Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010164

Physical Location & Seq

Genomic Coordinates Forward (+)

6083739 .. 6085380

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGTTGTACTGGACAATCACATAACTGAGCCTGGGTGGTGTTGCAGCAACACTGACGGCAATGGTTTCTTCGGCGACAAGTATTTCAACCCTGACAATTGGATCGTTGGCCTAACTCGAATGGCGGCGTTGTTCCATGGTGTGCGCAATGTGGTGGGCATGAGCTTGAGGAATGAGCTGCGAGGCCCCAAACAGAATGTTAACGATTGGTACACGTACATGCAAAGAGGAGCTGAGGCAGTCCACAAGGCAAACCCAGATGTGCTTGTCATTTTCTCTGGCCTGAAGTTTGACGCAGACTTGTCTTTCCTCGCCAATCGACCAGTGAAGCTCACATTTTCCGGGAAAACGGTATATGAGGTTCACTGGTATGGATTTACAGACGGGCAGGAGTGGAAAAGCGGCAACTCCAATCAAGTGTGCGGCCATGTGTACAATAACATGAAGGGAAGGTCAGGTTTTTTGCTTGACAGAGGATTTCCGTTGTTTGTGAGCGAGTTTGGTGTGGACCAGAGGGGCACCAATGTAATTGACAACAGGTACTTAAACTGCTTCATGGCTGCTGCTGTTGAACTTGATGTGGATTTTGCTCAGTGGAGCCTGGTTGGGAGTTATTATTTAAGGCAAGGGGTGACGGGTATGGAAGAGTATTATGGAATCTTGAACTCGGATTGGAGTGGTATCAGGAATTCAAGCCTAACTCAAAGAATATCTGTCCTCCAAACTTCTATCAAAGGGGCAGGTTTACATACACCCACGTTGCATAAAATCATATTCCATCCAGCCACAGGCCTCTGCCTCCTAAAAGTTGGAACCCGTGGCCCTTTGAAGTTAGGTCCATGCTCTCAGACTCAAGGCTGGACCTATTCATCCACAAAGGTCCTATTGCTGAATGAAATAAAATTCTGCATACAAGCTGATCAACTGAATAAGCCGGCAGTATTGGGAATACCGTGCACCACCCCGAATTCGCAATGGGAGACCATTTCGGATTCCAAGATGCACCTTCAATCTAAGACCACGGATGGTACTGAAGTTTGCCTGGACGTAGACTCCGACAAAACCATTGTCACAAATGCCTGCAAATGCTTAAGCGGAGACAGTTCGTGCGACCCCGCAAGCCAGTGGTTCAAAGTCGTGGACAGCTTAATAAATTCGACGCCATCGAAGGAAGGTTTGGTAAGCGTAGGAAATAAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Cellulase Ricin_B_lectin

Protein Analysis

401

Amino Acids

44.23

Weight (kDa)

6.74

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13130
fragaria_vesca	FvH4_4g25340
malus_domestica	MD13G1104600.v1.1 MD13G1104700.v1.1 MD16G1104600.v1.1
prunus_persica	Prupe.1G241800_v2.0.a1 Prupe.1G241800_v2.0.a1
pyrus_communis	pycom13g09080 pycom13g09090 pycom16g08910 pycom16g08920
rosa_chinensis	RchiOBHm_Chr4g0432641
rosa_laevigata	RLG00000006827
rosa_multiflora	Rmu_sc0004612.1_g000005
rosa_roxburghii	Rroxscaffold_5G00374090
rosa_rugosa	Rorug04G0260800
rosa_samantha	Rh4AG315600 Rh4BG323400 Rh4CG338500 Rh4DG319000
rosa_wichuraiana	Rw4G027450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	731
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	1050
AciI	CCGC	5 cut(s)	125, 402, 423, 1095, 1116
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	4 cut(s)	688, 902, 967, 1153
AcuI	CTGAAG	2 cut(s)	305, 1053
AcyI	GRCGYC	1 cut(s)	1160
AfaI	GTAC	6 cut(s)	9, 212, 218, 434, 542, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	788
AflII	CTTAAG	1 cut(s)	1090
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	7 cut(s)	88, 572, 664, 693, 829, 1010, 1132
AjnI	CCWGG	3 cut(s)	31, 600, 1041
AjuI	GAANNNNNNNTTGG	2 cut(s)	1160, 1192
AluBI	AGCT	6 cut(s)	165, 178, 233, 331, 917, 1146
AluI	AGCT	6 cut(s)	165, 178, 233, 331, 917, 1146
Alw21I	GWGCWC	1 cut(s)	959
Alw26I	GTCTC	2 cut(s)	974, 1092
Alw44I	GTGCAC	1 cut(s)	955
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	6 cut(s)	109, 184, 280, 424, 790, 820
ApaLI	GTGCAC	1 cut(s)	955
ApeKI	GCWGC	4 cut(s)	45, 178, 560, 563
ApoI	RAATTY	4 cut(s)	688, 902, 967, 1153
ArsI	GACNNNNNNTTYG	2 cut(s)	1053, 1085
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	6 cut(s)	185, 508, 821, 836, 861, 880
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	643
AvaII	GGWCC	4 cut(s)	508, 836, 861, 880
BaeGI	GKGCMC	2 cut(s)	521, 959
BaeI	ACNNNNGTAYC	2 cut(s)	1020, 1053
BanI	GGYRCC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	959
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	57, 165, 547, 550
BccI	CCATC	3 cut(s)	786, 1019, 1171
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	3 cut(s)	33, 602, 1043
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	974, 1092
BfrI	CTTAAG	1 cut(s)	1090
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	7 cut(s)	46, 126, 179, 403, 424, 561, 564
BlsI	GCNGC	7 cut(s)	47, 127, 180, 404, 425, 562, 565
Bme1390I	CCNGG	4 cut(s)	33, 343, 602, 1043
Bme18I	GGWCC	4 cut(s)	508, 836, 861, 880
BmgT120I	GGNCC	6 cut(s)	185, 508, 821, 836, 861, 880
BmiI	GGNNCC	4 cut(s)	187, 520, 599, 814
BmrFI	CCNGG	4 cut(s)	33, 343, 602, 1043
BmsI	GCATC	1 cut(s)	990
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	187, 837
BpuMI	CCSGG	1 cut(s)	343
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	1160
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	4 cut(s)	32, 136, 817, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	1037, 1067
Bsc4I	CCNNNNNNNGG	1 cut(s)	788
Bse118I	RCCGGY	1 cut(s)	934
Bse1I	ACTGG	4 cut(s)	15, 323, 371, 1123
Bse3DI	GCAATG	3 cut(s)	67, 154, 980
BseBI	CCWGG	3 cut(s)	33, 602, 1043
BseDI	CCNNGG	4 cut(s)	32, 136, 817, 1020
BseGI	GGATG	3 cut(s)	778, 869, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	788
BseMI	GCAATG	3 cut(s)	67, 154, 980
BseMII	CTCAG	4 cut(s)	18, 225, 605, 860
BseNI	ACTGG	4 cut(s)	15, 323, 371, 1123
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	521, 959
BseXI	GCAGC	4 cut(s)	57, 165, 547, 550
BshFI	GGCC	6 cut(s)	111, 186, 282, 426, 792, 822
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	959
BsiSI	CCGG	2 cut(s)	342, 935
BslI	CCNNNNNNNGG	1 cut(s)	788
BsmAI	GTCTC	2 cut(s)	974, 1092
BsnI	GGCC	6 cut(s)	111, 186, 282, 426, 792, 822
Bso31I	GGTCTC	1 cut(s)	974
Bsp1286I	GDGCHC	2 cut(s)	521, 959
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	102, 919
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	5 cut(s)	125, 402, 423, 1095, 1116
BspANI	GGCC	6 cut(s)	111, 186, 282, 426, 792, 822
BspCNI	CTCAG	4 cut(s)	19, 226, 604, 859
BspLI	GGNNCC	4 cut(s)	187, 520, 599, 814
BspMI	ACCTGC	1 cut(s)	731
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	518
BspTI	CTTAAG	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	3 cut(s)	67, 154, 980
BsrFI	RCCGGY	1 cut(s)	934
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	4 cut(s)	15, 323, 371, 1123
BssAI	RCCGGY	1 cut(s)	934
BssECI	CCNNGG	4 cut(s)	32, 136, 817, 1020
BssMI	GATC	2 cut(s)	102, 919
BssNI	GRCGYC	1 cut(s)	1160
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	3 cut(s)	33, 602, 1043
Bst4CI	ACNGT	3 cut(s)	352, 954, 1103
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	1 cut(s)	1160
BstAFI	CTTAAG	1 cut(s)	1090
BstAUI	TGTACA	1 cut(s)	432
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	936, 1081, 1120
BstDEI	CTNAG	5 cut(s)	27, 234, 591, 846, 1014
BstDSI	CCRYGG	3 cut(s)	136, 817, 1020
BstF5I	GGATG	3 cut(s)	778, 869, 1030
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	105, 922
BstMAI	GTCTC	2 cut(s)	974, 1092
BstMBI	GATC	2 cut(s)	102, 919
BstNI	CCWGG	3 cut(s)	33, 602, 1043
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	31, 341, 600, 1041
BstSLI	GKGCMC	2 cut(s)	521, 959
BstV1I	GCAGC	4 cut(s)	57, 165, 547, 550
BsuRI	GGCC	6 cut(s)	111, 186, 282, 426, 792, 822
BtgI	CCRYGG	3 cut(s)	136, 817, 1020
BtsCI	GGATG	3 cut(s)	778, 869, 1030
BtsIMutI	CAGTG	5 cut(s)	51, 330, 364, 599, 1130
BveI	ACCTGC	1 cut(s)	731
Cac8I	GCNNGC	3 cut(s)	936, 1081, 1120
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	934
Cfr13I	GGNCC	6 cut(s)	185, 508, 821, 836, 861, 880
CseI	GACGC	2 cut(s)	302, 1168
Csp6I	GTAC	6 cut(s)	8, 211, 217, 433, 541, 1029
CviAII	CATG	7 cut(s)	137, 160, 220, 428, 442, 556, 840
CviQI	GTAC	6 cut(s)	8, 211, 217, 433, 541, 1029
DdeI	CTNAG	5 cut(s)	27, 234, 591, 846, 1014
DpnI	GATC	2 cut(s)	104, 921
DpnII	GATC	2 cut(s)	102, 919
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	792
Eco31I	GGTCTC	1 cut(s)	974
Eco47I	GGWCC	4 cut(s)	508, 836, 861, 880
Eco57I	CTGAAG	2 cut(s)	305, 1053
EcoO109I	RGGNCCY	2 cut(s)	185, 880
EcoRI	GAATTC	2 cut(s)	688, 967
EcoRII	CCWGG	3 cut(s)	31, 600, 1041
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	7 cut(s)	140, 163, 223, 431, 445, 559, 843
FatI	CATG	7 cut(s)	136, 159, 219, 427, 441, 555, 839
FauI	CCCGC	1 cut(s)	1123
FbaI	TGATCA	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	7 cut(s)	46, 126, 179, 403, 424, 561, 564
FokI	GGATG	3 cut(s)	765, 856, 1037
Fsp4HI	GCNGC	7 cut(s)	46, 126, 179, 403, 424, 561, 564
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	7 cut(s)	46, 126, 179, 403, 424, 561, 564
HaeIII	GGCC	6 cut(s)	111, 186, 282, 426, 792, 822
HapII	CCGG	2 cut(s)	342, 935
HgaI	GACGC	2 cut(s)	302, 1168
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	1160
Hin1II	CATG	7 cut(s)	140, 163, 223, 431, 445, 559, 843
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	4 cut(s)	657, 850, 992, 1052
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	342, 935
HphI	GGTGA	1 cut(s)	643
Hpy188I	TCNGA	4 cut(s)	670, 849, 991, 1057
Hpy188III	TCNNGA	2 cut(s)	661, 685
Hpy99I	CGWCG	1 cut(s)	1162
HpyAV	CCTTC	5 cut(s)	439, 444, 1016, 1162, 1166
HpyCH4III	ACNGT	3 cut(s)	352, 954, 1103
HpyCH4IV	ACGT	3 cut(s)	215, 758, 1047
HpyCH4V	TGCA	7 cut(s)	45, 223, 763, 909, 957, 1003, 1083
HpyF3I	CTNAG	5 cut(s)	27, 234, 591, 846, 1014
HpySE526I	ACGT	3 cut(s)	215, 758, 1047
Hsp92I	GRCGYC	1 cut(s)	1160
Hsp92II	CATG	7 cut(s)	140, 163, 223, 431, 445, 559, 843
HspAI	GCGC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	934
KroNI	GCCGGC	1 cut(s)	936
Ksp22I	TGATCA	1 cut(s)	919
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	102, 919
LmnI	GCTCC	2 cut(s)	230, 597
Lsp1109I	GCAGC	4 cut(s)	57, 165, 547, 550
LweI	GCATC	1 cut(s)	990
MaeII	ACGT	3 cut(s)	215, 758, 1047
MaeIII	GTNAC	2 cut(s)	631, 1069
MalI	GATC	2 cut(s)	104, 921
MboI	GATC	2 cut(s)	102, 919
MboII	GAAGA	2 cut(s)	61, 656
MfeI	CAATTG	1 cut(s)	97
MhlI	GDGCHC	2 cut(s)	521, 959
MluCI	AATT	7 cut(s)	97, 528, 688, 902, 967, 1153, 1198
MlyI	GAGTC	2 cut(s)	844, 1046
MmeI	TCCRAC	2 cut(s)	790, 1080
MroNI	GCCGGC	1 cut(s)	934
MseI	TTAA	5 cut(s)	201, 545, 620, 1091, 1148
MslI	CAYNNNNRTG	2 cut(s)	218, 369
MspCI	CTTAAG	1 cut(s)	1090
MspI	CCGG	2 cut(s)	342, 935
MspR9I	CCNGG	4 cut(s)	33, 343, 602, 1043
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	3 cut(s)	33, 602, 1043
NaeI	GCCGGC	1 cut(s)	936
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	102, 919
NgoMIV	GCCGGC	1 cut(s)	934
NlaIII	CATG	7 cut(s)	140, 163, 223, 431, 445, 559, 843
NlaIV	GGNNCC	4 cut(s)	187, 520, 599, 814
NmuCI	GTSAC	2 cut(s)	631, 1069
NsbI	TGCGCA	1 cut(s)	146
NspI	RCATGY	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	2 cut(s)	1053, 1163
PdiI	GCCGGC	1 cut(s)	936
PfeI	GAWTC	2 cut(s)	657, 992
PfoI	TCCNGGA	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	47, 127, 180, 404, 425, 562, 565
PleI	GAGTC	2 cut(s)	844, 1046
PpsI	GAGTC	2 cut(s)	844, 1046
Ppu21I	YACGTR	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	880
Psp5II	RGGWCCY	1 cut(s)	880
Psp6I	CCWGG	3 cut(s)	31, 600, 1041
PspGI	CCWGG	3 cut(s)	31, 600, 1041
PspN4I	GGNNCC	4 cut(s)	187, 520, 599, 814
PspPI	GGNCC	6 cut(s)	185, 508, 821, 836, 861, 880
PspPPI	RGGWCCY	1 cut(s)	880
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
RsaI	GTAC	6 cut(s)	9, 212, 218, 434, 542, 1030
RsaNI	GTAC	6 cut(s)	8, 211, 217, 433, 541, 1029
RseI	CAYNNNNRTG	2 cut(s)	218, 369
SaqAI	TTAA	5 cut(s)	201, 545, 620, 1091, 1148
SatI	GCNGC	7 cut(s)	46, 126, 179, 403, 424, 561, 564
Sau3AI	GATC	2 cut(s)	102, 919
Sau96I	GGNCC	6 cut(s)	185, 508, 821, 836, 861, 880
SchI	GAGTC	2 cut(s)	844, 1046
ScrFI	CCNGG	4 cut(s)	33, 343, 602, 1043
SduI	GDGCHC	2 cut(s)	521, 959
SfaNI	GCATC	1 cut(s)	990
SinI	GGWCC	4 cut(s)	508, 836, 861, 880
SmiMI	CAYNNNNRTG	2 cut(s)	218, 369
SmlI	CTYRAG	3 cut(s)	166, 852, 1090
SmoI	CTYRAG	3 cut(s)	166, 852, 1090
Sse9I	AATT	7 cut(s)	97, 528, 688, 902, 967, 1153, 1198
SseBI	AGGCCT	1 cut(s)	792
SsiI	CCGC	5 cut(s)	125, 402, 423, 1095, 1116
StuI	AGGCCT	1 cut(s)	792
StyD4I	CCNGG	4 cut(s)	31, 341, 600, 1041
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	352, 954, 1103
TaiI	ACGT	3 cut(s)	218, 761, 1050
TaqI	TCGA	4 cut(s)	118, 319, 1157, 1166
TasI	AATT	7 cut(s)	97, 528, 688, 902, 967, 1153, 1198
TatI	WGTACW	2 cut(s)	7, 432
TauI	GCSGC	3 cut(s)	128, 405, 426
TfiI	GAWTC	2 cut(s)	657, 992
Tru1I	TTAA	5 cut(s)	201, 545, 620, 1091, 1148
Tru9I	TTAA	5 cut(s)	201, 545, 620, 1091, 1148
TscAI	CASTG	5 cut(s)	58, 330, 371, 599, 1130
TseFI	GTSAC	2 cut(s)	631, 1069
TseI	GCWGC	4 cut(s)	45, 178, 560, 563
Tsp45I	GTSAC	2 cut(s)	631, 1069
TspDTI	ATGAA	4 cut(s)	458, 544, 858, 909
TspGWI	ACGGA	2 cut(s)	471, 1037
TspRI	CASTG	5 cut(s)	58, 330, 371, 599, 1130
Vha464I	CTTAAG	1 cut(s)	1090
VneI	GTGCAC	1 cut(s)	955
VpaK11BI	GGWCC	4 cut(s)	508, 836, 861, 880
XapI	RAATTY	4 cut(s)	688, 902, 967, 1153
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.