008
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 2 cut(s) 410, 977
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 3 cut(s) 669, 909, 929
AfeI AGCGCT 1 cut(s) 954
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 3 cut(s) 616, 844, 855
AgsI TTSAA 5 cut(s) 223, 301, 401, 793, 1058
AjiI CACGTC 1 cut(s) 845
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 7 cut(s) 62, 311, 325, 558, 590, 628, 821
AluI AGCT 7 cut(s) 62, 311, 325, 558, 590, 628, 821
Alw21I GWGCWC 2 cut(s) 38, 313
Alw26I GTCTC 4 cut(s) 374, 508, 650, 1021
AlwI GGATC 2 cut(s) 771, 1008
AlwNI CAGNNNCTG 2 cut(s) 347, 680
Aor51HI AGCGCT 1 cut(s) 954
AoxI GGCC 3 cut(s) 412, 429, 735
ApaI GGGCCC 1 cut(s) 416
ApeKI GCWGC 2 cut(s) 190, 747
ApoI RAATTY 1 cut(s) 369
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
Asp718I GGTACC 1 cut(s) 667
AspLEI GCGC 2 cut(s) 804, 955
AspS9I GGNCC 4 cut(s) 389, 412, 413, 754
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 1004
AsuNHI GCTAGC 1 cut(s) 598
AvaII GGWCC 2 cut(s) 389, 754
AxyI CCTNAGG 1 cut(s) 1012
BaeGI GKGCMC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 2 cut(s) 313, 416
BbsI GAAGAC 3 cut(s) 416, 980, 999
Bbv12I GWGCWC 2 cut(s) 38, 313
BbvI GCAGC 2 cut(s) 202, 734
BccI CCATC 2 cut(s) 388, 546
BclI TGATCA 2 cut(s) 163, 994
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 4 cut(s) 374, 508, 650, 1021
BfaI CTAG 1 cut(s) 599
BfoI RGCGCY 1 cut(s) 956
BisI GCNGC 4 cut(s) 191, 483, 748, 917
BlsI GCNGC 4 cut(s) 192, 484, 749, 918
BmcAI AGTACT 1 cut(s) 929
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 2 cut(s) 389, 754
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 4 cut(s) 389, 412, 413, 754
BmiI GGNNCC 2 cut(s) 414, 669
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 96, 120, 928
BmtI GCTAGC 1 cut(s) 602
BpiI GAAGAC 3 cut(s) 416, 980, 999
BpmI CTGGAG 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 826, 868
BpuMI CCSGG 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 194, 471
BsaWI WCCGGW 2 cut(s) 664, 869
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 980
Bse21I CCTNAGG 1 cut(s) 1012
Bse3DI GCAATG 1 cut(s) 593
Bse8I GATNNNNATC 1 cut(s) 999
BseDI CCNNGG 2 cut(s) 194, 471
BseGI GGATG 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 5 cut(s) 53, 379, 498, 813, 1026
BseRI GAGGAG 5 cut(s) 165, 168, 239, 249, 526
BseSI GKGCMC 1 cut(s) 416
BseXI GCAGC 2 cut(s) 202, 734
BseYI CCCAGC 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 761
BshFI GGCC 3 cut(s) 414, 431, 737
BshNI GGYRCC 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 761
BsiHKAI GWGCWC 2 cut(s) 38, 313
BsiSI CCGG 4 cut(s) 405, 665, 870, 981
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 4 cut(s) 374, 508, 650, 1021
BsmBI CGTCTC 3 cut(s) 374, 508, 650
BsnI GGCC 3 cut(s) 414, 431, 737
Bsp120I GGGCCC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 38, 313, 416
Bsp143I GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
Bsp19I CCATGG 1 cut(s) 194
BspANI GGCC 3 cut(s) 414, 431, 737
BspCNI CTCAG 5 cut(s) 52, 378, 499, 814, 1025
BspLI GGNNCC 2 cut(s) 414, 669
BspOI GCTAGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 771, 1008
BspQI GCTCTTC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 980
BssAI RCCGGY 1 cut(s) 980
BssECI CCNNGG 2 cut(s) 194, 471
BssMI GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
BssNI GRCGYC 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 194, 471
Bst4CI ACNGT 3 cut(s) 338, 719, 932
Bst6I CTCTTC 3 cut(s) 301, 514, 870
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 600, 982
BstDEI CTNAG 7 cut(s) 39, 365, 489, 507, 822, 1012, 1023
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 281
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 2 cut(s) 804, 955
BstKTI GATC 8 cut(s) 25, 166, 651, 761, 766, 828, 997, 1003
BstMAI GTCTC 4 cut(s) 374, 508, 650, 1021
BstMBI GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
BstMCI CGRYCG 1 cut(s) 761
BstMWI GCNNNNNNNGC 3 cut(s) 482, 922, 959
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 416
BstV1I GCAGC 2 cut(s) 202, 734
BstV2I GAAGAC 3 cut(s) 416, 980, 999
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
Bsu36I CCTNAGG 1 cut(s) 1012
BsuRI GGCC 3 cut(s) 414, 431, 737
BtgI CCRYGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 600, 982
CaiI CAGNNNCTG 2 cut(s) 347, 680
CfoI GCGC 2 cut(s) 804, 955
Cfr10I RCCGGY 1 cut(s) 980
Cfr13I GGNCC 4 cut(s) 389, 412, 413, 754
CseI GACGC 3 cut(s) 333, 391, 476
Csp6I GTAC 3 cut(s) 668, 908, 928
CviAII CATG 5 cut(s) 161, 195, 463, 617, 967
CviQI GTAC 3 cut(s) 668, 908, 928
DdeI CTNAG 7 cut(s) 39, 365, 489, 507, 822, 1012, 1023
DpnI GATC 8 cut(s) 24, 165, 650, 760, 765, 827, 996, 1002
DpnII GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
Eam1104I CTCTTC 3 cut(s) 301, 514, 870
EarI CTCTTC 3 cut(s) 301, 514, 870
EciI GGCGGA 1 cut(s) 855
Ecl136II GAGCTC 1 cut(s) 311
Eco130I CCWWGG 2 cut(s) 194, 471
Eco147I AGGCCT 1 cut(s) 737
Eco24I GRGCYC 2 cut(s) 313, 416
Eco47I GGWCC 2 cut(s) 389, 754
Eco47III AGCGCT 1 cut(s) 954
Eco53kI GAGCTC 1 cut(s) 311
Eco57I CTGAAG 2 cut(s) 410, 977
Eco81I CCTNAGG 1 cut(s) 1012
EcoICRI GAGCTC 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 194, 471
EcoT38I GRGCYC 2 cut(s) 313, 416
ErhI CCWWGG 2 cut(s) 194, 471
Esp3I CGTCTC 3 cut(s) 374, 508, 650
FaeI CATG 5 cut(s) 164, 198, 466, 620, 970
FaiI YATR 8 cut(s) 162, 196, 288, 331, 464, 618, 866, 968
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FatI CATG 5 cut(s) 160, 194, 462, 616, 966
FbaI TGATCA 2 cut(s) 163, 994
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 191, 483, 748, 917
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 2 cut(s) 313, 416
Fsp4HI GCNGC 4 cut(s) 191, 483, 748, 917
FspBI CTAG 1 cut(s) 599
GlaI GCGC 2 cut(s) 803, 954
GluI GCNGC 4 cut(s) 191, 483, 748, 917
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 956
HaeIII GGCC 3 cut(s) 414, 431, 737
HapII CCGG 4 cut(s) 405, 665, 870, 981
HgaI GACGC 3 cut(s) 333, 391, 476
HhaI GCGC 2 cut(s) 804, 955
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 5 cut(s) 164, 198, 466, 620, 970
Hin6I GCGC 2 cut(s) 802, 953
HinP1I GCGC 2 cut(s) 802, 953
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 2 cut(s) 60, 588
HinfI GANTC 6 cut(s) 199, 493, 528, 661, 704, 881
HpaII CCGG 4 cut(s) 405, 665, 870, 981
HphI GGTGA 1 cut(s) 1004
Hpy166II GTNNAC 2 cut(s) 447, 697
Hpy188I TCNGA 8 cut(s) 105, 129, 349, 368, 379, 648, 709, 763
Hpy188III TCNNGA 3 cut(s) 49, 784, 998
Hpy8I GTNNAC 2 cut(s) 447, 697
Hpy99I CGWCG 2 cut(s) 277, 338
HpyAV CCTTC 3 cut(s) 229, 324, 952
HpyCH4III ACNGT 3 cut(s) 338, 719, 932
HpyCH4IV ACGT 2 cut(s) 844, 855
HpyCH4V TGCA 3 cut(s) 109, 133, 190
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 922, 959
HpyF3I CTNAG 7 cut(s) 39, 365, 489, 507, 822, 1012, 1023
HpySE526I ACGT 2 cut(s) 844, 855
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 5 cut(s) 164, 198, 466, 620, 970
HspAI GCGC 2 cut(s) 802, 953
KpnI GGTACC 1 cut(s) 671
KroI GCCGGC 1 cut(s) 980
KroNI GCCGGC 1 cut(s) 982
Ksp22I TGATCA 2 cut(s) 163, 994
Kzo9I GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
LguI GCTCTTC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 316, 901
Lsp1109I GCAGC 2 cut(s) 202, 734
LweI GCATC 3 cut(s) 96, 120, 928
MaeI CTAG 1 cut(s) 599
MaeII ACGT 2 cut(s) 844, 855
MaeIII GTNAC 1 cut(s) 494
MalI GATC 8 cut(s) 24, 165, 650, 760, 765, 827, 996, 1002
MboI GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 3 cut(s) 38, 313, 416
MluCI AATT 2 cut(s) 267, 369
MlyI GAGTC 4 cut(s) 193, 502, 670, 875
MmeI TCCRAC 1 cut(s) 109
MreI CGCCGGCG 1 cut(s) 980
MroNI GCCGGC 1 cut(s) 980
MspI CCGG 4 cut(s) 405, 665, 870, 981
MspR9I CCNGG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 482, 922, 959
NaeI GCCGGC 1 cut(s) 982
NciI CCSGG 1 cut(s) 405
NcoI CCATGG 1 cut(s) 194
NdeII GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
NgoMIV GCCGGC 1 cut(s) 980
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 5 cut(s) 164, 198, 466, 620, 970
NlaIV GGNNCC 2 cut(s) 414, 669
NmeAIII GCCGAG 3 cut(s) 457, 679, 816
NmuCI GTSAC 1 cut(s) 494
NspI RCATGY 1 cut(s) 620
PceI AGGCCT 1 cut(s) 737
PciI ACATGT 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PdiI GCCGGC 1 cut(s) 982
PfeI GAWTC 2 cut(s) 528, 704
PkrI GCNGC 4 cut(s) 192, 484, 749, 918
Ple19I CGATCG 1 cut(s) 761
PleI GAGTC 4 cut(s) 193, 501, 669, 875
PpsI GAGTC 4 cut(s) 193, 501, 669, 875
PscI ACATGT 1 cut(s) 616
PsiI TTATAA 1 cut(s) 866
Psp124BI GAGCTC 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 566
PspN4I GGNNCC 2 cut(s) 414, 669
PspOMI GGGCCC 1 cut(s) 412
PspPI GGNCC 4 cut(s) 389, 412, 413, 754
PstNI CAGNNNCTG 2 cut(s) 347, 680
PsuI RGATCY 1 cut(s) 763
PvuI CGATCG 1 cut(s) 761
RsaI GTAC 3 cut(s) 669, 909, 929
RsaNI GTAC 3 cut(s) 668, 908, 928
SacI GAGCTC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 301
SatI GCNGC 4 cut(s) 191, 483, 748, 917
Sau3AI GATC 8 cut(s) 22, 163, 648, 758, 763, 825, 994, 1000
Sau96I GGNCC 4 cut(s) 389, 412, 413, 754
ScaI AGTACT 1 cut(s) 929
SchI GAGTC 4 cut(s) 193, 502, 670, 875
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 3 cut(s) 38, 313, 416
SfaNI GCATC 3 cut(s) 96, 120, 928
SgrAI CRCCGGYG 1 cut(s) 980
SinI GGWCC 2 cut(s) 389, 754
SmlI CTYRAG 2 cut(s) 805, 883
SmoI CTYRAG 2 cut(s) 805, 883
Sse9I AATT 2 cut(s) 267, 369
SseBI AGGCCT 1 cut(s) 737
SspMI CTAG 1 cut(s) 599
SstI GAGCTC 1 cut(s) 313
StuI AGGCCT 1 cut(s) 737
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 2 cut(s) 194, 471
TaaI ACNGT 3 cut(s) 338, 719, 932
TaiI ACGT 2 cut(s) 847, 858
TaqI TCGA 2 cut(s) 304, 941
TaqII GACCGA 3 cut(s) 406, 410, 771
TasI AATT 2 cut(s) 267, 369
TatI WGTACW 2 cut(s) 907, 927
TauI GCSGC 2 cut(s) 485, 919
TfiI GAWTC 2 cut(s) 528, 704
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 2 cut(s) 190, 747
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 582, 717
TspGWI ACGGA 2 cut(s) 261, 596
VpaK11BI GGWCC 2 cut(s) 389, 754
XapI RAATTY 1 cut(s) 369
XceI RCATGY 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 696
XspI CTAG 1 cut(s) 599
ZrmI AGTACT 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.