Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005610

Physical Location & Seq

Genomic Coordinates Reverse (-)

11091895 .. 11094123

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGCAGCAATGGTTCCCGCGAAACGGCCAAAGACAATCAAGAAGCGCAGGCTACAACACCTTCTGCTCACGGAGGATCAAGAAGAGCACGAGCTGGATTCTCCGACTCTTTTTCAAGTCAAGAGAATTTGATTGGAGAGGGAGGCTATGCTGAAGTTTACAAGGGAACATTGGAAGATGGGCAGATTGTCGCGATCAAACGCCTGACTCGGGGTTCTCAAGAAGAAATGACTGCAGACTTCTTATCTGAGCTTGGTGTCATAGTTCATGTTGACCATCCCAATATTGCAAAGTTGATTGGATATGGGGTTGAAGGAGGGATGCATCTTGTTCTTCATTTGTCTCCCCATGGGAGCCTATCGTCTATACTTTACGGTTTGTTTATCATTGCGAATCTTATAAACACGAGAATTTATTTCGAACTTACAAATTCATGGACTCACCATGTTGTATCAAAATTCGAAGGCACATTTGGGTTTGTTAATCCAAAATCTTTAGATTTTTGCTTTTGTACTAAAGTAATTTTGTTTTCTCTTGATCGATCATTTGACATCTTTTCAACCCCAAATCATGACAGATATCTTCCTCCCGAGTTTTTCATGCACGGCATAGTAGATGAAAAAACCGATGTCTATGCTTATGGGGTGCTACTATTAGAGCTCATCACCGGCAGGCAAGCGTTGGATAGCTCACATAAAAGCCTTGTCATGTGGGCCAAACCCTTGCTCTCTATGAATAACATCAAAGAGATAGTTGATCCATGCCTCGGCGATGCCTATGACTTGAAAGAAATGAAACGTCTTGCGCTAACTGCTTCATTCTGCGTACATCAGTCTTCAATGAATCGACCACAAATGAGCCAGGCACGTCTTTTATTTCTAACCATGACTGCTCACAAGTTTATCATTTTACAGTGCCTACAAATTGTCCAAATTTTAGAAGGCGATGAAACCAGTTTGGAGTACGCTACAAAATATCACAAGTCTAAACTTCAGAGGACTTATTCGGAGGAGCTCTTGGATGCAGATGAGTACAACTCGACCAAGTATCTAAGTGACAGGGATAAACAACTGGAGTTTATCTTAGGCACTTCTAGTTCTAATGAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

41.43

Weight (kDa)

5.69

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	41 - 124	4.5e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 124	1.5e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18910
fragaria_vesca	FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761
malus_domestica	MD13G1176500.v1.1 MD16G1178300.v1.1
prunus_persica	Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1
pyrus_communis	pycom13g15230 pycom16g14980
rosa_chinensis	RchiOBHm_Chr4g0420341
rosa_laevigata	RLG00000007771
rosa_multiflora	Rmu_sc0002248.1_g000002 Rmu_sc0016213.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362990
rosa_rugosa	Rorug04G0163500
rosa_samantha	Rh4AG224600 Rh4BG227600 Rh4CG239100 Rh4DG223100
rosa_wichuraiana	Rw4G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccII	CGCG	2 cut(s)	21, 194
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	85, 752
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	5 cut(s)	127, 411, 430, 458, 933
AcuI	CTGAAG	2 cut(s)	174, 977
AfaI	GTAC	4 cut(s)	514, 828, 965, 1034
AfiI	CCNNNNNNNGG	3 cut(s)	25, 211, 767
AgsI	TTSAA	5 cut(s)	117, 314, 561, 787, 840
AjiI	CACGTC	1 cut(s)	869
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AluBI	AGCT	5 cut(s)	95, 253, 661, 690, 1015
AluI	AGCT	5 cut(s)	95, 253, 661, 690, 1015
Alw21I	GWGCWC	3 cut(s)	91, 663, 1017
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	85, 752
Ama87I	CYCGRG	2 cut(s)	210, 590
AoxI	GGCC	3 cut(s)	27, 714, 1107
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	5 cut(s)	127, 411, 430, 458, 933
AspLEI	GCGC	2 cut(s)	49, 808
AspS9I	GGNCC	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	434, 658
AsuII	TTCGAA	2 cut(s)	420, 462
AvaI	CYCGRG	2 cut(s)	210, 590
BanII	GRGCYC	2 cut(s)	663, 1017
BauI	CACGAG	2 cut(s)	90, 406
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	3 cut(s)	91, 663, 1017
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	173, 285
BceAI	ACGGC	2 cut(s)	42, 622
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	1095
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	863
BmeT110I	CYCGRG	2 cut(s)	210, 590
BmgBI	CACGTC	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	2 cut(s)	16, 356
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	4 cut(s)	312, 334, 763, 1012
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	1022, 1054
BpmI	CTGGAG	1 cut(s)	1094
Bpu14I	TTCGAA	2 cut(s)	420, 462
BpuEI	CTTGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	349, 766
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 211, 767
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	954, 1077
Bse3DI	GCAATG	2 cut(s)	16, 387
BseBI	CCWGG	1 cut(s)	863
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	349, 766
BseGI	GGATG	3 cut(s)	277, 327, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	25, 211, 767
BseMI	GCAATG	2 cut(s)	16, 387
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	954, 1077
BseRI	GAGGAG	1 cut(s)	1025
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	21, 194
BshFI	GGCC	3 cut(s)	29, 716, 1109
BshVI	ATCGAT	1 cut(s)	541
BsiHKAI	GWGCWC	3 cut(s)	91, 663, 1017
BsiHKCI	CYCGRG	2 cut(s)	210, 590
BsiSI	CCGG	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	25, 211, 767
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	29, 716, 1109
BsoBI	CYCGRG	2 cut(s)	210, 590
Bsp119I	TTCGAA	2 cut(s)	420, 462
Bsp1286I	GDGCHC	3 cut(s)	91, 663, 1017
Bsp143I	GATC	5 cut(s)	77, 195, 538, 542, 757
Bsp19I	CCATGG	1 cut(s)	349
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	3 cut(s)	29, 716, 1109
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	2 cut(s)	21, 194
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	2 cut(s)	16, 356
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	85, 752
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	2 cut(s)	420, 462
BsrDI	GCAATG	2 cut(s)	16, 387
BsrFI	RCCGGY	1 cut(s)	668
BsrI	ACTGG	2 cut(s)	954, 1077
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	349, 766
BssMI	GATC	5 cut(s)	77, 195, 538, 542, 757
BssSI	CACGAG	2 cut(s)	90, 406
BssT1I	CCWWGG	1 cut(s)	349
Bst2BI	CACGAG	2 cut(s)	90, 406
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	377, 915
Bst6I	CTCTTC	1 cut(s)	79
BstBI	TTCGAA	2 cut(s)	420, 462
BstC8I	GCNNGC	3 cut(s)	51, 674, 678
BstDEI	CTNAG	3 cut(s)	249, 1052, 1084
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	277, 327, 1027
BstFNI	CGCG	2 cut(s)	21, 194
BstHHI	GCGC	2 cut(s)	49, 808
BstKTI	GATC	5 cut(s)	80, 198, 541, 545, 760
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	5 cut(s)	77, 195, 538, 542, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	812
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	2 cut(s)	21, 194
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	828
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	29, 716, 1109
BsuTUI	ATCGAT	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	2 cut(s)	786, 960
BtrI	CACGTC	1 cut(s)	869
BtsCI	GGATG	3 cut(s)	277, 327, 1027
BtsIMutI	CAGTG	1 cut(s)	920
BtuMI	TCGCGA	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	51, 674, 678
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	2 cut(s)	49, 808
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	714
ClaI	ATCGAT	1 cut(s)	541
Csp6I	GTAC	4 cut(s)	513, 827, 964, 1033
CviAII	CATG	9 cut(s)	269, 350, 435, 446, 572, 601, 709, 762, 886
CviQI	GTAC	4 cut(s)	513, 827, 964, 1033
DdeI	CTNAG	3 cut(s)	249, 1052, 1084
DpnI	GATC	5 cut(s)	79, 197, 540, 544, 759
DpnII	GATC	5 cut(s)	77, 195, 538, 542, 757
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Ecl136II	GAGCTC	2 cut(s)	661, 1015
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	1109
Eco24I	GRGCYC	2 cut(s)	663, 1017
Eco32I	GATATC	1 cut(s)	581
Eco53kI	GAGCTC	2 cut(s)	661, 1015
Eco57I	CTGAAG	2 cut(s)	174, 977
Eco88I	CYCGRG	2 cut(s)	210, 590
EcoICRI	GAGCTC	2 cut(s)	661, 1015
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	663, 1017
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	9 cut(s)	272, 353, 438, 449, 575, 604, 712, 765, 889
FatI	CATG	9 cut(s)	268, 349, 434, 445, 571, 600, 708, 761, 885
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	3 cut(s)	264, 334, 1034
FriOI	GRGCYC	2 cut(s)	663, 1017
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	1095
GlaI	GCGC	2 cut(s)	48, 807
GluI	GCNGC	1 cut(s)	7
GsuI	CTGGAG	1 cut(s)	1094
HaeIII	GGCC	3 cut(s)	29, 716, 1109
HapII	CCGG	1 cut(s)	669
HhaI	GCGC	2 cut(s)	49, 808
Hin1II	CATG	9 cut(s)	272, 353, 438, 449, 575, 604, 712, 765, 889
Hin6I	GCGC	2 cut(s)	47, 806
HinP1I	GCGC	2 cut(s)	47, 806
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	6 cut(s)	99, 107, 208, 394, 439, 844
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	2 cut(s)	434, 658
Hpy166II	GTNNAC	2 cut(s)	160, 274
Hpy188I	TCNGA	4 cut(s)	106, 250, 996, 1009
Hpy188III	TCNNGA	8 cut(s)	41, 81, 122, 193, 221, 536, 572, 590
Hpy8I	GTNNAC	2 cut(s)	160, 274
HpyAV	CCTTC	4 cut(s)	72, 308, 458, 935
HpyCH4III	ACNGT	2 cut(s)	377, 915
HpyCH4IV	ACGT	2 cut(s)	799, 868
HpyCH4V	TGCA	5 cut(s)	236, 290, 325, 604, 1025
HpyF10VI	GCNNNNNNNGC	1 cut(s)	812
HpyF3I	CTNAG	3 cut(s)	249, 1052, 1084
HpySE526I	ACGT	2 cut(s)	799, 868
Hsp92II	CATG	9 cut(s)	272, 353, 438, 449, 575, 604, 712, 765, 889
HspAI	GCGC	2 cut(s)	47, 806
Kzo9I	GATC	5 cut(s)	77, 195, 538, 542, 757
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	354, 1012
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	4 cut(s)	312, 334, 763, 1012
MaeI	CTAG	1 cut(s)	1095
MaeII	ACGT	2 cut(s)	799, 868
MaeIII	GTNAC	1 cut(s)	1055
MalI	GATC	5 cut(s)	79, 197, 540, 544, 759
MboI	GATC	5 cut(s)	77, 195, 538, 542, 757
MboII	GAAGA	6 cut(s)	96, 188, 236, 326, 575, 828
MhlI	GDGCHC	3 cut(s)	91, 663, 1017
MluCI	AATT	7 cut(s)	127, 411, 430, 458, 522, 924, 933
MlyI	GAGTC	3 cut(s)	101, 202, 433
MmeI	TCCRAC	2 cut(s)	129, 663
MnlI	CCTC	9 cut(s)	68, 133, 137, 311, 597, 776, 990, 1003, 1099
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	1 cut(s)	483
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	2 cut(s)	21, 194
MwoI	GCNNNNNNNGC	1 cut(s)	812
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	5 cut(s)	77, 195, 538, 542, 757
NlaIII	CATG	9 cut(s)	272, 353, 438, 449, 575, 604, 712, 765, 889
NlaIV	GGNNCC	2 cut(s)	16, 356
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	1055
NruI	TCGCGA	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	327
NspV	TTCGAA	2 cut(s)	420, 462
PagI	TCATGA	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	1109
PciSI	GCTCTTC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	99, 394, 844
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	3 cut(s)	101, 202, 433
PpsI	GAGTC	3 cut(s)	101, 202, 433
PsiI	TTATAA	1 cut(s)	401
Psp124BI	GAGCTC	2 cut(s)	663, 1017
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	2 cut(s)	16, 356
PspPI	GGNCC	1 cut(s)	714
PstI	CTGCAG	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	194
RsaI	GTAC	4 cut(s)	514, 828, 965, 1034
RsaNI	GTAC	4 cut(s)	513, 827, 964, 1033
SacI	GAGCTC	2 cut(s)	663, 1017
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	5 cut(s)	77, 195, 538, 542, 757
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	3 cut(s)	101, 202, 433
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	3 cut(s)	91, 663, 1017
SetI	ASST	8 cut(s)	64, 97, 255, 663, 692, 802, 871, 1017
SfaNI	GCATC	4 cut(s)	312, 334, 763, 1012
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	2 cut(s)	420, 462
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	7 cut(s)	127, 411, 430, 458, 522, 924, 933
SseBI	AGGCCT	1 cut(s)	1109
SsiI	CCGC	1 cut(s)	19
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	1095
SstI	GAGCTC	2 cut(s)	663, 1017
StuI	AGGCCT	1 cut(s)	1109
StyD4I	CCNGG	1 cut(s)	861
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	377, 915
TaiI	ACGT	2 cut(s)	802, 871
TaqI	TCGA	5 cut(s)	420, 462, 541, 847, 1040
TasI	AATT	7 cut(s)	127, 411, 430, 458, 522, 924, 933
TatI	WGTACW	2 cut(s)	512, 1032
TfiI	GAWTC	3 cut(s)	99, 394, 844
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	920
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	1055
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	920
XapI	RAATTY	5 cut(s)	127, 411, 430, 458, 933
XspI	CTAG	1 cut(s)	1095
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.