RLG00000005793

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015022
Physical Location & Seq
Forward (+)
1805335 .. 1807209
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005793

Sequence Viewer

Length: 1179 bp
ATGCTCTCATTCCGGCTATACGCCGCGGTTTCGTTCCTCTTCAGTGTCTCCCTCCTCTTCCCTCCCTTTTGCATTGGGATTCGCTCCTTCCCGACCCGCGCCATCGACGCCTCCGGAGACGGCTCTTCCGACGACTCTTCCGCGGCGGCGGCAGCCTGGTCGCGATTCTCCGAGGCGCCGGATTATCGTAACGGAGCGGAATGCGCCACGTCGTTTAACCGCGAGATGGTGTCGTCGTGCGACGCGTCGTTGGTCCACATCGCGATGACTCTTGACTCGGAGTATCTCCGGGGTTCCGTCGCCGCCGTCCACTCGGTTCTGAAGCACGCTTCTTGCCCCGAAAACGTGTTCTTTCACTTCATCGCGGCCGAGTTCGACCCGGCCAGCCCTCGCGTCCTGACCCAACTCGTCCGATCCACTTTCCCCTCCCTCAATTTCAAGGTCTATATTTTCCGGGAAGACACCGTGATCAACCTAATCTCCACTTCAATCCGGGTCGCCCTGGAAAACCCGCTTAACTACGCCCGGAACTACTTGGGCGACATATTGGGCCGGTGCGTGGAGCGGGTCATCTACTTGGACTCCGACGTCCTCGTAGTCGACGACATTCACAAGCTCTGGAATATCTCCCTAACCGGGTCGCGGGTCATCGGAGCCCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGGGTTCTGGTCCGACCCGGTTCTCTCCCGGGTCTTCGCGACCCGGAACCCCTGCTACTTCAACACCGGCGTCATGGTCATGGACCTAGTCCGATGGCGGGAAGGAAACTTCCGGAAGAAGATCGAGAACTGGATGGAGTTGCAGAGGAAGCGAAGGATTTACGATCTGGGTTCTCTCCCGCCGTTTTTGCTTGTCTTCGCCGGAAATGTGGAGGCCATAGATCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAATGTCAGGGGCAGCTGCCGGTCTCTGCATCCTGGTCCGGTTTCTTTACTCCATTGGAGCGGAAAAGGCAAGCCGTGGGTGAGACTGGAGTCGAAGAAGGCTTGCCCTCTGGACCATGTTTGGGAGCCTTATGATCTCTACAAGCACCGCAACGTTGCAAAGTATCAGTCTTTTTCATCAATTTCTGCTTCTACATTGATTGGGTTTTCGAGCTATTTGTCTTGA

Protein Analysis

393

Amino Acids

44.17

Weight (kDa)

8.31

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 86 - 346 7.6e-55 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70090 AT1G70090
fragaria_vesca FvH4_4g35260
prunus_persica Prupe.1G262000_v2.0.a1
pyrus_communis pycom13g07340 pycom16g07300
rosa_chinensis RchiOBHm_Chr4g0444871
rosa_laevigata RLG00000005793
rosa_multiflora Rmu_sc0006845.1_g000006
rosa_roxburghii Rroxscaffold_5G00385360
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana Rw4G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AatII GACGTC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 175
AccBSI CCGCTC 3 cut(s) 197, 565, 1014
AccI GTMKAC 1 cut(s) 600
AccIII TCCGGA 2 cut(s) 113, 810
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 2 cut(s) 366, 381
AcuI CTGAAG 2 cut(s) 25, 341
AcyI GRCGYC 4 cut(s) 108, 176, 588, 768
AfaI GTAC 2 cut(s) 665, 689
AfiI CCNNNNNNNGG 6 cut(s) 226, 559, 636, 642, 796, 1075
AflIII ACRYGT 2 cut(s) 243, 345
AgeI ACCGGT 1 cut(s) 924
AgsI TTSAA 3 cut(s) 439, 489, 760
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 3 cut(s) 155, 501, 985
AluBI AGCT 3 cut(s) 616, 969, 1167
AluI AGCT 3 cut(s) 616, 969, 1167
Alw26I GTCTC 4 cut(s) 52, 111, 981, 1030
AlwI GGATC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 726
Aor13HI TCCGGA 2 cut(s) 113, 810
AoxI GGCC 5 cut(s) 366, 381, 550, 912, 940
ApeKI GCWGC 3 cut(s) 152, 966, 969
ArsI GACNNNNNNTTYG 2 cut(s) 1106, 1138
AsiGI ACCGGT 1 cut(s) 924
AspLEI GCGC 3 cut(s) 101, 178, 206
AspS9I GGNCC 6 cut(s) 253, 550, 708, 781, 989, 1066
AsuHPI GGTGA 4 cut(s) 673, 685, 914, 1045
AvaI CYCGRG 1 cut(s) 726
AvaII GGWCC 5 cut(s) 253, 708, 781, 989, 1066
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 658
BbsI GAAGAC 3 cut(s) 465, 724, 886
BbvI GCAGC 3 cut(s) 164, 956, 978
BccI CCATC 4 cut(s) 110, 220, 786, 826
BceAI ACGGC 5 cut(s) 136, 290, 865, 955, 1012
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 3 cut(s) 157, 503, 987
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 4 cut(s) 52, 111, 981, 1030
BfaI CTAG 1 cut(s) 785
BfoI RGCGCY 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 948
BmcAI AGTACT 2 cut(s) 665, 689
Bme18I GGWCC 5 cut(s) 253, 708, 781, 989, 1066
BmeT110I CYCGRG 1 cut(s) 726
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 6 cut(s) 253, 550, 708, 781, 989, 1066
BmiI GGNNCC 6 cut(s) 177, 295, 655, 746, 932, 1080
BmsI GCATC 1 cut(s) 991
BoxI GACNNNNGTC 1 cut(s) 1042
BpiI GAAGAC 3 cut(s) 465, 724, 886
BpmI CTGGAG 1 cut(s) 1061
BsaHI GRCGYC 4 cut(s) 108, 176, 588, 768
BsaI GGTCTC 1 cut(s) 981
BsaJI CCNNGG 9 cut(s) 24, 141, 171, 289, 501, 657, 726, 943, 1028
BsaWI WCCGGW 4 cut(s) 113, 810, 924, 991
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 566, 596
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 559, 636, 642, 796, 1075
Bse118I RCCGGY 4 cut(s) 552, 764, 924, 972
Bse1I ACTGG 2 cut(s) 833, 1044
BseAI TCCGGA 2 cut(s) 113, 810
BseBI CCWGG 3 cut(s) 157, 503, 987
BseDI CCNNGG 9 cut(s) 24, 141, 171, 289, 501, 657, 726, 943, 1028
BseGI GGATG 2 cut(s) 837, 982
BseLI CCNNNNNNNGG 6 cut(s) 226, 559, 636, 642, 796, 1075
BseNI ACTGG 2 cut(s) 833, 1044
BseRI GAGGAG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 3 cut(s) 164, 956, 978
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 5 cut(s) 368, 383, 552, 914, 942
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 726
BslI CCNNNNNNNGG 6 cut(s) 226, 559, 636, 642, 796, 1075
BsmAI GTCTC 4 cut(s) 52, 111, 981, 1030
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 5 cut(s) 368, 383, 552, 914, 942
Bso31I GGTCTC 1 cut(s) 981
BsoBI CYCGRG 1 cut(s) 726
Bsp1286I GDGCHC 1 cut(s) 658
Bsp13I TCCGGA 2 cut(s) 113, 810
Bsp143I GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
Bsp68I TCGCGA 3 cut(s) 163, 263, 737
BspANI GGCC 5 cut(s) 368, 383, 552, 914, 942
BspEI TCCGGA 2 cut(s) 113, 810
BspLI GGNNCC 6 cut(s) 177, 295, 655, 746, 932, 1080
BspPI GGATC 1 cut(s) 408
BspQI GCTCTTC 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 981
BsrBI CCGCTC 3 cut(s) 197, 565, 1014
BsrFI RCCGGY 4 cut(s) 552, 764, 924, 972
BsrI ACTGG 2 cut(s) 833, 1044
BssAI RCCGGY 4 cut(s) 552, 764, 924, 972
BssECI CCNNGG 9 cut(s) 24, 141, 171, 289, 501, 657, 726, 943, 1028
BssMI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
BssNI GRCGYC 4 cut(s) 108, 176, 588, 768
Bst2UI CCWGG 3 cut(s) 157, 503, 987
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 4 cut(s) 44, 62, 130, 142
BstACI GRCGYC 4 cut(s) 108, 176, 588, 768
BstC8I GCNNGC 4 cut(s) 327, 385, 1025, 1057
BstDSI CCRYGG 3 cut(s) 24, 141, 1028
BstF5I GGATG 2 cut(s) 837, 982
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 3 cut(s) 101, 178, 206
BstKTI GATC 6 cut(s) 416, 471, 822, 865, 922, 1090
BstMAI GTCTC 4 cut(s) 52, 111, 981, 1030
BstMBI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 8 cut(s) 107, 149, 152, 203, 847, 886, 948, 1020
BstNI CCWGG 3 cut(s) 157, 503, 987
BstPAI GACNNNNGTC 1 cut(s) 1042
BstV1I GCAGC 3 cut(s) 164, 956, 978
BstV2I GAAGAC 3 cut(s) 465, 724, 886
BstZI CGGCCG 1 cut(s) 366
BsuRI GGCC 5 cut(s) 368, 383, 552, 914, 942
BtgI CCRYGG 3 cut(s) 24, 141, 1028
BtgZI GCGATG 3 cut(s) 244, 278, 346
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 837, 982
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 3 cut(s) 163, 263, 737
Cac8I GCNNGC 4 cut(s) 327, 385, 1025, 1057
CfoI GCGC 3 cut(s) 101, 178, 206
Cfr10I RCCGGY 4 cut(s) 552, 764, 924, 972
Cfr13I GGNCC 6 cut(s) 253, 550, 708, 781, 989, 1066
Cfr42I CCGCGG 2 cut(s) 27, 144
Cfr9I CCCGGG 1 cut(s) 726
CseI GACGC 5 cut(s) 116, 234, 251, 382, 757
Csp6I GTAC 2 cut(s) 664, 688
CspAI ACCGGT 1 cut(s) 924
CviAII CATG 3 cut(s) 772, 778, 1070
CviQI GTAC 2 cut(s) 664, 688
DinI GGCGCC 1 cut(s) 177
DpnI GATC 6 cut(s) 415, 470, 821, 864, 921, 1089
DpnII GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
EaeI YGGCCR 2 cut(s) 366, 381
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 4 cut(s) 44, 62, 130, 142
EarI CTCTTC 4 cut(s) 44, 62, 130, 142
EclXI CGGCCG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 981
Eco47I GGWCC 5 cut(s) 253, 708, 781, 989, 1066
Eco52I CGGCCG 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 25, 341
Eco88I CYCGRG 1 cut(s) 726
EcoRII CCWGG 3 cut(s) 155, 501, 985
EcoT38I GRGCYC 1 cut(s) 658
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 775, 781, 1073
FaiI YATR 8 cut(s) 19, 447, 545, 773, 779, 917, 1071, 1086
FatI CATG 3 cut(s) 771, 777, 1069
FauI CCCGC 6 cut(s) 104, 519, 558, 636, 789, 885
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 600
FokI GGATG 2 cut(s) 844, 969
FriOI GRGCYC 1 cut(s) 658
FspBI CTAG 1 cut(s) 785
GlaI GCGC 3 cut(s) 100, 177, 205
GsuI CTGGAG 1 cut(s) 1061
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 5 cut(s) 368, 383, 552, 914, 942
HgaI GACGC 5 cut(s) 116, 234, 251, 382, 757
HhaI GCGC 3 cut(s) 101, 178, 206
Hin1I GRCGYC 4 cut(s) 108, 176, 588, 768
Hin1II CATG 3 cut(s) 775, 781, 1073
Hin6I GCGC 3 cut(s) 99, 176, 204
HinP1I GCGC 3 cut(s) 99, 176, 204
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 7 cut(s) 79, 134, 165, 268, 275, 581, 1043
HphI GGTGA 4 cut(s) 673, 685, 914, 1045
Hpy166II GTNNAC 3 cut(s) 256, 310, 601
Hpy188I TCNGA 9 cut(s) 130, 172, 280, 321, 413, 586, 653, 712, 791
Hpy8I GTNNAC 3 cut(s) 256, 310, 601
HpyAV CCTTC 4 cut(s) 97, 794, 846, 1045
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 4 cut(s) 209, 345, 588, 1107
HpyCH4V TGCA 4 cut(s) 72, 841, 982, 1112
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 149, 152, 203, 847, 886, 948, 1020
HpySE526I ACGT 4 cut(s) 209, 345, 588, 1107
Hsp92I GRCGYC 4 cut(s) 108, 176, 588, 768
Hsp92II CATG 3 cut(s) 775, 781, 1073
HspAI GCGC 3 cut(s) 99, 176, 204
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 2 cut(s) 113, 810
Ksp22I TGATCA 1 cut(s) 468
KspI CCGCGG 2 cut(s) 27, 144
Kzo9I GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
LguI GCTCTTC 1 cut(s) 130
LmnI GCTCC 6 cut(s) 89, 194, 562, 653, 1011, 1078
Lsp1109I GCAGC 3 cut(s) 164, 956, 978
LweI GCATC 1 cut(s) 991
MaeI CTAG 1 cut(s) 785
MaeII ACGT 4 cut(s) 209, 345, 588, 1107
MaeIII GTNAC 1 cut(s) 188
MalI GATC 6 cut(s) 415, 470, 821, 864, 921, 1089
MbiI CCGCTC 3 cut(s) 197, 565, 1014
MboI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
MhlI GDGCHC 1 cut(s) 658
MluCI AATT 2 cut(s) 433, 1134
MluI ACGCGT 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 5 cut(s) 128, 262, 269, 575, 1052
MmeI TCCRAC 3 cut(s) 153, 609, 735
MroI TCCGGA 2 cut(s) 113, 810
MseI TTAA 2 cut(s) 216, 516
MslI CAYNNNNRTG 2 cut(s) 263, 776
MspA1I CMGCKG 3 cut(s) 26, 143, 969
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 3 cut(s) 157, 503, 987
MwoI GCNNNNNNNGC 8 cut(s) 107, 149, 152, 203, 847, 886, 948, 1020
NarI GGCGCC 1 cut(s) 176
NdeII GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
NlaIII CATG 3 cut(s) 775, 781, 1073
NlaIV GGNNCC 6 cut(s) 177, 295, 655, 746, 932, 1080
NmeAIII GCCGAG 2 cut(s) 394, 924
NruI TCGCGA 3 cut(s) 163, 263, 737
PciSI GCTCTTC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 242, 600
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 79, 165
PflFI GACNNNGTC 2 cut(s) 785, 956
PfoI TCCNGGA 1 cut(s) 453
PinAI ACCGGT 1 cut(s) 924
PleI GAGTC 5 cut(s) 128, 262, 269, 575, 1051
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 5 cut(s) 128, 262, 269, 575, 1051
PshAI GACNNNNGTC 1 cut(s) 1042
Psp1406I AACGTT 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 155, 501, 985
PspGI CCWGG 3 cut(s) 155, 501, 985
PspN4I GGNNCC 6 cut(s) 177, 295, 655, 746, 932, 1080
PspPI GGNCC 6 cut(s) 253, 550, 708, 781, 989, 1066
PsrI GAACNNNNNNTAC 2 cut(s) 737, 769
PsyI GACNNNGTC 2 cut(s) 785, 956
PvuII CAGCTG 1 cut(s) 969
RruI TCGCGA 3 cut(s) 163, 263, 737
RsaI GTAC 2 cut(s) 665, 689
RsaNI GTAC 2 cut(s) 664, 688
RseI CAYNNNNRTG 2 cut(s) 263, 776
SacII CCGCGG 2 cut(s) 27, 144
SalI GTCGAC 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 216, 516
Sau3AI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
Sau96I GGNCC 6 cut(s) 253, 550, 708, 781, 989, 1066
ScaI AGTACT 2 cut(s) 665, 689
SchI GAGTC 5 cut(s) 128, 262, 269, 575, 1052
SduI GDGCHC 1 cut(s) 658
SfaNI GCATC 1 cut(s) 991
SfoI GGCGCC 1 cut(s) 177
Sfr303I CCGCGG 2 cut(s) 27, 144
SgrAI CRCCGGYG 2 cut(s) 764, 924
SgrBI CCGCGG 2 cut(s) 27, 144
SinI GGWCC 5 cut(s) 253, 708, 781, 989, 1066
SmaI CCCGGG 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 263, 776
Sse9I AATT 2 cut(s) 433, 1134
SspDI GGCGCC 1 cut(s) 175
SspMI CTAG 1 cut(s) 785
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 4 cut(s) 212, 348, 591, 1110
TaqI TCGA 6 cut(s) 105, 375, 600, 822, 1046, 1163
TasI AATT 2 cut(s) 433, 1134
TatI WGTACW 2 cut(s) 663, 687
TauI GCSGC 7 cut(s) 26, 146, 149, 152, 305, 368, 951
TfiI GAWTC 2 cut(s) 79, 165
Tru1I TTAA 2 cut(s) 216, 516
Tru9I TTAA 2 cut(s) 216, 516
TscAI CASTG 1 cut(s) 49
TseI GCWGC 3 cut(s) 152, 966, 969
TspDTI ATGAA 2 cut(s) 349, 1119
TspGWI ACGGA 2 cut(s) 207, 286
TspMI CCCGGG 1 cut(s) 726
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 2 cut(s) 785, 956
VpaK11BI GGWCC 5 cut(s) 253, 708, 781, 989, 1066
XmaI CCCGGG 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 1 cut(s) 785
ZraI GACGTC 1 cut(s) 589
ZrmI AGTACT 2 cut(s) 665, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.