Rroxscaffold_5G00385360

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
64435717 .. 64436895
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385360.1

Sequence Viewer

Length: 1179 bp
ATGCTCTCATTCCGGCTATACGCCGCCGTTTCGTTCCTCTTCAGTGTCTCCCTCCTCTTCCCTCCCTTTTGCATTGGGATTCGCTCCTTCCCGACCCGCGCCATCGACGCCTCCGGAGACGGCGCTTCCGACGACGCTTCCGCGGCGGCCGCGGCCTGGTCGCGATTCTCCGAGGCGCCGGATTATCGTAACGGAGCGGAATGCGCCACGTCGTTTAACCGCGAGATGGTGTCGTCGTGCGACGCGTCGTTGGTCCACATCGCGATGACTCTGGACTCGGAGTATCTCCGGGGCTCCGTCGCCGCCGTCCACTCGGTTCTGAAGCACGCTTCTTGCCCCGAAAACGTGTTCTTTCACTTCGTCGCGGCGGAGTTCGACCCGGCCAGCCCTCGGGTCCTGACCCAACTTGTCCGATCCACTTTCCCCTCCCTCAATTTCAAGGTCTATATTTTCCGGGAAGACACCGTGATCAACCTAATCTCCACTTCAATCCGGGTCGCCCTGGAAAACCCGCTTAACTACGCCCGGAACTACTTGGGAGACATATTGGGCCGGTGCGTGGAGCGGGTCATCTACTTGGACTCCGACGTCCTCGTAGTCGACGACATTCACAAGCTCTGGAATATCTCCCTAACCGGGTCGCGGGTCATCGGAGCCCCGGAGTACTGCCACGCCAACTTCACCAAGTACTTCACCGACGGGTTCTGGTCCGACCCGGTTCTGTCCCGGGTCTTCGCGACCCGGAACCCCTGCTACTTCAACACCGGCGTCATGGTCATGGACCTAGTCCGATGGCGGGAAGGAAACTTCCGGAAGAAGATCGAGAACTGGATGGAGTTGCAGAGGAAGCGAAGGATTTACGATCTGGGTTCTCTCCCGCCGTTTTTGCTTGTCTTCGCCGGAAATGTGGAGGCCATAGATCACCGGTGGAACCAGCACGGCCTCGGCGGCGACAATGTCAGAGGCAGCTGCCGGTCTCTGCATCCTGGGCCGGTTTCTTTACTCCATTGGAGCGGAAAAGGCAAGCCGTGGGTGAGACTGGAGTCGAAGAAGTCTTGCCCTCTGGACCATGTTTGGGAGCCTTATGATCTCTACAAGCACCGCAACGTTGCCAAGTATCAGTCTTTTTCATCAATTTCTGCTTCTACATTGATTGGGTTTTCGAGCTATTTGTCTTGA

Protein Analysis

392

Amino Acids

44.14

Weight (kDa)

8.31

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 86 - 346 9.3e-55 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70090 AT1G70090
fragaria_vesca FvH4_4g35260
prunus_persica Prupe.1G262000_v2.0.a1
pyrus_communis pycom13g07340 pycom16g07300
rosa_chinensis RchiOBHm_Chr4g0444871
rosa_laevigata RLG00000005793
rosa_multiflora Rmu_sc0006845.1_g000006
rosa_roxburghii Rroxscaffold_5G00385360
rosa_rugosa Rorug04G0355800
rosa_samantha Rh4AG417300 Rh4BG429100 Rh4CG443800 Rh4DG425000
rosa_wichuraiana Rw4G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AatII GACGTC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 175
AccBSI CCGCTC 3 cut(s) 197, 565, 1014
AccI GTMKAC 1 cut(s) 600
AccIII TCCGGA 2 cut(s) 113, 810
AclI AACGTT 1 cut(s) 1107
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 2 cut(s) 147, 381
AcuI CTGAAG 2 cut(s) 25, 341
AcyI GRCGYC 4 cut(s) 108, 176, 588, 768
AfaI GTAC 2 cut(s) 665, 689
AfiI CCNNNNNNNGG 8 cut(s) 156, 226, 390, 559, 636, 642, 796, 1075
AflIII ACRYGT 2 cut(s) 243, 345
AgeI ACCGGT 1 cut(s) 924
AgsI TTSAA 3 cut(s) 439, 489, 760
AjiI CACGTC 1 cut(s) 210
AjnI CCWGG 3 cut(s) 155, 501, 985
AluBI AGCT 3 cut(s) 616, 969, 1167
AluI AGCT 3 cut(s) 616, 969, 1167
Alw26I GTCTC 5 cut(s) 52, 111, 534, 981, 1030
AlwI GGATC 1 cut(s) 408
Ama87I CYCGRG 2 cut(s) 390, 726
Aor13HI TCCGGA 2 cut(s) 113, 810
AoxI GGCC 7 cut(s) 147, 153, 381, 550, 912, 940, 989
ApeKI GCWGC 2 cut(s) 966, 969
AsiGI ACCGGT 1 cut(s) 924
AspLEI GCGC 4 cut(s) 101, 125, 178, 206
AspS9I GGNCC 7 cut(s) 253, 394, 550, 708, 781, 989, 1066
AsuHPI GGTGA 4 cut(s) 673, 685, 914, 1045
AvaI CYCGRG 2 cut(s) 390, 726
AvaII GGWCC 5 cut(s) 253, 394, 708, 781, 1066
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 2 cut(s) 296, 658
BbsI GAAGAC 3 cut(s) 465, 724, 886
BbvI GCAGC 2 cut(s) 956, 978
BccI CCATC 4 cut(s) 110, 220, 786, 826
BceAI ACGGC 6 cut(s) 11, 136, 290, 865, 955, 1012
BciT130I CCWGG 3 cut(s) 157, 503, 987
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 5 cut(s) 52, 111, 534, 981, 1030
BfaI CTAG 1 cut(s) 785
BfoI RGCGCY 2 cut(s) 126, 179
BglI GCCNNNNNGGC 1 cut(s) 948
BmcAI AGTACT 2 cut(s) 665, 689
Bme18I GGWCC 5 cut(s) 253, 394, 708, 781, 1066
BmeT110I CYCGRG 2 cut(s) 390, 726
BmgBI CACGTC 1 cut(s) 210
BmgT120I GGNCC 7 cut(s) 253, 394, 550, 708, 781, 989, 1066
BmiI GGNNCC 7 cut(s) 177, 295, 395, 655, 746, 932, 1080
BmsI GCATC 1 cut(s) 991
BoxI GACNNNNGTC 1 cut(s) 1042
BpiI GAAGAC 3 cut(s) 465, 724, 886
BpmI CTGGAG 1 cut(s) 1061
BsaHI GRCGYC 4 cut(s) 108, 176, 588, 768
BsaI GGTCTC 1 cut(s) 981
BsaWI WCCGGW 3 cut(s) 113, 810, 924
BsaXI ACNNNNNCTCC 4 cut(s) 464, 494, 566, 596
Bsc4I CCNNNNNNNGG 8 cut(s) 156, 226, 390, 559, 636, 642, 796, 1075
Bse118I RCCGGY 5 cut(s) 552, 764, 924, 972, 991
Bse1I ACTGG 2 cut(s) 833, 1044
BseAI TCCGGA 2 cut(s) 113, 810
BseBI CCWGG 3 cut(s) 157, 503, 987
BseGI GGATG 2 cut(s) 837, 982
BseLI CCNNNNNNNGG 8 cut(s) 156, 226, 390, 559, 636, 642, 796, 1075
BseNI ACTGG 2 cut(s) 833, 1044
BseRI GAGGAG 1 cut(s) 44
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 956, 978
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 7 cut(s) 149, 155, 383, 552, 914, 942, 991
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 150
BsiHKCI CYCGRG 2 cut(s) 390, 726
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 8 cut(s) 156, 226, 390, 559, 636, 642, 796, 1075
BsmAI GTCTC 5 cut(s) 52, 111, 534, 981, 1030
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 709
BsmI GAATGC 1 cut(s) 206
BsnI GGCC 7 cut(s) 149, 155, 383, 552, 914, 942, 991
Bso31I GGTCTC 1 cut(s) 981
BsoBI CYCGRG 2 cut(s) 390, 726
Bsp1286I GDGCHC 2 cut(s) 296, 658
Bsp13I TCCGGA 2 cut(s) 113, 810
Bsp143I GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
Bsp68I TCGCGA 3 cut(s) 163, 263, 737
BspANI GGCC 7 cut(s) 149, 155, 383, 552, 914, 942, 991
BspEI TCCGGA 2 cut(s) 113, 810
BspLI GGNNCC 7 cut(s) 177, 295, 395, 655, 746, 932, 1080
BspPI GGATC 1 cut(s) 408
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 981
BsrBI CCGCTC 3 cut(s) 197, 565, 1014
BsrFI RCCGGY 5 cut(s) 552, 764, 924, 972, 991
BsrI ACTGG 2 cut(s) 833, 1044
BssAI RCCGGY 5 cut(s) 552, 764, 924, 972, 991
BssMI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
BssNI GRCGYC 4 cut(s) 108, 176, 588, 768
Bst2UI CCWGG 3 cut(s) 157, 503, 987
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 44, 62
BstACI GRCGYC 4 cut(s) 108, 176, 588, 768
BstC8I GCNNGC 3 cut(s) 327, 385, 1025
BstDSI CCRYGG 3 cut(s) 141, 150, 1028
BstF5I GGATG 2 cut(s) 837, 982
BstH2I RGCGCY 2 cut(s) 126, 179
BstHHI GCGC 4 cut(s) 101, 125, 178, 206
BstKTI GATC 6 cut(s) 416, 471, 822, 865, 922, 1090
BstMAI GTCTC 5 cut(s) 52, 111, 534, 981, 1030
BstMBI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
BstMCI CGRYCG 1 cut(s) 150
BstNI CCWGG 3 cut(s) 157, 503, 987
BstPAI GACNNNNGTC 1 cut(s) 1042
BstV1I GCAGC 2 cut(s) 956, 978
BstV2I GAAGAC 3 cut(s) 465, 724, 886
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 7 cut(s) 149, 155, 383, 552, 914, 942, 991
BtgI CCRYGG 3 cut(s) 141, 150, 1028
BtgZI GCGATG 2 cut(s) 244, 278
BtrI CACGTC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 837, 982
BtsIMutI CAGTG 1 cut(s) 49
BtuMI TCGCGA 3 cut(s) 163, 263, 737
Cac8I GCNNGC 3 cut(s) 327, 385, 1025
CciNI GCGGCCGC 1 cut(s) 147
CfoI GCGC 4 cut(s) 101, 125, 178, 206
Cfr10I RCCGGY 5 cut(s) 552, 764, 924, 972, 991
Cfr13I GGNCC 7 cut(s) 253, 394, 550, 708, 781, 989, 1066
Cfr42I CCGCGG 2 cut(s) 144, 153
Cfr9I CCCGGG 1 cut(s) 726
CseI GACGC 5 cut(s) 116, 143, 234, 251, 757
Csp6I GTAC 2 cut(s) 664, 688
CspAI ACCGGT 1 cut(s) 924
CviAII CATG 3 cut(s) 772, 778, 1070
CviQI GTAC 2 cut(s) 664, 688
DinI GGCGCC 1 cut(s) 177
DpnI GATC 6 cut(s) 415, 470, 821, 864, 921, 1089
DpnII GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
EaeI YGGCCR 2 cut(s) 147, 381
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 44, 62
EarI CTCTTC 2 cut(s) 44, 62
EciI GGCGGA 1 cut(s) 383
EclXI CGGCCG 1 cut(s) 147
Eco24I GRGCYC 2 cut(s) 296, 658
Eco31I GGTCTC 1 cut(s) 981
Eco47I GGWCC 5 cut(s) 253, 394, 708, 781, 1066
Eco52I CGGCCG 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 25, 341
Eco88I CYCGRG 2 cut(s) 390, 726
EcoO109I RGGNCCY 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 155, 501, 985
EcoT38I GRGCYC 2 cut(s) 296, 658
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 775, 781, 1073
FaiI YATR 8 cut(s) 19, 447, 545, 773, 779, 917, 1071, 1086
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 771, 777, 1069
FauI CCCGC 6 cut(s) 104, 519, 558, 636, 789, 885
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 600
FokI GGATG 2 cut(s) 844, 969
FriOI GRGCYC 2 cut(s) 296, 658
FspBI CTAG 1 cut(s) 785
GlaI GCGC 4 cut(s) 100, 124, 177, 205
GsuI CTGGAG 1 cut(s) 1061
HaeII RGCGCY 2 cut(s) 126, 179
HaeIII GGCC 7 cut(s) 149, 155, 383, 552, 914, 942, 991
HgaI GACGC 5 cut(s) 116, 143, 234, 251, 757
HhaI GCGC 4 cut(s) 101, 125, 178, 206
Hin1I GRCGYC 4 cut(s) 108, 176, 588, 768
Hin1II CATG 3 cut(s) 775, 781, 1073
Hin6I GCGC 4 cut(s) 99, 123, 176, 204
HinP1I GCGC 4 cut(s) 99, 123, 176, 204
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 6 cut(s) 79, 165, 268, 275, 581, 1043
HphI GGTGA 4 cut(s) 673, 685, 914, 1045
Hpy166II GTNNAC 3 cut(s) 256, 310, 601
Hpy8I GTNNAC 3 cut(s) 256, 310, 601
HpyAV CCTTC 3 cut(s) 97, 794, 846
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 4 cut(s) 209, 345, 588, 1107
HpyCH4V TGCA 3 cut(s) 72, 841, 982
HpySE526I ACGT 4 cut(s) 209, 345, 588, 1107
Hsp92I GRCGYC 4 cut(s) 108, 176, 588, 768
Hsp92II CATG 3 cut(s) 775, 781, 1073
HspAI GCGC 4 cut(s) 99, 123, 176, 204
KasI GGCGCC 1 cut(s) 175
Kpn2I TCCGGA 2 cut(s) 113, 810
Ksp22I TGATCA 1 cut(s) 468
KspI CCGCGG 2 cut(s) 144, 153
Kzo9I GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
LmnI GCTCC 7 cut(s) 89, 194, 299, 562, 653, 1011, 1078
Lsp1109I GCAGC 2 cut(s) 956, 978
LweI GCATC 1 cut(s) 991
MaeI CTAG 1 cut(s) 785
MaeII ACGT 4 cut(s) 209, 345, 588, 1107
MaeIII GTNAC 1 cut(s) 188
MalI GATC 6 cut(s) 415, 470, 821, 864, 921, 1089
MbiI CCGCTC 3 cut(s) 197, 565, 1014
MboI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
MboII GAAGA 8 cut(s) 31, 49, 470, 724, 826, 829, 886, 1060
MhlI GDGCHC 2 cut(s) 296, 658
MluCI AATT 2 cut(s) 433, 1134
MluI ACGCGT 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 176
MlyI GAGTC 4 cut(s) 262, 269, 575, 1052
MmeI TCCRAC 3 cut(s) 153, 609, 735
MroI TCCGGA 2 cut(s) 113, 810
MseI TTAA 2 cut(s) 216, 516
MslI CAYNNNNRTG 2 cut(s) 263, 776
MspA1I CMGCKG 3 cut(s) 143, 152, 969
Mva1269I GAATGC 1 cut(s) 206
MvaI CCWGG 3 cut(s) 157, 503, 987
NarI GGCGCC 1 cut(s) 176
NdeII GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
NlaIII CATG 3 cut(s) 775, 781, 1073
NlaIV GGNNCC 7 cut(s) 177, 295, 395, 655, 746, 932, 1080
NmeAIII GCCGAG 1 cut(s) 924
NotI GCGGCCGC 1 cut(s) 147
NruI TCGCGA 3 cut(s) 163, 263, 737
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 242, 600
PctI GAATGC 1 cut(s) 206
PfeI GAWTC 2 cut(s) 79, 165
PflFI GACNNNGTC 2 cut(s) 785, 956
PfoI TCCNGGA 1 cut(s) 453
PinAI ACCGGT 1 cut(s) 924
PleI GAGTC 4 cut(s) 262, 269, 575, 1051
PluTI GGCGCC 1 cut(s) 179
PpsI GAGTC 4 cut(s) 262, 269, 575, 1051
PpuMI RGGWCCY 1 cut(s) 394
PshAI GACNNNNGTC 1 cut(s) 1042
Psp1406I AACGTT 1 cut(s) 1107
Psp5II RGGWCCY 1 cut(s) 394
Psp6I CCWGG 3 cut(s) 155, 501, 985
PspGI CCWGG 3 cut(s) 155, 501, 985
PspN4I GGNNCC 7 cut(s) 177, 295, 395, 655, 746, 932, 1080
PspPI GGNCC 7 cut(s) 253, 394, 550, 708, 781, 989, 1066
PspPPI RGGWCCY 1 cut(s) 394
PsrI GAACNNNNNNTAC 2 cut(s) 737, 769
PsyI GACNNNGTC 2 cut(s) 785, 956
PvuII CAGCTG 1 cut(s) 969
RruI TCGCGA 3 cut(s) 163, 263, 737
RsaI GTAC 2 cut(s) 665, 689
RsaNI GTAC 2 cut(s) 664, 688
RseI CAYNNNNRTG 2 cut(s) 263, 776
SacII CCGCGG 2 cut(s) 144, 153
SalI GTCGAC 1 cut(s) 599
SaqAI TTAA 2 cut(s) 216, 516
Sau3AI GATC 6 cut(s) 413, 468, 819, 862, 919, 1087
Sau96I GGNCC 7 cut(s) 253, 394, 550, 708, 781, 989, 1066
ScaI AGTACT 2 cut(s) 665, 689
SchI GAGTC 4 cut(s) 262, 269, 575, 1052
SduI GDGCHC 2 cut(s) 296, 658
SfaNI GCATC 1 cut(s) 991
SfoI GGCGCC 1 cut(s) 177
Sfr303I CCGCGG 2 cut(s) 144, 153
SgrAI CRCCGGYG 2 cut(s) 764, 924
SgrBI CCGCGG 2 cut(s) 144, 153
SinI GGWCC 5 cut(s) 253, 394, 708, 781, 1066
SmaI CCCGGG 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 263, 776
Sse9I AATT 2 cut(s) 433, 1134
SspDI GGCGCC 1 cut(s) 175
SspMI CTAG 1 cut(s) 785
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 4 cut(s) 212, 348, 591, 1110
TaqI TCGA 6 cut(s) 105, 375, 600, 822, 1046, 1163
TasI AATT 2 cut(s) 433, 1134
TatI WGTACW 2 cut(s) 663, 687
TauI GCSGC 8 cut(s) 26, 146, 149, 152, 155, 305, 368, 951
TfiI GAWTC 2 cut(s) 79, 165
Tru1I TTAA 2 cut(s) 216, 516
Tru9I TTAA 2 cut(s) 216, 516
TscAI CASTG 1 cut(s) 49
TseI GCWGC 2 cut(s) 966, 969
TspDTI ATGAA 1 cut(s) 1119
TspGWI ACGGA 2 cut(s) 207, 286
TspMI CCCGGG 1 cut(s) 726
TspRI CASTG 1 cut(s) 49
Tth111I GACNNNGTC 2 cut(s) 785, 956
VpaK11BI GGWCC 5 cut(s) 253, 394, 708, 781, 1066
XmaI CCCGGG 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 600
XspI CTAG 1 cut(s) 785
ZraI GACGTC 1 cut(s) 589
ZrmI AGTACT 2 cut(s) 665, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.