pycom13g07340

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015022
Physical Location & Seq
Forward (+)
4868956 .. 4870128
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07340.1

Sequence Viewer

Length: 1173 bp
ATGCTCCCATTCCGGCTGTACGCCGCCGTTTTGTTCGTCTCCAGTATCTCCCTCCTCTTCCCCCCCTTCTGCATCGGGACTCGCTCATTCCCGACAAGGGCGATCGACGGCGGTGATGCCTTCGAACTGGGCTCCGCCGCCTGGGCCCGATTCTCCGAAGCCCCCGACTACCGAAACGGCGCCGAATGCGCCGTTTCGTTGAACCGGGAAATGGTGTCCTCCTGCGACCCGTCGCTGGTTCACATCGCCATGACTCTCGACTCCGAGTACCTCCGGGGGTCGGTAGCTGCCGTGCACTCCGTCATCAAGCACGCTTCTTGCCCGGAAAATGTCTTTTTCCACTTCATCGCAGCCGAGTTCGACCCCGCGAGTCCCCGGGTCCTGACCCAACTCGTCCGATCCACCTTTCCCTCGCTTAATTTCAAGGTCTACATCTTCCGGGAGGACACCGTCATTAATCTCATCTCGTCGTCGATTCGGCAGGCGCTCGAGAACCCGCTCAACTACGCGAGAAATTACCTGGGCGACATTTTGGGCCGGTGCGTGGACCGGGTCATTTACTTGGACTCCGATTTACTGGTGGTCGACGACATTCACAAGCTTTGGAACATTTCGCTCACCGGGTCGCGGGTCATCGGAGCCCCGGAGTACTGCCACGCCAACTTTACCAAGTACTTCACCGACGGGTTCTGGTCCGACCCGGTTCTCTCCCGGGTTTTTTCCTCAAGAAACCCCTGCTATTTCAACACCGGTGTGATGGTGATGGACCTGGTGAGGTGGAGGGAGGGAAATTACCGAAAGAGGATCGAGAACTGGATGGAATTACAGAGAAAGCGAAGGATTTACGAGCTGGGTTCTCTGCCGCCGTTCCTACTCGTCTTCGCCGGCAACGTGGAGGCCATAGACCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAATGTCAGAGGCAGCTGCCGGTCTCTGCACCCGGGTCCGGTCAGCCTCCTCCATTGGAGCGGCAAGGGAAAGCCGTGGGTCAGAATCGAATCCAAAAACCCGTGCCCGCTGGACCACCTCTGGGAGCCTTACGATCTTTACAAGCCGATCCACCACCACAACCCGGCGAAGTTTCAATCCTTATCGTCGATCTCTGCATCTACATTGATCTTGTTTTCGAGCTATTTGTCGTGA

Protein Analysis

391

Amino Acids

44.2

Weight (kDa)

8.05

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 81 - 342 2.5e-55 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70090 AT1G70090
fragaria_vesca FvH4_4g35260
prunus_persica Prupe.1G262000_v2.0.a1
pyrus_communis pycom13g07340 pycom16g07300
rosa_chinensis RchiOBHm_Chr4g0444871
rosa_laevigata RLG00000005793
rosa_multiflora Rmu_sc0006845.1_g000006
rosa_roxburghii Rroxscaffold_5G00385360
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana Rw4G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 2 cut(s) 499, 999
AccI GTMKAC 2 cut(s) 429, 585
AccII CGCG 3 cut(s) 368, 509, 628
AclWI GGATC 3 cut(s) 393, 812, 1081
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 4 cut(s) 20, 269, 650, 674
AgeI ACCGGT 2 cut(s) 749, 909
AgsI TTSAA 4 cut(s) 202, 424, 745, 1115
AjnI CCWGG 3 cut(s) 140, 519, 768
AleI CACNNNNGTG 1 cut(s) 752
AluBI AGCT 5 cut(s) 287, 601, 850, 954, 1161
AluI AGCT 5 cut(s) 287, 601, 850, 954, 1161
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 43, 966
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 3 cut(s) 393, 812, 1081
Ama87I CYCGRG 4 cut(s) 375, 488, 711, 970
AoxI GGCC 4 cut(s) 144, 535, 897, 925
ApaI GGGCCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 4 cut(s) 287, 350, 951, 954
AseI ATTAAT 1 cut(s) 456
AsiGI ACCGGT 2 cut(s) 749, 909
AspLEI GCGC 3 cut(s) 182, 191, 487
AspS9I GGNCC 9 cut(s) 144, 145, 379, 535, 547, 693, 766, 974, 1051
AsuHPI GGTGA 5 cut(s) 125, 610, 670, 772, 784
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 4 cut(s) 375, 488, 711, 970
AvaII GGWCC 6 cut(s) 379, 547, 693, 766, 974, 1051
BaeGI GKGCMC 3 cut(s) 148, 297, 1046
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 3 cut(s) 134, 148, 643
BbsI GAAGAC 1 cut(s) 871
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 4 cut(s) 274, 362, 941, 963
BccI CCATC 3 cut(s) 751, 757, 811
BceAI ACGGC 8 cut(s) 11, 124, 176, 193, 275, 850, 940, 997
BciT130I CCWGG 3 cut(s) 142, 521, 770
BcoDI GTCTC 2 cut(s) 43, 966
BfoI RGCGCY 2 cut(s) 183, 488
BglI GCCNNNNNGGC 2 cut(s) 143, 933
BisI GCNGC 9 cut(s) 24, 138, 288, 351, 863, 934, 952, 955, 1000
BlsI GCNGC 9 cut(s) 25, 139, 289, 352, 864, 935, 953, 956, 1001
BmcAI AGTACT 2 cut(s) 650, 674
Bme18I GGWCC 6 cut(s) 379, 547, 693, 766, 974, 1051
BmeT110I CYCGRG 4 cut(s) 375, 488, 711, 970
BmgT120I GGNCC 9 cut(s) 144, 145, 379, 535, 547, 693, 766, 974, 1051
BmiI GGNNCC 8 cut(s) 133, 146, 181, 380, 640, 917, 975, 1065
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 81, 106, 1145
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 25
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 709
BsaHI GRCGYC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 966
BsaWI WCCGGW 3 cut(s) 749, 909, 976
BsaXI ACNNNNNCTCC 2 cut(s) 551, 581
Bse118I RCCGGY 5 cut(s) 537, 749, 884, 909, 957
Bse1I ACTGG 4 cut(s) 42, 132, 582, 818
BseBI CCWGG 3 cut(s) 142, 521, 770
BseGI GGATG 1 cut(s) 822
BseNI ACTGG 4 cut(s) 42, 132, 582, 818
BseRI GAGGAG 2 cut(s) 44, 977
BseSI GKGCMC 3 cut(s) 148, 297, 1046
BseXI GCAGC 4 cut(s) 274, 362, 941, 963
BseYI CCCAGC 1 cut(s) 850
BsgI GTGCAG 1 cut(s) 950
Bsh1236I CGCG 3 cut(s) 368, 509, 628
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 4 cut(s) 146, 537, 899, 927
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 2 cut(s) 749, 909
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 4 cut(s) 375, 488, 711, 970
BslFI GGGAC 2 cut(s) 91, 357
BsmAI GTCTC 2 cut(s) 43, 966
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 91, 357
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 4 cut(s) 146, 537, 899, 927
Bso31I GGTCTC 1 cut(s) 966
BsoBI CYCGRG 4 cut(s) 375, 488, 711, 970
Bsp119I TTCGAA 1 cut(s) 123
Bsp120I GGGCCC 1 cut(s) 144
Bsp1286I GDGCHC 5 cut(s) 134, 148, 297, 643, 1046
Bsp143I GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
BspANI GGCC 4 cut(s) 146, 537, 899, 927
BspFNI CGCG 3 cut(s) 368, 509, 628
BspLI GGNNCC 8 cut(s) 133, 146, 181, 380, 640, 917, 975, 1065
BspPI GGATC 3 cut(s) 393, 812, 1081
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 966
BsrBI CCGCTC 2 cut(s) 499, 999
BsrFI RCCGGY 5 cut(s) 537, 749, 884, 909, 957
BsrI ACTGG 4 cut(s) 42, 132, 582, 818
BssAI RCCGGY 5 cut(s) 537, 749, 884, 909, 957
BssMI GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
BssNI GRCGYC 1 cut(s) 180
Bst2UI CCWGG 3 cut(s) 142, 521, 770
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 180
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 4 cut(s) 312, 483, 886, 1046
BstDSI CCRYGG 1 cut(s) 1013
BstF5I GGATG 1 cut(s) 822
BstFNI CGCG 3 cut(s) 368, 509, 628
BstH2I RGCGCY 2 cut(s) 183, 488
BstHHI GCGC 3 cut(s) 182, 191, 487
BstKTI GATC 7 cut(s) 105, 401, 807, 1075, 1089, 1131, 1149
BstMAI GTCTC 2 cut(s) 43, 966
BstMBI GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 4 cut(s) 143, 186, 188, 933
BstNI CCWGG 3 cut(s) 142, 521, 770
BstSLI GKGCMC 3 cut(s) 148, 297, 1046
BstUI CGCG 3 cut(s) 368, 509, 628
BstV1I GCAGC 4 cut(s) 274, 362, 941, 963
BstV2I GAAGAC 1 cut(s) 871
BsuRI GGCC 4 cut(s) 146, 537, 899, 927
BtgI CCRYGG 1 cut(s) 1013
BtgZI GCGATG 2 cut(s) 229, 331
BtsCI GGATG 1 cut(s) 822
Cac8I GCNNGC 4 cut(s) 312, 483, 886, 1046
CfoI GCGC 3 cut(s) 182, 191, 487
Cfr10I RCCGGY 5 cut(s) 537, 749, 884, 909, 957
Cfr13I GGNCC 9 cut(s) 144, 145, 379, 535, 547, 693, 766, 974, 1051
Cfr9I CCCGGG 3 cut(s) 375, 711, 970
CsiI ACCWGGT 1 cut(s) 768
Csp6I GTAC 4 cut(s) 19, 268, 649, 673
CspAI ACCGGT 2 cut(s) 749, 909
CviAII CATG 1 cut(s) 250
CviQI GTAC 4 cut(s) 19, 268, 649, 673
DinI GGCGCC 1 cut(s) 181
DpnI GATC 7 cut(s) 104, 400, 806, 1074, 1088, 1130, 1148
DpnII GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 124
Eco24I GRGCYC 3 cut(s) 134, 148, 643
Eco31I GGTCTC 1 cut(s) 966
Eco47I GGWCC 6 cut(s) 379, 547, 693, 766, 974, 1051
Eco88I CYCGRG 4 cut(s) 375, 488, 711, 970
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 3 cut(s) 140, 519, 768
EcoT38I GRGCYC 3 cut(s) 134, 148, 643
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 251, 902
FaqI GGGAC 2 cut(s) 91, 357
FatI CATG 1 cut(s) 249
FauI CCCGC 4 cut(s) 373, 504, 621, 1053
FblI GTMKAC 2 cut(s) 429, 585
Fnu4HI GCNGC 9 cut(s) 24, 138, 288, 351, 863, 934, 952, 955, 1000
FokI GGATG 1 cut(s) 829
FriOI GRGCYC 3 cut(s) 134, 148, 643
Fsp4HI GCNGC 9 cut(s) 24, 138, 288, 351, 863, 934, 952, 955, 1000
GlaI GCGC 3 cut(s) 181, 190, 486
GluI GCNGC 9 cut(s) 24, 138, 288, 351, 863, 934, 952, 955, 1000
GsaI CCCAGC 1 cut(s) 854
GsuI CTGGAG 1 cut(s) 25
HaeII RGCGCY 2 cut(s) 183, 488
HaeIII GGCC 4 cut(s) 146, 537, 899, 927
HhaI GCGC 3 cut(s) 182, 191, 487
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 3 cut(s) 180, 189, 485
HinP1I GCGC 3 cut(s) 180, 189, 485
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 9 cut(s) 79, 150, 253, 260, 370, 475, 566, 1023, 1028
HphI GGTGA 5 cut(s) 125, 610, 670, 772, 784
Hpy166II GTNNAC 5 cut(s) 241, 295, 430, 547, 586
Hpy188I TCNGA 8 cut(s) 157, 265, 398, 571, 638, 697, 947, 1022
Hpy188III TCNNGA 8 cut(s) 76, 91, 257, 382, 490, 726, 808, 1170
Hpy8I GTNNAC 5 cut(s) 241, 295, 430, 547, 586
Hpy99I CGWCG 7 cut(s) 110, 235, 472, 475, 590, 686, 1129
HpyAV CCTTC 3 cut(s) 76, 130, 831
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 891
HpyCH4V TGCA 4 cut(s) 72, 295, 967, 1136
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 186, 188, 933
HpySE526I ACGT 1 cut(s) 891
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 3 cut(s) 180, 189, 485
KasI GGCGCC 1 cut(s) 179
KroI GCCGGC 1 cut(s) 884
KroNI GCCGGC 1 cut(s) 886
Kzo9I GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
LmnI GCTCC 5 cut(s) 9, 137, 638, 996, 1063
Lsp1109I GCAGC 4 cut(s) 274, 362, 941, 963
LweI GCATC 3 cut(s) 81, 106, 1145
MabI ACCWGGT 1 cut(s) 768
MaeII ACGT 1 cut(s) 891
MalI GATC 7 cut(s) 104, 400, 806, 1074, 1088, 1130, 1148
MbiI CCGCTC 2 cut(s) 499, 999
MboI GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
MboII GAAGA 3 cut(s) 49, 427, 871
MhlI GDGCHC 5 cut(s) 134, 148, 297, 643, 1046
MluCI AATT 4 cut(s) 418, 514, 790, 821
Mly113I GGCGCC 1 cut(s) 180
MlyI GAGTC 5 cut(s) 73, 247, 254, 379, 560
MmeI TCCRAC 1 cut(s) 720
MroNI GCCGGC 1 cut(s) 884
MseI TTAA 2 cut(s) 417, 456
MslI CAYNNNNRTG 2 cut(s) 248, 752
MspA1I CMGCKG 2 cut(s) 954, 1048
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 3 cut(s) 142, 521, 770
MvnI CGCG 3 cut(s) 368, 509, 628
MwoI GCNNNNNNNGC 4 cut(s) 143, 186, 188, 933
NaeI GCCGGC 1 cut(s) 886
NarI GGCGCC 1 cut(s) 180
NdeII GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
NgoMIV GCCGGC 1 cut(s) 884
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 8 cut(s) 133, 146, 181, 380, 640, 917, 975, 1065
NmeAIII GCCGAG 2 cut(s) 379, 909
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 752
PaeR7I CTCGAG 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 888
PctI GAATGC 1 cut(s) 191
PdiI GCCGGC 1 cut(s) 886
PfeI GAWTC 4 cut(s) 150, 475, 1023, 1028
PflFI GACNNNGTC 3 cut(s) 449, 551, 941
PfoI TCCNGGA 1 cut(s) 438
PinAI ACCGGT 2 cut(s) 749, 909
PkrI GCNGC 9 cut(s) 25, 139, 289, 352, 864, 935, 953, 956, 1001
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 5 cut(s) 73, 247, 254, 378, 560
PluTI GGCGCC 1 cut(s) 183
PpsI GAGTC 5 cut(s) 73, 247, 254, 378, 560
PpuMI RGGWCCY 1 cut(s) 379
PshBI ATTAAT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 3 cut(s) 140, 519, 768
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 3 cut(s) 140, 519, 768
PspN4I GGNNCC 8 cut(s) 133, 146, 181, 380, 640, 917, 975, 1065
PspOMI GGGCCC 1 cut(s) 144
PspPI GGNCC 9 cut(s) 144, 145, 379, 535, 547, 693, 766, 974, 1051
PspPPI RGGWCCY 1 cut(s) 379
PsyI GACNNNGTC 3 cut(s) 449, 551, 941
PvuI CGATCG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 954
RsaI GTAC 4 cut(s) 20, 269, 650, 674
RsaNI GTAC 4 cut(s) 19, 268, 649, 673
RseI CAYNNNNRTG 2 cut(s) 248, 752
SalI GTCGAC 1 cut(s) 584
SaqAI TTAA 2 cut(s) 417, 456
SatI GCNGC 9 cut(s) 24, 138, 288, 351, 863, 934, 952, 955, 1000
Sau3AI GATC 7 cut(s) 102, 398, 804, 1072, 1086, 1128, 1146
Sau96I GGNCC 9 cut(s) 144, 145, 379, 535, 547, 693, 766, 974, 1051
ScaI AGTACT 2 cut(s) 650, 674
SchI GAGTC 5 cut(s) 73, 247, 254, 379, 560
SduI GDGCHC 5 cut(s) 134, 148, 297, 643, 1046
SexAI ACCWGGT 1 cut(s) 768
SfaNI GCATC 3 cut(s) 81, 106, 1145
SfoI GGCGCC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 488
SfuI TTCGAA 1 cut(s) 123
SgrAI CRCCGGYG 2 cut(s) 749, 909
SinI GGWCC 6 cut(s) 379, 547, 693, 766, 974, 1051
SlaI CTCGAG 1 cut(s) 488
SmaI CCCGGG 3 cut(s) 377, 713, 972
SmiMI CAYNNNNRTG 2 cut(s) 248, 752
SmlI CTYRAG 2 cut(s) 488, 724
SmoI CTYRAG 2 cut(s) 488, 724
Sse9I AATT 4 cut(s) 418, 514, 790, 821
SspDI GGCGCC 1 cut(s) 179
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 894
TasI AATT 4 cut(s) 418, 514, 790, 821
TatI WGTACW 2 cut(s) 648, 672
TauI GCSGC 5 cut(s) 26, 140, 865, 936, 1002
TfiI GAWTC 4 cut(s) 150, 475, 1023, 1028
Tru1I TTAA 2 cut(s) 417, 456
Tru9I TTAA 2 cut(s) 417, 456
TseI GCWGC 4 cut(s) 287, 350, 951, 954
TspDTI ATGAA 1 cut(s) 334
TspGWI ACGGA 1 cut(s) 289
TspMI CCCGGG 3 cut(s) 375, 711, 970
Tth111I GACNNNGTC 3 cut(s) 449, 551, 941
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 6 cut(s) 379, 547, 693, 766, 974, 1051
VspI ATTAAT 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 488
XmaI CCCGGG 3 cut(s) 375, 711, 970
XmiI GTMKAC 2 cut(s) 429, 585
ZrmI AGTACT 2 cut(s) 650, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.