Rw4G035770

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
62593860 .. 62595898
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035770.1

Sequence Viewer

Length: 1182 bp
ATGCTCTCATTCCGGCTATACGCCGCCGTTTCATTCCTCTTCAGTGTCTCCCTCCTCTTCCCTCCCTTTTGCATTGGGATTCGCTCCTTCCCGACCCGCGCCATCGACGCCTCCGGGGACGGCGCTTCCGACGACGCTTCCGCGGCGGCGGCGGCGGCCTGGTCGCGATTCTCCGAGGCGCCGGATTATCGTAACGGAGCGGAATGCGCCACGTCGTTTAACCGCGAGATGGTGTCGTCGTGCGACGCGTCGTTGGTCCACATCGCGATGACTCTTGACTCGGAGTATCTCCGGGGCTCCGTCGCCGCCGTCCACTCGGTTCTGAAGCACGCTTCTTGCCCCGAAAACGTGTTCTTTCACTTCATCGCGGCCGAGTTCGACCCGGCCAGCCCCCGGGTCCTGACCCAACTCGTCCGATCCACTTTCCCCTCCCTCAATTTCAAGGTCTATATTTTCCGGGAAGACACCGTCATCAACCTAATCTCCACCTCAATCCGGGTCGCCCTGGAAAACCCGCTTAACTACGCCCGGAACTACTTGGGCGACATATTGGGCCGGTGCGTGGAGCGGGTCATCTACTTGGACTCCGACGTCCTCGTAGTCGACGACATTCACAAGCTCTGGAATATCTCCCTAACCGGGTCGCGGGTCATCGGAGCCCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGGGTTCTGGTCCGACCCGGTTCTCTCCCGGGTCTTCGCGACCCGGAACCCCTGCTACTTCAACACCGGCGTCATGGTCATGGACCTAGTCCGATGGCGGGAAGGAAACTTCCGGAAGAAGATCGAGAACTGGATGGAGTTGCAGAGGAAGCGAAGGATTTACGATCTGGGTTCTCTCCCGCCGTTTTTGCTCGTCTTTGCCGGAAATGTGGAGGCCATAGATCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAATGTCAGAGGCAGCTGCCGGTCTCTGCATCCTGGGCCGGTTTCTTTGCTCCATTGGAGCGGAAAAGGCAAGCCGTGGGTGAGACTGGAGTCGAAGAAGGCTTGCCCTCTGGACCATGTTTGGGAGCCTTATGATCTCTACAAGCACCACAACGTTGCAAAGTATCAGTCTTTTTCATCAATTTCTGCTTCTACATTGATTGGGTTTTCGAGCTATTTGTCTTGA

Protein Analysis

393

Amino Acids

44.19

Weight (kDa)

8.04

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 87 - 347 7.7e-55 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70090 AT1G70090
fragaria_vesca FvH4_4g35260
prunus_persica Prupe.1G262000_v2.0.a1
pyrus_communis pycom13g07340 pycom16g07300
rosa_chinensis RchiOBHm_Chr4g0444871
rosa_laevigata RLG00000005793
rosa_multiflora Rmu_sc0006845.1_g000006
rosa_roxburghii Rroxscaffold_5G00385360
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana Rw4G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AatII GACGTC 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 178
AccBSI CCGCTC 3 cut(s) 200, 568, 1017
AccI GTMKAC 1 cut(s) 603
AccII CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
AccIII TCCGGA 1 cut(s) 813
AclI AACGTT 1 cut(s) 1110
AclWI GGATC 1 cut(s) 411
AcoI YGGCCR 2 cut(s) 369, 384
AcuI CTGAAG 2 cut(s) 25, 344
AcyI GRCGYC 4 cut(s) 108, 179, 591, 771
AfaI GTAC 2 cut(s) 668, 692
AfiI CCNNNNNNNGG 8 cut(s) 229, 393, 495, 562, 639, 645, 799, 1078
AflIII ACRYGT 2 cut(s) 246, 348
AgeI ACCGGT 1 cut(s) 927
AgsI TTSAA 2 cut(s) 442, 763
AjiI CACGTC 1 cut(s) 213
AjnI CCWGG 3 cut(s) 158, 504, 988
AluBI AGCT 3 cut(s) 619, 972, 1170
AluI AGCT 3 cut(s) 619, 972, 1170
Alw26I GTCTC 3 cut(s) 52, 984, 1033
AlwI GGATC 1 cut(s) 411
Ama87I CYCGRG 2 cut(s) 393, 729
Aor13HI TCCGGA 1 cut(s) 813
AoxI GGCC 7 cut(s) 156, 369, 384, 553, 915, 943, 992
ApeKI GCWGC 2 cut(s) 969, 972
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
AsiGI ACCGGT 1 cut(s) 927
AspLEI GCGC 4 cut(s) 101, 125, 181, 209
AspS9I GGNCC 7 cut(s) 256, 397, 553, 711, 784, 992, 1069
AsuHPI GGTGA 4 cut(s) 676, 688, 917, 1048
AvaI CYCGRG 2 cut(s) 393, 729
AvaII GGWCC 5 cut(s) 256, 397, 711, 784, 1069
BanI GGYRCC 1 cut(s) 178
BanII GRGCYC 2 cut(s) 299, 661
BbsI GAAGAC 2 cut(s) 468, 727
BbvI GCAGC 2 cut(s) 959, 981
BccI CCATC 4 cut(s) 110, 223, 789, 829
BceAI ACGGC 6 cut(s) 11, 136, 293, 868, 958, 1015
BciT130I CCWGG 3 cut(s) 160, 506, 990
BcoDI GTCTC 3 cut(s) 52, 984, 1033
BfaI CTAG 1 cut(s) 788
BfoI RGCGCY 2 cut(s) 126, 182
BglI GCCNNNNNGGC 1 cut(s) 951
BmcAI AGTACT 2 cut(s) 668, 692
Bme18I GGWCC 5 cut(s) 256, 397, 711, 784, 1069
BmeT110I CYCGRG 2 cut(s) 393, 729
BmgBI CACGTC 1 cut(s) 213
BmgT120I GGNCC 7 cut(s) 256, 397, 553, 711, 784, 992, 1069
BmiI GGNNCC 7 cut(s) 180, 298, 398, 658, 749, 935, 1083
BmsI GCATC 1 cut(s) 994
BoxI GACNNNNGTC 1 cut(s) 1045
BpiI GAAGAC 2 cut(s) 468, 727
BpmI CTGGAG 1 cut(s) 1064
BsaHI GRCGYC 4 cut(s) 108, 179, 591, 771
BsaI GGTCTC 1 cut(s) 984
BsaWI WCCGGW 2 cut(s) 813, 927
BsaXI ACNNNNNCTCC 4 cut(s) 467, 497, 569, 599
Bsc4I CCNNNNNNNGG 8 cut(s) 229, 393, 495, 562, 639, 645, 799, 1078
Bse118I RCCGGY 5 cut(s) 555, 767, 927, 975, 994
Bse1I ACTGG 2 cut(s) 836, 1047
BseAI TCCGGA 1 cut(s) 813
BseBI CCWGG 3 cut(s) 160, 506, 990
BseGI GGATG 2 cut(s) 840, 985
BseLI CCNNNNNNNGG 8 cut(s) 229, 393, 495, 562, 639, 645, 799, 1078
BseNI ACTGG 2 cut(s) 836, 1047
BseRI GAGGAG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 2 cut(s) 959, 981
Bsh1236I CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 7 cut(s) 158, 371, 386, 555, 917, 945, 994
BshNI GGYRCC 1 cut(s) 178
BshTI ACCGGT 1 cut(s) 927
BsiEI CGRYCG 1 cut(s) 372
BsiHKCI CYCGRG 2 cut(s) 393, 729
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 8 cut(s) 229, 393, 495, 562, 639, 645, 799, 1078
BsmAI GTCTC 3 cut(s) 52, 984, 1033
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 7 cut(s) 158, 371, 386, 555, 917, 945, 994
Bso31I GGTCTC 1 cut(s) 984
BsoBI CYCGRG 2 cut(s) 393, 729
Bsp1286I GDGCHC 2 cut(s) 299, 661
Bsp13I TCCGGA 1 cut(s) 813
Bsp143I GATC 5 cut(s) 416, 822, 865, 922, 1090
Bsp68I TCGCGA 3 cut(s) 166, 266, 740
BspANI GGCC 7 cut(s) 158, 371, 386, 555, 917, 945, 994
BspEI TCCGGA 1 cut(s) 813
BspFNI CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
BspLI GGNNCC 7 cut(s) 180, 298, 398, 658, 749, 935, 1083
BspPI GGATC 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 178
BspTNI GGTCTC 1 cut(s) 984
BsrBI CCGCTC 3 cut(s) 200, 568, 1017
BsrFI RCCGGY 5 cut(s) 555, 767, 927, 975, 994
BsrI ACTGG 2 cut(s) 836, 1047
BssAI RCCGGY 5 cut(s) 555, 767, 927, 975, 994
BssMI GATC 5 cut(s) 416, 822, 865, 922, 1090
BssNI GRCGYC 4 cut(s) 108, 179, 591, 771
Bst2UI CCWGG 3 cut(s) 160, 506, 990
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 44, 62
BstACI GRCGYC 4 cut(s) 108, 179, 591, 771
BstC8I GCNNGC 4 cut(s) 330, 388, 1028, 1060
BstDSI CCRYGG 2 cut(s) 141, 1031
BstF5I GGATG 2 cut(s) 840, 985
BstFNI CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
BstH2I RGCGCY 2 cut(s) 126, 182
BstHHI GCGC 4 cut(s) 101, 125, 181, 209
BstKTI GATC 5 cut(s) 419, 825, 868, 925, 1093
BstMAI GTCTC 3 cut(s) 52, 984, 1033
BstMBI GATC 5 cut(s) 416, 822, 865, 922, 1090
BstMCI CGRYCG 1 cut(s) 372
BstNI CCWGG 3 cut(s) 160, 506, 990
BstPAI GACNNNNGTC 1 cut(s) 1045
BstUI CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
BstV1I GCAGC 2 cut(s) 959, 981
BstV2I GAAGAC 2 cut(s) 468, 727
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 7 cut(s) 158, 371, 386, 555, 917, 945, 994
BtgI CCRYGG 2 cut(s) 141, 1031
BtgZI GCGATG 3 cut(s) 247, 281, 349
BtrI CACGTC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 840, 985
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 3 cut(s) 166, 266, 740
Cac8I GCNNGC 4 cut(s) 330, 388, 1028, 1060
CfoI GCGC 4 cut(s) 101, 125, 181, 209
Cfr10I RCCGGY 5 cut(s) 555, 767, 927, 975, 994
Cfr13I GGNCC 7 cut(s) 256, 397, 553, 711, 784, 992, 1069
Cfr42I CCGCGG 1 cut(s) 144
Cfr9I CCCGGG 2 cut(s) 393, 729
CseI GACGC 5 cut(s) 116, 143, 237, 254, 760
Csp6I GTAC 2 cut(s) 667, 691
CspAI ACCGGT 1 cut(s) 927
CviAII CATG 3 cut(s) 775, 781, 1073
CviQI GTAC 2 cut(s) 667, 691
DinI GGCGCC 1 cut(s) 180
DpnI GATC 5 cut(s) 418, 824, 867, 924, 1092
DpnII GATC 5 cut(s) 416, 822, 865, 922, 1090
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 2 cut(s) 369, 384
EagI CGGCCG 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 44, 62
EarI CTCTTC 2 cut(s) 44, 62
EclXI CGGCCG 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 299, 661
Eco31I GGTCTC 1 cut(s) 984
Eco47I GGWCC 5 cut(s) 256, 397, 711, 784, 1069
Eco52I CGGCCG 1 cut(s) 369
Eco57I CTGAAG 2 cut(s) 25, 344
Eco88I CYCGRG 2 cut(s) 393, 729
EcoO109I RGGNCCY 1 cut(s) 397
EcoRII CCWGG 3 cut(s) 158, 504, 988
EcoT38I GRGCYC 2 cut(s) 299, 661
EgeI GGCGCC 1 cut(s) 180
EheI GGCGCC 1 cut(s) 180
FaeI CATG 3 cut(s) 778, 784, 1076
FaiI YATR 8 cut(s) 19, 450, 548, 776, 782, 920, 1074, 1089
FaqI GGGAC 1 cut(s) 131
FatI CATG 3 cut(s) 774, 780, 1072
FauI CCCGC 6 cut(s) 104, 522, 561, 639, 792, 888
FblI GTMKAC 1 cut(s) 603
FokI GGATG 2 cut(s) 847, 972
FriOI GRGCYC 2 cut(s) 299, 661
FspBI CTAG 1 cut(s) 788
GlaI GCGC 4 cut(s) 100, 124, 180, 208
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 2 cut(s) 126, 182
HaeIII GGCC 7 cut(s) 158, 371, 386, 555, 917, 945, 994
HgaI GACGC 5 cut(s) 116, 143, 237, 254, 760
HhaI GCGC 4 cut(s) 101, 125, 181, 209
Hin1I GRCGYC 4 cut(s) 108, 179, 591, 771
Hin1II CATG 3 cut(s) 778, 784, 1076
Hin6I GCGC 4 cut(s) 99, 123, 179, 207
HinP1I GCGC 4 cut(s) 99, 123, 179, 207
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 6 cut(s) 79, 168, 271, 278, 584, 1046
HphI GGTGA 4 cut(s) 676, 688, 917, 1048
Hpy166II GTNNAC 3 cut(s) 259, 313, 604
Hpy8I GTNNAC 3 cut(s) 259, 313, 604
HpyAV CCTTC 4 cut(s) 97, 797, 849, 1048
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 4 cut(s) 212, 348, 591, 1110
HpyCH4V TGCA 4 cut(s) 72, 844, 985, 1115
HpySE526I ACGT 4 cut(s) 212, 348, 591, 1110
Hsp92I GRCGYC 4 cut(s) 108, 179, 591, 771
Hsp92II CATG 3 cut(s) 778, 784, 1076
HspAI GCGC 4 cut(s) 99, 123, 179, 207
KasI GGCGCC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 813
KspI CCGCGG 1 cut(s) 144
Kzo9I GATC 5 cut(s) 416, 822, 865, 922, 1090
LmnI GCTCC 8 cut(s) 89, 197, 302, 565, 656, 1011, 1014, 1081
Lsp1109I GCAGC 2 cut(s) 959, 981
LweI GCATC 1 cut(s) 994
MaeI CTAG 1 cut(s) 788
MaeII ACGT 4 cut(s) 212, 348, 591, 1110
MaeIII GTNAC 1 cut(s) 191
MalI GATC 5 cut(s) 418, 824, 867, 924, 1092
MbiI CCGCTC 3 cut(s) 200, 568, 1017
MboI GATC 5 cut(s) 416, 822, 865, 922, 1090
MboII GAAGA 7 cut(s) 31, 49, 473, 727, 829, 832, 1063
MhlI GDGCHC 2 cut(s) 299, 661
MluCI AATT 2 cut(s) 436, 1137
MluI ACGCGT 1 cut(s) 246
Mly113I GGCGCC 1 cut(s) 179
MlyI GAGTC 4 cut(s) 265, 272, 578, 1055
MmeI TCCRAC 3 cut(s) 153, 612, 738
MroI TCCGGA 1 cut(s) 813
MseI TTAA 2 cut(s) 219, 519
MslI CAYNNNNRTG 2 cut(s) 266, 779
MspA1I CMGCKG 2 cut(s) 143, 972
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 3 cut(s) 160, 506, 990
MvnI CGCG 9 cut(s) 99, 143, 166, 225, 248, 266, 368, 646, 740
NarI GGCGCC 1 cut(s) 179
NdeII GATC 5 cut(s) 416, 822, 865, 922, 1090
NlaIII CATG 3 cut(s) 778, 784, 1076
NlaIV GGNNCC 7 cut(s) 180, 298, 398, 658, 749, 935, 1083
NmeAIII GCCGAG 2 cut(s) 397, 927
NruI TCGCGA 3 cut(s) 166, 266, 740
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 245, 603
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 79, 168
PflFI GACNNNGTC 3 cut(s) 467, 788, 959
PfoI TCCNGGA 1 cut(s) 456
PinAI ACCGGT 1 cut(s) 927
PleI GAGTC 4 cut(s) 265, 272, 578, 1054
PluTI GGCGCC 1 cut(s) 182
PpsI GAGTC 4 cut(s) 265, 272, 578, 1054
PpuMI RGGWCCY 1 cut(s) 397
PshAI GACNNNNGTC 1 cut(s) 1045
Psp1406I AACGTT 1 cut(s) 1110
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 3 cut(s) 158, 504, 988
PspGI CCWGG 3 cut(s) 158, 504, 988
PspN4I GGNNCC 7 cut(s) 180, 298, 398, 658, 749, 935, 1083
PspPI GGNCC 7 cut(s) 256, 397, 553, 711, 784, 992, 1069
PspPPI RGGWCCY 1 cut(s) 397
PsrI GAACNNNNNNTAC 2 cut(s) 740, 772
PsyI GACNNNGTC 3 cut(s) 467, 788, 959
PvuII CAGCTG 1 cut(s) 972
RruI TCGCGA 3 cut(s) 166, 266, 740
RsaI GTAC 2 cut(s) 668, 692
RsaNI GTAC 2 cut(s) 667, 691
RseI CAYNNNNRTG 2 cut(s) 266, 779
SacII CCGCGG 1 cut(s) 144
SalI GTCGAC 1 cut(s) 602
SaqAI TTAA 2 cut(s) 219, 519
Sau3AI GATC 5 cut(s) 416, 822, 865, 922, 1090
Sau96I GGNCC 7 cut(s) 256, 397, 553, 711, 784, 992, 1069
ScaI AGTACT 2 cut(s) 668, 692
SchI GAGTC 4 cut(s) 265, 272, 578, 1055
SduI GDGCHC 2 cut(s) 299, 661
SfaNI GCATC 1 cut(s) 994
SfoI GGCGCC 1 cut(s) 180
Sfr303I CCGCGG 1 cut(s) 144
SgrAI CRCCGGYG 2 cut(s) 767, 927
SgrBI CCGCGG 1 cut(s) 144
SinI GGWCC 5 cut(s) 256, 397, 711, 784, 1069
SmaI CCCGGG 2 cut(s) 395, 731
SmiMI CAYNNNNRTG 2 cut(s) 266, 779
Sse9I AATT 2 cut(s) 436, 1137
SspDI GGCGCC 1 cut(s) 178
SspMI CTAG 1 cut(s) 788
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 4 cut(s) 215, 351, 594, 1113
TaqI TCGA 6 cut(s) 105, 378, 603, 825, 1049, 1166
TasI AATT 2 cut(s) 436, 1137
TatI WGTACW 2 cut(s) 666, 690
TauI GCSGC 9 cut(s) 26, 146, 149, 152, 155, 158, 308, 371, 954
TfiI GAWTC 2 cut(s) 79, 168
Tru1I TTAA 2 cut(s) 219, 519
Tru9I TTAA 2 cut(s) 219, 519
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 969, 972
TspDTI ATGAA 3 cut(s) 21, 352, 1122
TspGWI ACGGA 2 cut(s) 210, 289
TspMI CCCGGG 2 cut(s) 393, 729
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 3 cut(s) 467, 788, 959
VpaK11BI GGWCC 5 cut(s) 256, 397, 711, 784, 1069
XmaI CCCGGG 2 cut(s) 393, 729
XmiI GTMKAC 1 cut(s) 603
XspI CTAG 1 cut(s) 788
ZraI GACGTC 1 cut(s) 592
ZrmI AGTACT 2 cut(s) 668, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.