pycom13g12940

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015981
Physical Location & Seq
Reverse (-)
9130730 .. 9132133
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
ATGCCAAGAGACAAGAGAGTAGAGAATAGAACACGAGAGATGGCCATGAACTTGGCTTTGTTTTCACTATTTCTGGGCGTTGCGATTGTTTTTGCAATCGTGCCGACAATCATAGGAGGAGGATATGGTGATGAGGATTGTGGTGACCCCTTGGGAAACGATGTGTACAAAGATAGATGCCCGGAGGCGGAGGCCATAATATATGCCGGGGTCAGGCTGGCTGTGTTTGAAGACCCAAGAATGGCAGCCTCTCTCCTTCGTCTCCATTTCCACGACTGCTTTGTTAATGGCTGCGATGCTTCAGTGTTGCTAGATGACAATGACAACTTTGTTGGGGAAAAAACAGCAGCGCCTAACTTGAACTCTCTGAGAGGTTTTGAAGTGATTGATGCAATAAAACAAGATCTTGAAATTGTTTGCCCTCAAACAGTTTCCTGTGCTGACATTCTTGCAGTTGCTGCCCGAGACTCCGTTGTTGTGTCTGGTGGACCTAGCTGGGATGTTCAGATGGGAAGGAAGGACAGCTTCACTGCTAGCAAATCGTTAGCAAATAACAACATTCCAGGCCCAAATTCTACTGTTGCAACACTGGTTTCCAAGTTCCAAAATGTAAACCTTAGCTTGAAGGACATGGTTGCACTCTCTGGTGCACACACGATGGGAAAAGCACGCTGCACCACCTTCACCGCCCGCCTACAAGGCTCCACTAATCCAAATGGTCCGGATTCGTCTCTTGAATACGTTCAGTCGCTGCAGCGGCTGTGCTCAGAATCTGACGGCAACACGCTGGCAAACCTTGACCTAGCAACCCCAGCTACGTTTGATAACCAGTACTATCTTAACCTTCTCTCCGGAGAGGGTTTGCTTCTGTCCGACCAGAATCTCGCAACCAGGGATGATCAAACGCGTGAACTGGTAGAAACCTACGCACAAGACCCGTCCGCCTTCTTCGAAGACTTCAAAGATTCCATGGTAAAAATGGGAAGCTTGGGAGCAGTTACCACGATGAATGGAGAGATTCGCAGGGACTGTCGAAGTGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

349

Amino Acids

37.68

Weight (kDa)

4.61

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 71 - 312 3.2e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16270
fragaria_vesca FvH4_4g20220
malus_domestica MD13G1150600.v1.1 MD16G1150800.v1.1 MD16G1150900.v1.1
prunus_persica Prupe.1G114700_v2.0.a1
pyrus_communis pycom13g12940
rosa_chinensis RchiOBHm_Chr4g0425811
rosa_laevigata RLG00000007338
rosa_multiflora Rmu_sc0007063.1_g000002
rosa_roxburghii Rroxscaffold_5G00367800
rosa_rugosa Rorug04G0206400
rosa_samantha Rh4CG281900 Rh4DG265900
rosa_wichuraiana Rw4G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 907
AccIII TCCGGA 2 cut(s) 721, 851
AciI CCGC 5 cut(s) 188, 687, 691, 757, 942
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 167, 833
AfiI CCNNNNNNNGG 3 cut(s) 187, 213, 241
AflIII ACRYGT 1 cut(s) 905
AgsI TTSAA 7 cut(s) 230, 361, 380, 410, 625, 737, 961
AjnI CCWGG 2 cut(s) 562, 890
AluBI AGCT 5 cut(s) 495, 525, 621, 815, 987
AluI AGCT 5 cut(s) 495, 525, 621, 815, 987
Alw21I GWGCWC 2 cut(s) 652, 767
Alw26I GTCTC 4 cut(s) 3, 266, 459, 735
Alw44I GTGCAC 1 cut(s) 648
AlwNI CAGNNNCTG 5 cut(s) 458, 751, 760, 773, 1029
Ama87I CYCGRG 1 cut(s) 462
Aor13HI TCCGGA 2 cut(s) 721, 851
AoxI GGCC 3 cut(s) 42, 192, 565
ApaLI GTGCAC 1 cut(s) 648
ApeKI GCWGC 7 cut(s) 245, 291, 347, 458, 672, 751, 754
ApoI RAATTY 1 cut(s) 571
Asp700I GAANNNNTTC 1 cut(s) 741
AspLEI GCGC 1 cut(s) 352
AspS9I GGNCC 3 cut(s) 488, 566, 719
AsuC2I CCSGG 2 cut(s) 182, 208
AsuHPI GGTGA 3 cut(s) 140, 155, 676
AsuII TTCGAA 1 cut(s) 951
AsuNHI GCTAGC 1 cut(s) 533
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 2 cut(s) 488, 719
BaeGI GKGCMC 1 cut(s) 652
BalI TGGCCA 1 cut(s) 44
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 237, 960
Bbv12I GWGCWC 2 cut(s) 652, 767
BbvI GCAGC 7 cut(s) 257, 278, 359, 445, 659, 738, 766
BccI CCATC 3 cut(s) 34, 502, 652
BceAI ACGGC 1 cut(s) 793
BciT130I CCWGG 2 cut(s) 564, 892
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 2 cut(s) 182, 208
BcoDI GTCTC 4 cut(s) 3, 266, 459, 735
BfaI CTAG 4 cut(s) 311, 492, 534, 803
BfmI CTRYAG 1 cut(s) 752
BfoI RGCGCY 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 699
BglII AGATCT 1 cut(s) 403
BisI GCNGC 8 cut(s) 246, 292, 348, 459, 673, 752, 755, 758
BlsI GCNGC 8 cut(s) 247, 293, 349, 460, 674, 753, 756, 759
BmcAI AGTACT 1 cut(s) 833
Bme1390I CCNGG 4 cut(s) 182, 208, 564, 892
Bme18I GGWCC 2 cut(s) 488, 719
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 3 cut(s) 488, 566, 719
BmiI GGNNCC 1 cut(s) 703
BmrFI CCNGG 4 cut(s) 182, 208, 564, 892
BmsI GCATC 3 cut(s) 167, 286, 379
BmtI GCTAGC 1 cut(s) 537
BpiI GAAGAC 2 cut(s) 237, 960
Bpu10I CCTNAGC 1 cut(s) 617
Bpu14I TTCGAA 1 cut(s) 951
BpuMI CCSGG 2 cut(s) 182, 208
BsaJI CCNNGG 4 cut(s) 150, 207, 891, 969
BsaWI WCCGGW 2 cut(s) 721, 851
BsaXI ACNNNNNCTCC 2 cut(s) 833, 863
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 213, 241
Bse1I ACTGG 3 cut(s) 594, 829, 918
BseAI TCCGGA 2 cut(s) 721, 851
BseBI CCWGG 2 cut(s) 564, 892
BseDI CCNNGG 4 cut(s) 150, 207, 891, 969
BseGI GGATG 2 cut(s) 505, 901
BseLI CCNNNNNNNGG 3 cut(s) 187, 213, 241
BseMII CTCAG 2 cut(s) 359, 780
BseNI ACTGG 3 cut(s) 594, 829, 918
BseRI GAGGAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 652
BseXI GCAGC 7 cut(s) 257, 278, 359, 445, 659, 738, 766
BseYI CCCAGC 2 cut(s) 495, 811
BsgI GTGCAG 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 907
BshFI GGCC 3 cut(s) 44, 194, 567
BsiHKAI GWGCWC 2 cut(s) 652, 767
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 4 cut(s) 182, 207, 722, 852
BslFI GGGAC 1 cut(s) 1040
BslI CCNNNNNNNGG 3 cut(s) 187, 213, 241
BsmAI GTCTC 4 cut(s) 3, 266, 459, 735
BsmBI CGTCTC 2 cut(s) 266, 735
BsmFI GGGAC 1 cut(s) 1040
BsnI GGCC 3 cut(s) 44, 194, 567
BsoBI CYCGRG 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 2 cut(s) 652, 767
Bsp13I TCCGGA 2 cut(s) 721, 851
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 2 cut(s) 403, 898
Bsp19I CCATGG 1 cut(s) 969
BspACI CCGC 5 cut(s) 188, 687, 691, 757, 942
BspANI GGCC 3 cut(s) 44, 194, 567
BspCNI CTCAG 2 cut(s) 360, 779
BspEI TCCGGA 2 cut(s) 721, 851
BspFNI CGCG 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 703
BspMAI CTGCAG 1 cut(s) 756
BspOI GCTAGC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 951
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 3 cut(s) 594, 829, 918
BssECI CCNNGG 4 cut(s) 150, 207, 891, 969
BssMI GATC 2 cut(s) 403, 898
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 150, 969
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 564, 892
Bst4CI ACNGT 3 cut(s) 430, 580, 1031
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 5 cut(s) 219, 535, 670, 691, 789
BstDEI CTNAG 3 cut(s) 368, 617, 766
BstDSI CCRYGG 1 cut(s) 969
BstEII GGTNACC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 505, 901
BstFNI CGCG 1 cut(s) 907
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 2 cut(s) 406, 901
BstMAI GTCTC 4 cut(s) 3, 266, 459, 735
BstMBI GATC 2 cut(s) 403, 898
BstMWI GCNNNNNNNGC 4 cut(s) 458, 699, 757, 812
BstNI CCWGG 2 cut(s) 564, 892
BstPI GGTNACC 1 cut(s) 143
BstSCI CCNGG 4 cut(s) 180, 206, 562, 890
BstSFI CTRYAG 1 cut(s) 752
BstSLI GKGCMC 1 cut(s) 652
BstUI CGCG 1 cut(s) 907
BstV1I GCAGC 7 cut(s) 257, 278, 359, 445, 659, 738, 766
BstV2I GAAGAC 2 cut(s) 237, 960
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 3 cut(s) 44, 194, 567
BtgI CCRYGG 1 cut(s) 969
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 505, 901
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 309, 528, 587
Cac8I GCNNGC 5 cut(s) 219, 535, 670, 691, 789
CaiI CAGNNNCTG 5 cut(s) 458, 751, 760, 773, 1029
CfoI GCGC 1 cut(s) 352
Cfr13I GGNCC 3 cut(s) 488, 566, 719
Csp6I GTAC 2 cut(s) 166, 832
CviAII CATG 3 cut(s) 46, 631, 970
CviQI GTAC 2 cut(s) 166, 832
DdeI CTNAG 3 cut(s) 368, 617, 766
DpnI GATC 2 cut(s) 405, 900
DpnII GATC 2 cut(s) 403, 898
EaeI YGGCCR 1 cut(s) 42
EciI GGCGGA 2 cut(s) 203, 931
Eco130I CCWWGG 2 cut(s) 150, 969
Eco47I GGWCC 2 cut(s) 488, 719
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 143
EcoRII CCWGG 2 cut(s) 562, 890
EcoT14I CCWWGG 2 cut(s) 150, 969
ErhI CCWWGG 2 cut(s) 150, 969
Esp3I CGTCTC 2 cut(s) 266, 735
FaeI CATG 3 cut(s) 49, 634, 973
FaiI YATR 8 cut(s) 47, 113, 126, 197, 202, 204, 632, 971
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 1 cut(s) 1040
FatI CATG 3 cut(s) 45, 630, 969
FauI CCCGC 1 cut(s) 698
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 8 cut(s) 246, 292, 348, 459, 673, 752, 755, 758
FokI GGATG 2 cut(s) 512, 908
Fsp4HI GCNGC 8 cut(s) 246, 292, 348, 459, 673, 752, 755, 758
FspBI CTAG 4 cut(s) 311, 492, 534, 803
GlaI GCGC 1 cut(s) 351
GluI GCNGC 8 cut(s) 246, 292, 348, 459, 673, 752, 755, 758
GsaI CCCAGC 2 cut(s) 499, 815
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 3 cut(s) 44, 194, 567
HapII CCGG 4 cut(s) 182, 207, 722, 852
HhaI GCGC 1 cut(s) 352
Hin1II CATG 3 cut(s) 49, 634, 973
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 985
HinfI GANTC 6 cut(s) 467, 725, 770, 880, 965, 1018
HpaII CCGG 4 cut(s) 182, 207, 722, 852
HphI GGTGA 3 cut(s) 140, 155, 676
Hpy166II GTNNAC 5 cut(s) 166, 488, 613, 650, 911
Hpy188I TCNGA 5 cut(s) 369, 507, 769, 775, 874
Hpy188III TCNNGA 4 cut(s) 407, 722, 734, 852
Hpy8I GTNNAC 5 cut(s) 166, 488, 613, 650, 911
HpyAV CCTTC 7 cut(s) 266, 507, 511, 619, 691, 854, 955
HpyCH4III ACNGT 3 cut(s) 430, 580, 1031
HpyCH4IV ACGT 2 cut(s) 741, 818
HpyCH4V TGCA 8 cut(s) 95, 392, 452, 584, 638, 650, 675, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 699, 757, 812
HpyF3I CTNAG 3 cut(s) 368, 617, 766
HpySE526I ACGT 2 cut(s) 741, 818
Hsp92II CATG 3 cut(s) 49, 634, 973
HspAI GCGC 1 cut(s) 350
Kpn2I TCCGGA 2 cut(s) 721, 851
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 2 cut(s) 403, 898
LmnI GCTCC 2 cut(s) 707, 992
Lsp1109I GCAGC 7 cut(s) 257, 278, 359, 445, 659, 738, 766
LweI GCATC 3 cut(s) 167, 286, 379
MaeI CTAG 4 cut(s) 311, 492, 534, 803
MaeII ACGT 2 cut(s) 741, 818
MaeIII GTNAC 2 cut(s) 143, 997
MalI GATC 2 cut(s) 405, 900
MboI GATC 2 cut(s) 403, 898
MboII GAAGA 3 cut(s) 242, 940, 965
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 652, 767
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 3 cut(s) 411, 571, 1042
MluI ACGCGT 1 cut(s) 905
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 897
MnlI CCTC 9 cut(s) 110, 113, 127, 178, 184, 259, 365, 432, 850
Mox20I TGGCCA 1 cut(s) 44
MroI TCCGGA 2 cut(s) 721, 851
MroXI GAANNNNTTC 1 cut(s) 741
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 285, 840
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 757
MspI CCGG 4 cut(s) 182, 207, 722, 852
MspR9I CCNGG 4 cut(s) 182, 208, 564, 892
MunI CAATTG 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 564, 892
MvnI CGCG 1 cut(s) 907
MwoI GCNNNNNNNGC 4 cut(s) 458, 699, 757, 812
NciI CCSGG 2 cut(s) 182, 208
NcoI CCATGG 1 cut(s) 969
NdeII GATC 2 cut(s) 403, 898
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 3 cut(s) 49, 634, 973
NlaIV GGNNCC 1 cut(s) 703
NmuCI GTSAC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 5 cut(s) 725, 770, 880, 965, 1018
PkrI GCNGC 8 cut(s) 247, 293, 349, 460, 674, 753, 756, 759
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 562, 890
PspEI GGTNACC 1 cut(s) 143
PspFI CCCAGC 2 cut(s) 495, 811
PspGI CCWGG 2 cut(s) 562, 890
PspN4I GGNNCC 1 cut(s) 703
PspPI GGNCC 3 cut(s) 488, 566, 719
PstI CTGCAG 1 cut(s) 756
PstNI CAGNNNCTG 5 cut(s) 458, 751, 760, 773, 1029
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 167, 833
RsaNI GTAC 2 cut(s) 166, 832
SaqAI TTAA 2 cut(s) 285, 840
SatI GCNGC 8 cut(s) 246, 292, 348, 459, 673, 752, 755, 758
Sau3AI GATC 2 cut(s) 403, 898
Sau96I GGNCC 3 cut(s) 488, 566, 719
ScaI AGTACT 1 cut(s) 833
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 4 cut(s) 182, 208, 564, 892
SduI GDGCHC 2 cut(s) 652, 767
SfaNI GCATC 3 cut(s) 167, 286, 379
SfcI CTRYAG 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 951
SinI GGWCC 2 cut(s) 488, 719
Sse9I AATT 3 cut(s) 411, 571, 1042
SsiI CCGC 5 cut(s) 188, 687, 691, 757, 942
SspMI CTAG 4 cut(s) 311, 492, 534, 803
StyD4I CCNGG 4 cut(s) 180, 206, 562, 890
StyI CCWWGG 2 cut(s) 150, 969
TaaI ACNGT 3 cut(s) 430, 580, 1031
TaiI ACGT 2 cut(s) 744, 821
TaqI TCGA 2 cut(s) 951, 1033
TasI AATT 3 cut(s) 411, 571, 1042
TatI WGTACW 2 cut(s) 165, 831
TauI GCSGC 1 cut(s) 760
TfiI GAWTC 5 cut(s) 725, 770, 880, 965, 1018
Tru1I TTAA 2 cut(s) 285, 840
Tru9I TTAA 2 cut(s) 285, 840
TscAI CASTG 3 cut(s) 309, 535, 594
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 7 cut(s) 245, 291, 347, 458, 672, 751, 754
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 62, 1022
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 3 cut(s) 309, 535, 594
VneI GTGCAC 1 cut(s) 648
VpaK11BI GGWCC 2 cut(s) 488, 719
XapI RAATTY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 976
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 4 cut(s) 311, 492, 534, 803
ZrmI AGTACT 1 cut(s) 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.