pycom13g13380

Outer envelope pore protein 16-2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011960
Physical Location & Seq
Reverse (-)
9404824 .. 9406533
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGTTGAACACGACCAGCAGCACTAGTTTGGAAACAAAGCCGTCGTTGCTGCAGGAGCTGCGCAGCTTCGACAAGAGCGGCATCTTCGACCTCGGCCACCCTCTCCTCAACCGCATCGCCGAGAGCTTCGTCAAGGCTGCTGGGATCGGAGCTATTCAGGCTGTGTCGCGCGAGGCTTATTTCATAGCCACTGAAGGATTCGATTCAAGTACAAATGGTATTCCGCCCGAAATCTCAGTTCCAGGCAACAAAAGGCAACGCTTCCCTGACCTCAGAGGTGAAGAATACAGGAAAGGAATCATTACAATGGGCATTACTAAGAGCTTGCTACTTGTATGGTGCTTAAAGCCGTTATTGCTTGGTTCCTTGGTGCAGAAAAACAGTGCAGTTGCGGGAGCGATTACAGGCGTTGCCCTGGCACTCACATCGGAGGGTTCGTCCCATGAGCAGATAGTGCAAGGCGCCATCACCGGAGCTGCCATATCCACCGCTGCAAATCTTCTTTCTGGGATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

173

Amino Acids

18.12

Weight (kDa)

7.88

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16160 AT4G16160
fragaria_vesca FvH4_4g19460
malus_domestica MD13G1156400.v1.1 MD16G1157300.v1.1
prunus_persica Prupe.1G122200_v2.0.a1 Prupe.1G122200_v2.0.a1
pyrus_communis pycom13g13380
rosa_chinensis RchiOBHm_Chr4g0424511
rosa_laevigata RLG00000007467
rosa_multiflora Rmu_sc0002603.1_g000009 Rmu_sc0003942.1_g000024
rosa_roxburghii Rroxscaffold_5G00366440
rosa_rugosa Rorug04G0198000
rosa_samantha Rh4AG254500 Rh4BG259900 Rh4CG271000 Rh4DG254300
rosa_wichuraiana Rw4G021980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 461
AccBSI CCGCTC 1 cut(s) 78
AccII CGCG 2 cut(s) 169, 171
AciI CCGC 5 cut(s) 78, 112, 224, 392, 489
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 2 cut(s) 7, 207
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 2 cut(s) 241, 414
AluBI AGCT 6 cut(s) 58, 66, 126, 152, 324, 476
AluI AGCT 6 cut(s) 58, 66, 126, 152, 324, 476
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 7 cut(s) 18, 49, 58, 63, 137, 476, 491
AspLEI GCGC 3 cut(s) 63, 171, 464
AsuHPI GGTGA 2 cut(s) 290, 460
BanI GGYRCC 1 cut(s) 461
BbvI GCAGC 7 cut(s) 30, 36, 45, 75, 124, 463, 478
BccI CCATC 1 cut(s) 473
BceAI ACGGC 2 cut(s) 25, 334
BcgI CGANNNNNNTGC 2 cut(s) 408, 442
BciT130I CCWGG 2 cut(s) 243, 416
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 465
BisI GCNGC 8 cut(s) 19, 50, 59, 64, 79, 138, 477, 492
BlsI GCNGC 8 cut(s) 20, 51, 60, 65, 80, 139, 478, 493
Bme1390I CCNGG 2 cut(s) 243, 416
BmiI GGNNCC 2 cut(s) 364, 463
BmrFI CCNGG 2 cut(s) 243, 416
BmsI GCATC 2 cut(s) 90, 123
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 91, 366, 414
BsaWI WCCGGW 1 cut(s) 470
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
BseBI CCWGG 2 cut(s) 243, 416
BseDI CCNNGG 3 cut(s) 91, 366, 414
BseMII CTCAG 2 cut(s) 249, 286
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 7 cut(s) 30, 36, 45, 75, 124, 463, 478
BseYI CCCAGC 1 cut(s) 140
BsgI GTGCAG 2 cut(s) 392, 405
Bsh1236I CGCG 2 cut(s) 169, 171
BshFI GGCC 1 cut(s) 96
BshNI GGYRCC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 424
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 5 cut(s) 78, 112, 224, 392, 489
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 248, 285
BspFNI CGCG 2 cut(s) 169, 171
BspLI GGNNCC 2 cut(s) 364, 463
BspMAI CTGCAG 1 cut(s) 54
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 461
BsrBI CCGCTC 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 91, 366, 414
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 243, 416
Bst4CI ACNGT 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 2 cut(s) 58, 454
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 3 cut(s) 235, 272, 318
BstFNI CGCG 2 cut(s) 169, 171
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 3 cut(s) 63, 171, 464
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 6 cut(s) 46, 55, 58, 158, 355, 454
BstNI CCWGG 2 cut(s) 243, 416
BstSCI CCNGG 2 cut(s) 241, 414
BstSFI CTRYAG 1 cut(s) 50
BstUI CGCG 2 cut(s) 169, 171
BstV1I GCAGC 7 cut(s) 30, 36, 45, 75, 124, 463, 478
BsuRI GGCC 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 189, 388
Cac8I GCNNGC 1 cut(s) 326
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 3 cut(s) 63, 171, 464
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 443
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 235, 272, 318
DinI GGCGCC 1 cut(s) 463
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 241, 414
EcoT14I CCWWGG 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 446
FaiI YATR 4 cut(s) 185, 337, 444, 482
FaqI GGGAC 1 cut(s) 424
FatI CATG 1 cut(s) 442
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 8 cut(s) 19, 50, 59, 64, 79, 138, 477, 492
Fsp4HI GCNGC 8 cut(s) 19, 50, 59, 64, 79, 138, 477, 492
FspBI CTAG 1 cut(s) 24
FspI TGCGCA 1 cut(s) 62
GlaI GCGC 3 cut(s) 62, 170, 463
GluI GCNGC 8 cut(s) 19, 50, 59, 64, 79, 138, 477, 492
GsaI CCCAGC 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 471
HhaI GCGC 3 cut(s) 63, 171, 464
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 446
Hin6I GCGC 3 cut(s) 61, 169, 462
HinP1I GCGC 3 cut(s) 61, 169, 462
HinfI GANTC 3 cut(s) 198, 203, 297
HpaII CCGG 1 cut(s) 471
HphI GGTGA 2 cut(s) 290, 460
Hpy188I TCNGA 3 cut(s) 149, 275, 430
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 5 cut(s) 52, 373, 386, 457, 494
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 55, 58, 158, 355, 454
HpyF3I CTNAG 3 cut(s) 235, 272, 318
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 446
HspAI GCGC 3 cut(s) 61, 169, 462
KasI GGCGCC 1 cut(s) 461
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 4 cut(s) 55, 149, 395, 473
Lsp1109I GCAGC 7 cut(s) 30, 36, 45, 75, 124, 463, 478
LweI GCATC 2 cut(s) 90, 123
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 146
MbiI CCGCTC 1 cut(s) 78
MboI GATC 1 cut(s) 144
MboII GAAGA 3 cut(s) 76, 293, 491
Mly113I GGCGCC 1 cut(s) 462
MnlI CCTC 7 cut(s) 101, 111, 116, 166, 269, 281, 424
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 2 cut(s) 243, 416
MvaI CCWGG 2 cut(s) 243, 416
MvnI CGCG 2 cut(s) 169, 171
MwoI GCNNNNNNNGC 6 cut(s) 46, 55, 58, 158, 355, 454
NarI GGCGCC 1 cut(s) 462
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 446
NlaIV GGNNCC 2 cut(s) 364, 463
NmeAIII GCCGAG 2 cut(s) 72, 145
NsbI TGCGCA 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 434
PfeI GAWTC 3 cut(s) 198, 203, 297
PkrI GCNGC 8 cut(s) 20, 51, 60, 65, 80, 139, 478, 493
PluTI GGCGCC 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 241, 414
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 2 cut(s) 241, 414
PspN4I GGNNCC 2 cut(s) 364, 463
PstI CTGCAG 1 cut(s) 54
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 8 cut(s) 19, 50, 59, 64, 79, 138, 477, 492
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 243, 416
SetI ASST 9 cut(s) 60, 68, 93, 128, 154, 273, 280, 326, 478
SfaNI GCATC 2 cut(s) 90, 123
SfcI CTRYAG 1 cut(s) 50
SfoI GGCGCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 305
SpeI ACTAGT 1 cut(s) 23
SsiI CCGC 5 cut(s) 78, 112, 224, 392, 489
SspDI GGCGCC 1 cut(s) 461
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 241, 414
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 69, 87, 201
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 3 cut(s) 198, 203, 297
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 196, 388
TseI GCWGC 7 cut(s) 18, 49, 58, 63, 137, 476, 491
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 2 cut(s) 196, 388
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.