Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005610

Physical Location & Seq

Genomic Coordinates Forward (+)

48367870 .. 48371383

Gene Structure 3514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG239100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTTGAGAAGAGGACAGCAACCCTTCCCGCCTGTGAAGATTCCAGCAAAACCAAAACTCACAAGACGGAAAAGTAAACGAATAAGAGAAGACCTCATTCCACCACTCAACAGTCCCGCTCTGAGGTCTCCTCTGGATCCTGAACTATACGGCTTCAAATCTTCCTGGAAGAATTACTCACTCTCAGAGCTCCAAGCTGCAACTAACAACTTTGGCAATGAGAACTTGATTGGGGAGGGGGGCTATGCTGAAGTTTACAAGGGGACATTGGAAGATGGGCAGATTGTCGCAATTAAACGTCTGACTAGAGGTAACCCAGAAGAAATGACAGCAGACTTCTTATCTGAGCTTGGTGTTATAGTTCATGTTGACCACCCCAACATAGCAAAACTGATTGGGTATGGGGTTGAAGGAGGGATGCACCTTGTTCTTCATTTGTCTCCCCACGGGAGCCTAGCATCTATACTATATGGCCCGAGAGAGATGTTAGATTGGGGCATCAGATATAAAGTAGCTTTAGGGACGGCTAAGGGCCTTGTGTATCTTCATGAGGGGTGCCAGAGAAGAATTATCCACAAAGATATTAAGGCTTCTAATATATTGCTCACAGAGGATTTTGAGCCTCAGATATCTGATTTCGGGCTAGCAAAGTGGCTACCAGATCAATGGACTCACCACATTGTATCAAAATTTGAAGGCACATTTGGCTACCTTCCCCCTGAGTTCTTCATGCATGGCATAGTAGATGAAAAAACTGATGTCTATGCATACGGGGTGCTATTATTAGAGCTCATCACTGGCCGGCAAGCTTTGGATAGCTCACATAAAAGCCTTGTCATGTGGGCCAAACCTTTACTCATGCAAAATAATATTAAAGAGCTAGCTGATCCAAGCCTTGTTGATGTCTATGATGTGGAACAAATGAAATGTCTTGCCTCGATAGCTTCGATGTGTGTACAGCAGTCTTCAGTGAATCGACCACAAATGAGACAGATTGTCCAGGTCTTAGAAGGTGATCAAGAGAGTTTGGATCTTGTAAAAAAACGGCAAAAGTCTAAAAAACTTGAGAGGACATATTCTGAGGAGCTCTTAGATGCAGACGAGTACAACTCCACCAAGTATTTAACTGATCTGGATAAGCGTCTGGAGTTTGTTTTAGGCCCCTCTAATGAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

44.3

Weight (kDa)

6.29

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 334	1.6e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 336	1.2e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005610)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18910
fragaria_vesca	FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761 FvH4_4g16761
malus_domestica	MD13G1176500.v1.1 MD16G1178300.v1.1
prunus_persica	Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1 Prupe.1G145600_v2.0.a1
pyrus_communis	pycom13g15230 pycom16g14980
rosa_chinensis	RchiOBHm_Chr4g0420341
rosa_laevigata	RLG00000007771
rosa_multiflora	Rmu_sc0002248.1_g000002 Rmu_sc0016213.1_g000003
rosa_roxburghii	Rroxscaffold_5G00362990
rosa_rugosa	Rorug04G0163500
rosa_samantha	Rh4AG224600 Rh4BG227600 Rh4CG239100 Rh4DG223100
rosa_wichuraiana	Rw4G019390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	2 cut(s)	29, 117
AclWI	GGATC	4 cut(s)	131, 144, 881, 1038
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	2 cut(s)	270, 951
AfaI	GTAC	2 cut(s)	957, 1106
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	157, 410, 695
AhdI	GACNNNNNGTC	1 cut(s)	995
AjnI	CCWGG	2 cut(s)	164, 999
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
Alw21I	GWGCWC	3 cut(s)	192, 792, 1089
Alw26I	GTCTC	3 cut(s)	132, 444, 982
AlwI	GGATC	4 cut(s)	131, 144, 881, 1038
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	5 cut(s)	472, 532, 799, 843, 1159
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AspS9I	GGNCC	4 cut(s)	473, 532, 843, 1160
AsuHPI	GGTGA	2 cut(s)	665, 1025
AsuNHI	GCTAGC	2 cut(s)	643, 880
AvaI	CYCGRG	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	3 cut(s)	192, 792, 1089
BbsI	GAAGAC	2 cut(s)	96, 957
Bbv12I	GWGCWC	3 cut(s)	192, 792, 1089
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	3 cut(s)	166, 540, 1061
BciT130I	CCWGG	2 cut(s)	166, 1001
BclI	TGATCA	1 cut(s)	1015
BcoDI	GTCTC	3 cut(s)	132, 444, 982
BfaI	CTAG	4 cut(s)	306, 455, 644, 881
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	166, 1001
BmeRI	GACNNNNNGTC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	4 cut(s)	473, 532, 843, 1160
BmiI	GGNNCC	4 cut(s)	138, 452, 557, 1162
BmrFI	CCNGG	2 cut(s)	166, 1001
BmsI	GCATC	4 cut(s)	408, 467, 507, 1084
BmtI	GCTAGC	2 cut(s)	647, 884
BpiI	GAAGAC	2 cut(s)	96, 957
BplI	GAGNNNNNCTC	6 cut(s)	78, 110, 115, 147, 1094, 1126
BpmI	CTGGAG	1 cut(s)	1166
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	1085
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	801
Bse1I	ACTGG	1 cut(s)	802
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	166, 1001
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	6 cut(s)	113, 198, 336, 638, 711, 1071
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	2 cut(s)	120, 1097
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	5 cut(s)	474, 534, 801, 845, 1161
BshNI	GGYRCC	1 cut(s)	555
BsiHKAI	GWGCWC	3 cut(s)	192, 792, 1089
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	802
BslFI	GGGAC	3 cut(s)	99, 277, 535
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	3 cut(s)	132, 444, 982
BsmFI	GGGAC	3 cut(s)	99, 277, 535
BsnI	GGCC	5 cut(s)	474, 534, 801, 845, 1161
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	3 cut(s)	192, 792, 1089
Bsp1407I	TGTACA	1 cut(s)	955
Bsp143I	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
BspACI	CCGC	2 cut(s)	29, 117
BspANI	GGCC	5 cut(s)	474, 534, 801, 845, 1161
BspCNI	CTCAG	6 cut(s)	114, 197, 337, 637, 712, 1072
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	138, 452, 557, 1162
BspOI	GCTAGC	2 cut(s)	647, 884
BspPI	GGATC	4 cut(s)	131, 144, 881, 1038
BspT107I	GGYRCC	1 cut(s)	555
BspTNI	GGTCTC	1 cut(s)	132
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	801
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	801
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
Bst2UI	CCWGG	2 cut(s)	166, 1001
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	4
BstAUI	TGTACA	1 cut(s)	955
BstC8I	GCNNGC	4 cut(s)	645, 803, 807, 882
BstDEI	CTNAG	9 cut(s)	122, 184, 345, 528, 624, 720, 1006, 1080, 1090
BstDSI	CCRYGG	1 cut(s)	445
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	6 cut(s)	139, 664, 889, 1018, 1033, 1132
BstMAI	GTCTC	3 cut(s)	132, 444, 982
BstMBI	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	705, 941
BstNI	CCWGG	2 cut(s)	166, 1001
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	164, 999
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	96, 957
BstX2I	RGATCY	2 cut(s)	136, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	2 cut(s)	136, 1030
BsuRI	GGCC	5 cut(s)	474, 534, 801, 845, 1161
BtgI	CCRYGG	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	423
BtsIMutI	CAGTG	2 cut(s)	795, 975
Cac8I	GCNNGC	4 cut(s)	645, 803, 807, 882
CciI	TCATGA	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	801
Cfr13I	GGNCC	4 cut(s)	473, 532, 843, 1160
CseI	GACGC	1 cut(s)	1130
Csp6I	GTAC	2 cut(s)	956, 1105
CviAII	CATG	6 cut(s)	365, 548, 730, 734, 838, 859
CviQI	GTAC	2 cut(s)	956, 1105
DdeI	CTNAG	9 cut(s)	122, 184, 345, 528, 624, 720, 1006, 1080, 1090
DpnI	GATC	6 cut(s)	138, 663, 888, 1017, 1032, 1131
DpnII	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
DriI	GACNNNNNGTC	1 cut(s)	995
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	1 cut(s)	4
Eam1105I	GACNNNNNGTC	1 cut(s)	995
EarI	CTCTTC	1 cut(s)	4
Ecl136II	GAGCTC	3 cut(s)	190, 790, 1087
Eco24I	GRGCYC	3 cut(s)	192, 792, 1089
Eco31I	GGTCTC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	630
Eco53kI	GAGCTC	3 cut(s)	190, 790, 1087
Eco57I	CTGAAG	2 cut(s)	270, 951
Eco88I	CYCGRG	1 cut(s)	475
Eco91I	GGTNACC	1 cut(s)	311
EcoICRI	GAGCTC	3 cut(s)	190, 790, 1087
EcoO109I	RGGNCCY	2 cut(s)	532, 1160
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	164, 999
EcoRV	GATATC	1 cut(s)	630
EcoT22I	ATGCAT	2 cut(s)	735, 769
EcoT38I	GRGCYC	3 cut(s)	192, 792, 1089
FaeI	CATG	6 cut(s)	368, 551, 733, 737, 841, 862
FaqI	GGGAC	3 cut(s)	99, 277, 535
FatI	CATG	6 cut(s)	364, 547, 729, 733, 837, 858
FauI	CCCGC	2 cut(s)	36, 124
FbaI	TGATCA	1 cut(s)	1015
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	3 cut(s)	192, 792, 1089
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	4 cut(s)	306, 455, 644, 881
GluI	GCNGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	1166
HaeIII	GGCC	5 cut(s)	474, 534, 801, 845, 1161
HapII	CCGG	1 cut(s)	802
HgaI	GACGC	1 cut(s)	1130
Hin1II	CATG	6 cut(s)	368, 551, 733, 737, 841, 862
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	807
HinfI	GANTC	3 cut(s)	40, 670, 973
HpaII	CCGG	1 cut(s)	802
HphI	GGTGA	2 cut(s)	665, 1025
Hpy166II	GTNNAC	4 cut(s)	77, 256, 370, 956
Hpy188I	TCNGA	8 cut(s)	123, 187, 303, 346, 503, 627, 634, 1081
Hpy188III	TCNNGA	6 cut(s)	134, 140, 548, 1019, 1133, 1145
Hpy8I	GTNNAC	4 cut(s)	77, 256, 370, 956
HpyAV	CCTTC	5 cut(s)	34, 404, 689, 722, 1004
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	6 cut(s)	200, 421, 733, 767, 862, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	705, 941
HpyF3I	CTNAG	9 cut(s)	122, 184, 345, 528, 624, 720, 1006, 1080, 1090
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	6 cut(s)	368, 551, 733, 737, 841, 862
KroI	GCCGGC	1 cut(s)	801
KroNI	GCCGGC	1 cut(s)	803
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
LmnI	GCTCC	3 cut(s)	195, 450, 1084
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	4 cut(s)	408, 467, 507, 1084
MaeI	CTAG	4 cut(s)	306, 455, 644, 881
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	6 cut(s)	138, 663, 888, 1017, 1032, 1131
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
MflI	RGATCY	2 cut(s)	136, 1030
MhlI	GDGCHC	3 cut(s)	192, 792, 1089
MluCI	AATT	4 cut(s)	172, 291, 567, 689
MlyI	GAGTC	1 cut(s)	664
Mph1103I	ATGCAT	2 cut(s)	735, 769
MroNI	GCCGGC	1 cut(s)	801
MseI	TTAA	4 cut(s)	294, 585, 873, 1124
MspI	CCGG	1 cut(s)	802
MspR9I	CCNGG	2 cut(s)	166, 1001
MvaI	CCWGG	2 cut(s)	166, 1001
MwoI	GCNNNNNNNGC	2 cut(s)	705, 941
NaeI	GCCGGC	1 cut(s)	803
NdeII	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
NgoMIV	GCCGGC	1 cut(s)	801
NheI	GCTAGC	2 cut(s)	643, 880
NlaIII	CATG	6 cut(s)	368, 551, 733, 737, 841, 862
NlaIV	GGNNCC	4 cut(s)	138, 452, 557, 1162
NsiI	ATGCAT	2 cut(s)	735, 769
PagI	TCATGA	1 cut(s)	547
PcsI	WCGNNNNNNNCGW	1 cut(s)	944
PdiI	GCCGGC	1 cut(s)	803
PfeI	GAWTC	2 cut(s)	40, 973
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp124BI	GAGCTC	3 cut(s)	192, 792, 1089
Psp6I	CCWGG	2 cut(s)	164, 999
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	164, 999
PspN4I	GGNNCC	4 cut(s)	138, 452, 557, 1162
PspPI	GGNCC	4 cut(s)	473, 532, 843, 1160
PsuI	RGATCY	2 cut(s)	136, 1030
RsaI	GTAC	2 cut(s)	957, 1106
RsaNI	GTAC	2 cut(s)	956, 1105
SacI	GAGCTC	3 cut(s)	192, 792, 1089
SaqAI	TTAA	4 cut(s)	294, 585, 873, 1124
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	6 cut(s)	136, 661, 886, 1015, 1030, 1129
Sau96I	GGNCC	4 cut(s)	473, 532, 843, 1160
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	166, 1001
SduI	GDGCHC	3 cut(s)	192, 792, 1089
SfaNI	GCATC	4 cut(s)	408, 467, 507, 1084
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
Sse9I	AATT	4 cut(s)	172, 291, 567, 689
SsiI	CCGC	2 cut(s)	29, 117
SspI	AATATT	1 cut(s)	871
SspMI	CTAG	4 cut(s)	306, 455, 644, 881
SstI	GAGCTC	3 cut(s)	192, 792, 1089
StyD4I	CCNGG	2 cut(s)	164, 999
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	3 cut(s)	938, 947, 976
TasI	AATT	4 cut(s)	172, 291, 567, 689
TatI	WGTACW	2 cut(s)	955, 1104
TfiI	GAWTC	2 cut(s)	40, 973
Tru1I	TTAA	4 cut(s)	294, 585, 873, 1124
Tru9I	TTAA	4 cut(s)	294, 585, 873, 1124
TscAI	CASTG	2 cut(s)	802, 975
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	6 cut(s)	353, 422, 536, 718, 762, 938
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	802, 975
XapI	RAATTY	1 cut(s)	689
XspI	CTAG	4 cut(s)	306, 455, 644, 881
Zsp2I	ATGCAT	2 cut(s)	735, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.