Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0018431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5056873 .. 5057771

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCAACCATGCATTCCTCCACTAGAACAAATTTACAAGTAATAAAATTGGAATATGCATGTGTACCAGTGTTTGTGACTGTGTTTCTCAGAAAGAGAGAGAGGATGAACATGAGCATGAAGATTTTACTTCCCTTTATTGGAATGGTGATGGCGATTATGGCTCAGACTGGGAGTGTGGTAGTAAACAAAGCAGCGATGTCCACAGGGACCAATGCATACATCATCGTCGTCTACGGCAACACCATCGCCGCCCTCATTCTTCTTCCTTCTGCTCTCATCTTCCACAGATCGGAGCGCCCTCCCCTTACATTCTCCATACTTTGCAGAATCTTCTTGCTTGGCCTGTTTTGTTGTTCAGCGCAAATATTTGGAAATATTGGCATAGAATACAGCTCTCCCACGCTTAGCACGGCCATGCTTAACCTCATCCCAGCTTTTACTTTCATACTTGCCATCATTTTTAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

158

Amino Acids

17.43

Weight (kDa)

9.8

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	49 - 155	9.2e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018431)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g34870 FvH4_4g34870 FvH4_4g34870
malus_domestica	MD13G1088800.v1.1
pyrus_communis	pycom13g07660
rosa_laevigata	RLG00000005844 RLG00000005845
rosa_rugosa	Rorug04G0351300
rosa_samantha	Rh4BG423400 Rh4CG437700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	1 cut(s)	252
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	2 cut(s)	66, 470
AfiI	CCNNNNNNNGG	2 cut(s)	140, 292
AluBI	AGCT	2 cut(s)	396, 437
AluI	AGCT	2 cut(s)	396, 437
AoxI	GGCC	2 cut(s)	343, 414
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	300, 364
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	3 cut(s)	145, 254, 464
BceAI	ACGGC	2 cut(s)	253, 429
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	2 cut(s)	195, 252
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	2 cut(s)	196, 253
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
Bpu1102I	GCTNAGC	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 292
Bse1I	ACTGG	2 cut(s)	68, 175
BseGI	GGATG	2 cut(s)	111, 429
BseLI	CCNNNNNNNGG	2 cut(s)	140, 292
BseMII	CTCAG	2 cut(s)	103, 179
BseNI	ACTGG	2 cut(s)	68, 175
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	433
BshFI	GGCC	2 cut(s)	345, 416
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	140, 292
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	345, 416
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	2 cut(s)	345, 416
BspCNI	CTCAG	2 cut(s)	102, 178
BspLI	GGNNCC	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	68, 175
BssMI	GATC	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	82
BstDEI	CTNAG	3 cut(s)	89, 165, 407
BstF5I	GGATG	2 cut(s)	111, 429
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	300, 364
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	345, 416
BtgZI	GCGATG	2 cut(s)	212, 232
BtsCI	GGATG	2 cut(s)	111, 429
BtsIMutI	CAGTG	1 cut(s)	75
CfoI	GCGC	2 cut(s)	300, 364
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	65, 469
CviAII	CATG	5 cut(s)	10, 60, 112, 118, 418
CviJI	RGCY	5 cut(s)	164, 345, 396, 416, 437
CviKI_1	RGCY	5 cut(s)	164, 345, 396, 416, 437
CviQI	GTAC	2 cut(s)	65, 469
DdeI	CTNAG	3 cut(s)	89, 165, 407
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	210
EcoT22I	ATGCAT	3 cut(s)	15, 61, 220
FaeI	CATG	5 cut(s)	13, 63, 115, 121, 421
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	5 cut(s)	9, 59, 111, 117, 417
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	195, 252
FokI	GGATG	2 cut(s)	118, 416
Fsp4HI	GCNGC	2 cut(s)	195, 252
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	2 cut(s)	299, 363
GluI	GCNGC	2 cut(s)	195, 252
GsaI	CCCAGC	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	345, 416
HhaI	GCGC	2 cut(s)	300, 364
Hin1II	CATG	5 cut(s)	13, 63, 115, 121, 421
Hin6I	GCGC	2 cut(s)	298, 362
HinP1I	GCGC	2 cut(s)	298, 362
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	5 cut(s)	6, 65, 187, 204, 235
Hpy188I	TCNGA	3 cut(s)	92, 168, 295
Hpy8I	GTNNAC	5 cut(s)	6, 65, 187, 204, 235
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	13, 59, 218, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	89, 165, 407
Hsp92II	CATG	5 cut(s)	13, 63, 115, 121, 421
HspAI	GCGC	2 cut(s)	298, 362
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	5 cut(s)	81, 156, 192, 359, 447
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	133, 254, 257, 274, 325
MluCI	AATT	2 cut(s)	31, 47
MnlI	CCTC	5 cut(s)	28, 96, 266, 312, 437
Mph1103I	ATGCAT	3 cut(s)	15, 61, 220
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	116, 416
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	5 cut(s)	13, 63, 115, 121, 421
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	3 cut(s)	15, 61, 220
NspI	RCATGY	1 cut(s)	63
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	196, 253
PspFI	CCCAGC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	2 cut(s)	66, 470
RsaNI	GTAC	2 cut(s)	65, 469
RseI	CAYNNNNRTG	2 cut(s)	116, 416
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	195, 252
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	210
SetI	ASST	4 cut(s)	398, 429, 439, 470
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	116, 416
Sse9I	AATT	2 cut(s)	31, 47
SsiI	CCGC	1 cut(s)	252
SspI	AATATT	2 cut(s)	369, 379
SspMI	CTAG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	82
TasI	AATT	2 cut(s)	31, 47
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	122, 134, 436
TspRI	CASTG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	3 cut(s)	15, 61, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.